XLOC_005055 (mettl9)


Basic Information

Item Value
gene id XLOC_005055
gene name mettl9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 992442 ~ 999800 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009846
CTTTTCAGTGTAACACCATGAGGAAGTGAATTGTCTTTTTTTCCAGCTGATCTGTGTGTCAGATGTGTTTGTTGTCTACTCTATCCtccagacagacagatgatgagTGTGTGAACAGCCCCCCGCCTGCAGATGAGGAGGCTGGTCTTCGTCTTCTGGCTGCTGTTTTATGTGTGGTTCCTGCTGTCCATCAGGAAGATGTGGACAGGTCGGTATGTTCGCAGTCCTCTGGCCAGATCTCTCTTCATGAACATGCTGTCAGACACCGAAACGGCGGACTATGGGGACCAAAAGtGGTACCGCTGCTGTCCGGATCTGCTTGGAGAAAGCGTGAGCTCTGTGTTCGTTCAGAGTCATCTGGATGAGGAAACGCAGGCGTTTCTACAAAGGAGCGTCGAGAAGTCCAGCTGGATCTTCACTCAGCTTTACCACTCACTGTTCTCCAGCATCTTCAGCCCCATCATCTCCCGCACATCCATCAacggGTTTCTGGGCCGCGGCTCCATGTTCGTGTTCTCCAGGGATCAGTTTCGGCGTCTCCTCAGGATCGGGCCGGACTGGAGAGCGCAGCGGATGCTGGATCTGGGAGCCGGAGACGGAGGCGTCACTGAAGTCATGGGTTCACACTTTCATGAGGTCTACGCTACTGAGGTCTCCACACCCATGAAGTGGCATCTACAGCGCAAAAACTACAGGCGGGTCGTGGGTTCGGCCGAAGCAGCACATCCAGGTTCAGGGGAAGAGCTGGGAGGAGCAGGTGACGCACCTGAGCACGCAGGTGTTCCCGCAGGTGGGTTTGGAGCTGCAGGCCGTCACGCGTCTGCCGTATCTGTGTGAAGGAGACATGTACAGAGATTATTACGTGCTGGACGACGCCGTCTTCATCCTCAAACCACTCaaacactgacacaaacactgaCTGACAACTCCAACCAAAGGGCTGACGCAACTCAGGAAAACATCAACATTATTCAATCAGAGTCAGGCAGATGACGGACTGCAGAGTTTCCTTTGGGAACGGAATAAAGATTCAGTGGAAACGTTTAGAGAAATCTACTTATTATTTGGTCTAATTACAGgtaaatgattagccctcctgtgaaatttaatatgaatatttcCTGATAATGTTATCAAATATTTAGGTGCTGTTTAATAAATAcggtttaaagaaattaaaacgcAGAAGTATGGAAAAACATATAcctgtagtcaacatttgaagttgaTTTAAGATATTATTATAGTATAATTAACAAAGTACAAATGTTTATACATTGATCCTGTATGTTACTGATTAAATATCGGTATTGTTCAAtacacacttttattttaaaggttttaattCTTGTTAAATGTTGATTGCTGAAGTTATTCTGAAGTAATAACTGCAGATCCTCATGGTGTGTGTCtctaatatgttattattattgttacatgttttctgtcaGTCTGAACAGAACTTTTGATGAGTCTGAAACATCGTAGGACCAAGTTAAGACATTATTAAATGATGTCTGCTGTTCATTGCACAACACAGCGAGAGTCTAAACATGCATTTGCAGTATGTAGGTTCTGGTTAAGTTCATGTTTTCCTTGTGTATTAGGTATGTGCTGATTTTATCGATCGTGTGTTCACTGTGCAATAAATCTCCTTGAACTTGATGATGAGGTGAGAGGAACTCGTTTGTTATATAATAAAATCTAGTTTATTAgttaaatgcttgttttgttagacaattaaatgcattaaattgaaaGCCAAAGCTAGCAAATTAAA
>TCONS_00009847
GTCTTTTTTTCCAGCTGATCTGTGTGTCAGATGTGTTTGTTGTCTACTCTATCCtccagacagacagatgatgagTGTGTGAACAGCCCCCCGCCTGCAGATGAGGAGGCTGGTCTTCGTCTTCTGGCTGCTGTTTTATGTGTGGTTCCTGCTGTCCATCAGGAAGATGTGGACAGGTCGGTATGTTCGCAGTCCTCTGGCCAGATCTCTCTTCATGAACATGCTGTCAGACACCGAAACGGCGGACTATGGGGACCAAAAGtGGTACCGCTGCTGTCCGGATCTGCTTGGAGAAAGCGTGAGCTCTGTGTTCGTTCAGAGTCATCTGGATGAGGAAACGCAGGCGTTTCTACAAAGGAGCGTCGAGAAGTCCAGCTGGATCTTCACTCAGCTTTACCACTCACTGTTCTCCAGCATCTTCAGCCCCATCATCTCCCGCACATCCATCAacggGTTTCTGGGCCGCGGCTCCATGTTCGTGTTCTCCAGGGATCAGTTTCGGCGTCTCCTCAGGATCGGGCCGGACTGGAGAGCGCAGCGGATGCTGGATCTGGGAGCCGGAGACGGAGGCGTCACTGAAGTCATGGGTTCACACTTTCATGAGGTCTACGCTACTGAGGTCTCCACACCCATGAAGTGGCATCTACAGCGCAAAAACTACAGtctgcTGGGTATCGATGAGTGGCAGTGCACCGGTCTCCAGTATGATCTGATCAGCTGTCTGAATCTGCTGGATCGCTGTGACGAGCCGCTGAAGCTCCTGCAGGACATCAGGAGTGCGCTGGTGCCCGAAACGGGACGCCTCATCCTGGCCGCGGTGCTGCCCTTTCAGCCTTATGTGGAGACGGGCGGGTCGTGGGTTCGGCCGAAGCAGCACATCCAGGTTCAGGGGAAGAGCTGGGAGGAGCAGGTGACGCACCTGAGCACGCAGGTGTTCCCGCAGGTGGGTTTGGAGCTGCAGGCCGTCACGCGTCTGCCGTATCTGTGTGAAGGAGACATGTACAGAGATTATTACGTGCTGGACGACGCCGTCTTCATCCTCAAACCACTCaaacactgacacaaacactgaCTGACAACTCCAACCAAAGGGCTGACGCAACTCAGGAAAACATCAACATTATTCAATCAGAGTCAGGCAGATGACGGACTGCAGAGTTTCCTTTGGGAACGGAATAAAGATTCAGTGGAAACGTTTAGAGAAATCTACTTATTATTTGGTCTAATTACAGgtaaatgattagccctcctgtgaaatttaatatgaatatt
>TCONS_00009848
CGGTCTCTTTTCAGTGTAACACCATGAGGAAGTGAATTGTCTTTTTTTCCAGCTGATCTGTGTGTCAGATGTGTTTGTTGTCTACTCTATCCtccagacagacagatgatgagTGTGTGAACAGCCCCCCGCCTGCAGGAAGATGTGGACAGGTCGGTATGTTCGCAGTCCTCTGGCCAGATCTCTCTTCATGAACATGCTGTCAGACACCGAAACGGCGGACTATGGGGACCAAAAGtGGTACCGCTGCTGTCCGGATCTGCTTGGAGAAAGCGTGAGCTCTGTGTTCGTTCAGAGTCATCTGGATGAGGAAACGCAGGCGTTTCTACAAAGGAGCGTCGAGAAGTCCAGCTGGATCTTCACTCAGCTTTACCACTCACTGTTCTCCAGCATCTTCAGCCCCATCATCTCCCGCACATCCATCAacggGTTTCTGGGCCGCGGCTCCATGTTCGTGTTCTCCAGGGATCAGTTTCGGCGTCTCCTCAGGATCGGGCCGGACTGGAGAGCGCAGCGGATGCTGGATCTGGGAGCCGGAGACGGAGGCGTCACTGAAGTCATGGGTTCACACTTTCATGAGGTCTACGCTACTGAGGTCTCCACACCCATGAAGTGGCATCTACAGCGCAAAAACTACAGtctgcTGGGTATCGATGAGTGGCAGTGCACCGGTCTCCAGTATGATCTGATCAGCTGTCTGAATCTGCTGGATCGCTGTGACGAGCCGCTGAAGCTCCTGCAGGACATCAGGAGTGCGCTGGTGCCCGAAACGGGACGCCTCATCCTGGCCGCGGTGCTGCCCTTTCAGCCTTATGTGGAGACGGGCGGGTCGTGGGTTCGGCCGAAGCAGCACATCCAGGTTCAGGGGAAGAGCTGGGAGGAGCAGGTGACGCACCTGAGCACGCAGGTGTTCCCGCAG
>TCONS_00009849
TCAGATGTGTTTGTTGTCTACTCTATCCtccagacagacagatgatgagTGTGTGAACAGCCCCCCGCCTGCAGATGAGGAGGCTGGTCTTCGTCTTCTGGCTGCTGTTTTATGTGTGGTTCCTGCTGTCCATCAGGAAGATGTGGACAGGTCGGTATGTTCGCAGTCCTCTGGCCAGATCTCTCTTCATGAACATGCTGTCAGACACCGAAACGGCGGACTATGGGGACCAAAAGtGGTACCGCTGCTGTCCGGATCTGCTTGGAGAAAGCGTGAGCTCTGTGTTCGTTCAGAGTCATCTGGATGAGGAAACGCAGGCGTTTCTACAAAGGAGCGTCGAGAAGTCCAGCTGGATCTTCACTCAGCTTTACCACTCACTGTTCTCCAGCATCTTCAGCCCCATCATCTCCCGCACATCCATCAacgggtaacacacacacacagtcagcttCACGACTCGCTGTTGTCCAGCATCTTCAGCCCTCATCTCctgtatatacacatgtatatgcACAGTGTTATTATTCAAAACTCTTTacttaaagtgtttgttttttttaaatataattagacAACAATAATTATCTAGAAGATTCTGTGTATATTCTGTGATGGCACtcggctggatgtacattatcccttGTTTTGGTGTGTGTCTGCAGGTTTCTGGGCCGCGGCTCCATGTTCGTGTTCTCCAGGGATCAGTTTCGGCGTCTCCTCAGGATCGGGCCGGACTGGAGAGCGCAGCGGATGCTGGATCTGGGAGCCGGAGACGGAGGCGTCACTGAAGTCATGGGTTCACACTTTCATGAGGTCTACGCTACTGAGGTCTCCACACCCATGAAGTGGCATCTACAGCGCAAAAACTACAGtctgcTGGGTATCGATGAGTGGCAGTGCACCGGTCTCCAGTATGATCTGATCAGCTGTCTGAATCTGCTGGATCGCTGTGACGAGCCGCTGAAGCTCCTGCAGGACATCAGGAGTGCGCTGGTGCCCGAAACGGGACGCCTCATCCTGGCCGCGGTGCTGCCCTTTCAGCCTTATGTGGAGACGGG

Function

symbol description
mettl9 Is expressed in solid lens vesicle. Orthologous to human METTL9 (methyltransferase like 9).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-752 Is expressed in solid lens vesicle. Orthologous to human METTL9 (methyltransferase like 9).

Ensembl:

ensembl_id ENSDARG00000060001

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009846 False 1780 mRNA 0.44 5 992442 999794
TCONS_00009847 False 1272 mRNA 0.53 6 993103 999762
TCONS_00009848 False 919 mRNA 0.56 6 993432 999800
TCONS_00009849 True 1058 lncRNA 0.52 4 995830 999736

Neighbor

gene id symbol gene type direction distance location
XLOC_005054 kdelr2b coding downstream 2293 982796 ~ 990149 (-)
XLOC_005053 daglb coding downstream 12653 964760 ~ 979789 (-)
XLOC_005052 SPAG9 coding downstream 31428 899223 ~ 961014 (-)
XLOC_005051 tob1b coding downstream 141985 847187 ~ 850457 (-)
XLOC_005050 si:ch211-176g6.2 coding downstream 308242 657704 ~ 684200 (-)
XLOC_005056 polr3e coding upstream 14618 1014418 ~ 1034460 (-)
XLOC_005057 NA coding upstream 72685 1072485 ~ 1085227 (-)
XLOC_005058 si:dkey-275b16.2 coding upstream 338541 1338341 ~ 1345562 (-)
XLOC_005059 RASSF4 coding upstream 349618 1349418 ~ 1361517 (-)
XLOC_005060 LO018020.2 coding upstream 368845 1368645 ~ 1370372 (-)
XLOC_005043 NA non-coding downstream 583811 406187 ~ 408631 (-)
XLOC_005042 NA non-coding downstream 636887 337808 ~ 355555 (-)
XLOC_005037 NA non-coding downstream 713107 250081 ~ 279335 (-)
XLOC_005038 NA non-coding downstream 727241 262396 ~ 265201 (-)
XLOC_005035 NA non-coding downstream 811633 180200 ~ 180809 (-)
XLOC_005062 NA non-coding upstream 453100 1452900 ~ 1453339 (-)
XLOC_005063 CU694266.1 non-coding upstream 490672 1490472 ~ 1490588 (-)
XLOC_005067 NA non-coding upstream 1000219 2000019 ~ 2001490 (-)
XLOC_005068 NA non-coding upstream 1000836 2000636 ~ 2001824 (-)

Expression


Co-expression Network