XLOC_005056 (polr3e)


Basic Information

Item Value
gene id XLOC_005056
gene name polr3e
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1014418 ~ 1034460 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009850
GTTTGTGACGCGTTCTGTATCGCGCGGTGAATGCTGGgatatgagcacacacacacacacactgacacagcTCCTCCCCACGTGTTTGAGTGACTGCAGCTCTACGATCGGCAACATGGCAGAAGAGACAGCAGATAAGCACACAAATAAGGCTTCAGTCTGACCTGCTGGAGGACTTCATCTCCAAGACACTGCTGTACATTGAGACGGGCTTCTTCTTCTGGGTTCAGCCGCGTAGTGTTGATGATTTAGCGGATCCGCCGAGGCCTCGGTTTGAATCCTCCATCAGCATCTTCTCCTCTTTCTCAAGTCTTCATTATGGCCAGTGGAGACGATGATGATCCCATCATACAGGAGATCGATGTTTACCTGGCCAGAAGTCTGGTGGAGAAGCTCTATTTATTCCAGTATCCCGTGCGTCCCGGATCTATGAGCTACAATAATGTGACTCATTTGGGGGCCAAAATCAAACCCAAGCAGCAGAAAGTTGAGCTGGAGGTTGCGATGGACACCATGAGTCCAAACTACAGCCGCAGTAAAGGAGAGCAGATTGCGCTGAACGTGGACGGCATGTCTTCCGAGGACTCCAACGTCTACACAACGAAAATGATGGACAAGCAAACGTTCTCATCGATCCAGGCGACCACGAACACGTCTCGCTACGCCGCGGCTGTGTTTCACAAAGGAGAGCTCCATCTGACTCCACTGCAGGGAATCCTCCAGATGAGACCCAGCTTCACCTATCTGGATAAAGCAGATACGAAACATCGAGAACGAGAAGCTGCCAATGAAGCTGGAGACTCTTCACAGGATGAAGCAGAAGATGATGTTAAACAAATCACTGTGAGGTTTTCCAGACCCGAGTCTGAGCAGGCCCGTCAGCGGCGCATCCAGTCCTACGAGTTCCTGCAGAAGAAACAGGCCGAGGAGCCCTGGGTTCATCTCCATTACCATGCCATAAAGGACAGCCGGTCTGAACACGAGCGCCAGTATCTGTACTGTCAGGCCATGGACACCACCGAAAACACAGAGCTGGTCAAAACACCACGTGAATATCTGTCCATGCTCATGCCTCCGCTGGCTGAAGAAAAAGTTGTTAAACCTGTGGGTCCCAGTAATGTGCTGTCCATGGCTCAGCTGCGCACTCTTCCTCTGGGAGATCAGGTCAAGACGCTGATGAAGAACGTGAAGGTAATGCCGTTTGCCAATCTGATGGGTCTGCTGGCGTCAGGAACAGACTCCACTGCAGTACTGAGGTGCATTCAGCAGGTGGCGCTGCTGGTGCAGGGAAACTGGGTCGTCAAGAGTGATGTTCTGTATCCCAAGAACACGTGTAGTTCACACAGTGGTGTTCCTGCTGAAGTGCTCTGCCGCGGTCGAGACTTTGTGATGTGGAGATTCACTATAGAGCGAACCCTGATGAGAAAAGAGGTTGCCGCCATCATAAAGCTTCCTCCGGAAGACGTGAAGGACTTCCTGGAGCAGATGTCTGTTCCTCGGTTGAACCGAGGCTGGGAGTTTCTGCTGCCCACAGATCAGGATTTTGTCAAGAAGCATCCAGACGTGGCTCAGAGACAACACATGCTCTGGACGGGCATTCAGTCCAAGTTGGAAAAAGTGTTCAACTTCTCCAAAGACGACTTTGTGCATAAAAAGGATGTGCAGATGGAGCCGGTTCACCTCAGTGGAGACCAGCGTCTGAAAGCGGCTCAAGAAAACGCTCAGGAGAAGCACTCCATCCTGCAGCGAGAGCTCGACGCTCACCGGTTGAAGGCTTCAAGACTTTCAGGCTCCCAAGGACCTTCCGGTGCTTCGGTCACAGTGAAGCAGGAGCCGGTGAGCGACTCTGAGGAGCCGATGGACACGGGTGCAGCGCTCACCAACGGCTCTGTCAACGGTTACCCTGCGGCCAGCTCTCCAACGTCCGATCCGCACAACGGCCATGGACAGGCCTTCACGCCGGAGCTGCAGGACTTTGTGAAAAACACCTTCAGAAAGCATTACGTTCTGTGCCTGAGCGAAGTCAAGCGGCTGTTTAACCTGCATCTGGCTAGTTTACCGAGTGGCCACGCGGCGTACGGACACGTGACGGACCGCATGCTGCAGGACACCATCCTGCACAGCCACTGCAAGCAGATCCTCGTGCCTtttcctCCTCAGAGCAGCGCTGCCGCAGACGAGCAGAAGGTGTTTGGCTTGTGGGAAAGCGGAGAAACCTTTGACAAGctCCGGCAGATTCTGTTCGAGATCTTCATGAAGAATTATCGCGTCAGGAGAAACGTGATCCAGACGCGTCTCACACAGGAGCTCGGAGACGCCGTCAACAAGACTGATGTGGACCGACTGCTCAAGgaGTGCTGCATTAGTCTGGGAGGGATGTGGTATCTGAAAGGCACCGTTCACTCCTGACACCCACCACTACTGACGGAcacctgtcaatcaccatcaTCTCCCTCACAGGGAGGAGGAGCCAACTCACCAACCAATCAGAGGCGTGTGCCAAGCGACTGGGCGGAGCTTcagcatttaaaaacacacaacagAAGAGCTGATGGTCACGAGAGGACAGCGCCGCTCTTTACTTTAATGCCAGAGTACTTAAATAAGAGGATGATCGCGCGTCGGCTCGTTTTATGAGGCCTTCCAGAGCTCAGCAGCAGATTTATGACCTTGTTTGTTATTAGTTTATTCTGGAAAAAGCTCAAATACGAGGAgattattggtttattatatacttttgattttattgcttctatattttcttttgttttgagcTGAAGGACAGCAGATGATCAAATAACCGTCTGAGATATTCGTTTGTGCTTCATATTCACTGTTTACAGCTTTGATCACccaaaaatggatttaaaaactAAACGAAACGTGGACGCTTGGATATCTGGAACGGTTTTGAGTTAATCAGATCCTCATTTAAATCAAGCTCATGAATATTTATTAGCTCTGTTTCTTTTGGACCTATAAGGGCTCAGAATGAAGAGTTCTGATCTAAATATGTGAATAAATGCAGCAACGGTCATGTGTGGAGGATTCAGGTTATGCTGGAGTGTTTCTGAAAGTGCCTCTTTACCTTTATCAGGGGAAATATGCAGCGGTGTGATTCTGCTTCTGACTGAACTcgtgagtgtgtctgtgttgtgGATCTCCGTCTGTGTGTTTTAATCATTCCACATACTCGGAAAATCATCGCTCCACGTCTAACAgtcaccatttttttttatttgtacatcATTATGAATAAATGTTGCAACCATAA
>TCONS_00009851
ATGGCCAGTGGAGACGATGATGATCCCATCATACAGGAGATCGATGTTTACCTGGCCAGAAGTCTGGTGGAGAAGCTCTATTTATTCCAGTATCCCGTGCGTCCCGGATCTATGAGCTACAATAATGTGACTCATTTGGGGGCCAAAATCAAACCCAAGCAGCAGAAAGTTGAGCTGGAGGTTGCGATGGACACCATGAGTCCAAACTACAGCCGCAGTAAAGGAGAGCAGATTGCGCTGAACGTGGACGGCATGTCTTCCGAGGACTCCAACGTCTACACAACGAAAATGATGGACAAGCAAACGTTCTCATCGATCCAGGCGACCACGAACACGTCTCGCTACGCCGCGGCTGTGTTTCACAAAGGAGAGCTCCATCTGACTCCACTGCAGGGAATCCTCCAGATGAGACCCAGCTTCACCTATCTGGATAAAGCAGATACGAAACATCGAGAACGAGAAGCTGCCAATGAAGCTGGAGACTCTTCACAGGATGAAGCAGAAGATGATGTTAAACAAATCACTGTGAGGTTTTCCAGACCCGAGTCTGAGCAGGCCCGTCAGCGGCGCATCCAGTCCTACGAGTTCCTGCAGAAGAAACAGGCCGAGGAGCCCTGGGTTCATCTCCATTACCATGCCATAAAGGACAGCCGGTCTGAACACGAGCGCCAGTATCTGTACTGTCAGGCCATGGACACCACCGAAAACACAGAGCTGGTCAAAACACCACGTGAATATCTGTCCATGCTCATGCCTCCGCTGGCTGAAGAAAAAGTTGTTAAACCTGTGGGTCCCAGTAATGTGCTGTCCATGGCTCAGCTGCGCACTCTTCCTCTGGGAGATCAGGTCAAGACGCTGATGAAGAACGTGAAGGTAATGCCGTTTGCCAATCTGATGGGTCTGCTGGCGTCAGGAACAGACTCCACTGCAGTACTGAGGTGCATTCAGCAGGTGGCGCTGCTGGTGCAGGGAAACTGGGTCGTCAAGAGTGATGTTCTGTATCCCAAGAACACGTGTAGTTCACACAGTGGTGTTCCTGCTGAAGTGCTCTGCCGCGGTCGAGACTTTGTGATGTGGAGATTCACTATAGAGCGAACCCTGATGAGAAAAGAGGTTGCCGCCATCATAAAGCTTCCTCCGGAAGACGTGAAGGACTTCCTGGAGCAGATGTCTGTTCCTCGGTTGAACCGAGGCTGGGAGTTTCTGCTGCCCACAGATCAGGATTTTGTCAAGAAGCATCCAGACGTGGCTCAGAGACAACACATGCTCTGGACGGGCATTCAGTCCAAGTTGGAAAAAGTGTTCAACTTCTCCAAAGACGACTTTGTGCATAAAAAGGATGTGCAGATGGAGCCGGTTCACCTCAGTGGAGACCAGCGTCTGAAAGCGGCTCAAGAAAACGCTCAGGAGAAGCACTCCATCCTGCAGCGAGAGCTCGACGCTCACCGGTTGAAGGCTTCAAGACTTTCAGGCTCCCAAGGACCTTCCGGTGCTTCGGTCACAGTGAAGCAGGAGCCGGTGAGCGACTCTGAGGAGCCGATGGACACGGGTGCAGCGCTCACCAACGGCTCTGTCAACGGTTACCCTGCGGCCAGCTCTCCAACGTCCGATCCGCACAACGGCCATGGACAGGCCTTCACGCCGGAGCTGCAGGACTTTGTGAAAAACACCTTCAGAAAGCATTACGTTCTGTGCCTGAGCGAAGTCAAGCGGCTGTTTAACCTGCATCTGGCTAGTTTACCGAGTGGCCACGCGGCGTACGGACACGTGACGGACCGCATGCTGCAGGACACCATCCTGCACAGCCACTGCAAGCAGATCCTCGTGCCTtttcctCCTCAGAGCAGCGCTGCCGCAGACGAGCAGAAGGTGTTTGGCTTGTGGGAAAGCGGAGAAACCTTTGACAAGctCCGGCAGATTCTGTTCGAGATCTTCATGAAGAATTATCGCGTCAGGAGAAACGTGATCCAGACGCGTCTCACACAGGAGCTCGGAGACGCCGTCAACAAGACTGATGTGGACCGACTGCTCAAGgaGTGCTGCATTAGTCTGGGAGGGATGTGGTATCTGAAAGGCACCGTTCACTCCTGA
>TCONS_00009852
CCACGTGTTTGAGTGACTGCAGCTCTACGATCGGCAACATGGCAGAAGAGACAGCAGATAAGCACACAAATAAGGCTTCAGTCTGACCTGCTGGAGGACTTCATCTCCAAGACACTGCTGTACATTGAGACGGGCTTCTTCTTCTGGGTTCAGCCGCGTAGTGTTGATGATTTAGCGGATCCGCCGAGGCCTCGTGGTTGTTTATGTCTGAAGAGCTGCTAACTCATACTAGCATGTCGCTTCGTTTGCTGACTGAAGCGCATTCTCTTcttcattgagGTTTGAATCCTCCATCAGCATCTTCTCCTCTTTCTCAAGTCTTCATTATGGCCAGTGGAGACGATGATGATCCCATCATACAGGAGATCGATGTTTACCTGGCCAGAAGTCTGGTGGAGAAGCTCTATTTATTCCAGTATCCCGTGCGTCCCGGATCTATGAGCTACAATAATGTGACTCATTTGGGGGCCAAAATCAAACCCAAGCAGCAGAAAGTTGAGCTGGAGGTTGCGATGGACACCATGAGTCCAAACTACAGCCGCAGTAAAGGAGAGCAGATTGCGCTGAACGTGGACGGCATGTCTTCCGAGGACTCCAACGTCTACACAACGAAAATGATGGACAAGCAAACGTTCTCATCGATCCAGGCGACCACGAACACGTCTCGC

Function

symbol description
polr3e Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3E (RNA polymerase III subunit E).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005666 RNA polymerase III complex cellular_component

KEGG:

id description
ko03020 RNA polymerase
ko04623 Cytosolic DNA-sensing pathway
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030131-8462 Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3E (RNA polymerase III subunit E).

Ensembl:

ensembl_id ENSDARG00000037358

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009850 False 3274 mRNA 0.50 21 1014418 1034460
TCONS_00009851 False 2091 mRNA 0.54 20 1015283 1031970
TCONS_00009852 True 668 mRNA 0.50 7 1028580 1034383

Neighbor

gene id symbol gene type direction distance location
XLOC_005055 mettl9 coding downstream 14618 992442 ~ 999800 (-)
XLOC_005054 kdelr2b coding downstream 24269 982796 ~ 990149 (-)
XLOC_005053 daglb coding downstream 34629 964760 ~ 979789 (-)
XLOC_005052 SPAG9 coding downstream 53404 899223 ~ 961014 (-)
XLOC_005051 tob1b coding downstream 163961 847187 ~ 850457 (-)
XLOC_005057 NA coding upstream 38025 1072485 ~ 1085227 (-)
XLOC_005058 si:dkey-275b16.2 coding upstream 303881 1338341 ~ 1345562 (-)
XLOC_005059 RASSF4 coding upstream 314958 1349418 ~ 1361517 (-)
XLOC_005060 LO018020.2 coding upstream 334185 1368645 ~ 1370372 (-)
XLOC_005061 MED9 coding upstream 369346 1403806 ~ 1406480 (-)
XLOC_005043 NA non-coding downstream 605787 406187 ~ 408631 (-)
XLOC_005042 NA non-coding downstream 658863 337808 ~ 355555 (-)
XLOC_005037 NA non-coding downstream 735083 250081 ~ 279335 (-)
XLOC_005038 NA non-coding downstream 749217 262396 ~ 265201 (-)
XLOC_005035 NA non-coding downstream 833609 180200 ~ 180809 (-)
XLOC_005062 NA non-coding upstream 418440 1452900 ~ 1453339 (-)
XLOC_005063 CU694266.1 non-coding upstream 456012 1490472 ~ 1490588 (-)
XLOC_005067 NA non-coding upstream 965559 2000019 ~ 2001490 (-)
XLOC_005068 NA non-coding upstream 966176 2000636 ~ 2001824 (-)

Expression


Co-expression Network