XLOC_005057


Basic Information

Item Value
gene id XLOC_005057
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1072485 ~ 1085227 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011055
cacatgctcctctcgaaattagtttaaaactaaacttcacttaaacttaactcaactaatcgctttaaaagcattcggtttactcacttttttaagttaactcaactaatcgctttaaaagcattcggtttactcacattttttaaaagtaagtcaactaattgctttaaaaacaacaggtttaatCACCATCtttaaaatcaactaatcgctttaaaagcattgggttaactcacatttttaaagtaaaatcaactaatcgcttGGATTTACTCAACTTTTTAAAGTAGACTCAAATAATCGCttcaaaagcaacaggtttacccaCTTTCTTCAacataaagtcaactaatcgctttaaaaacattggatttactcactttttaaattaaactcaactaatcgctttaaaagcagcaggtttatcCACTTCATTAAGTAAAGTcagctaatcactttaaaagcgtTGGGTTTACACAGATTTTTTAAGCagactcaactaatcgctttaaaagcgtTGGGTTTACACAGATTTTTTAAtcaactaatcactttaagaAATGGGTTTGCTGACTTTTGatgcaaagtcaactaatcgctttttacagtgtatgcattcTGTACTTTTTATCGTGACATTTCATTCCTTTTTTTCTGGTAATTGCGACCTTTAGATTTCCTGATAATATAAGGTTTATTTGTTGAAATGAACAAACACTGTGTTTAGTAAAACATGTTGAACAACAATTGTTGTTAGACACACCTTTGGATATTAAACTGCCATTGCATAAATGTTGAACAAATGATGTAGGAGTGTTGTTCGACCCTAGAAGTCTGATATGCAgtatggcaatatatgcaaatacatttcaaaatgtgCAAACCTCACTAGTTAGAATTACGAACATGTATATGTTCACATGTAATAGCGATAATCTGATCTACATGTTCATATGGCATCAGATTTTTCTACGGGAGTGTTAGTTCATTTTAACTCACTGATttaaaccttactgtaaagtcgTACTGATTTACTTCAAGTTTGATATCGAATGTTTTTTCTTTATACTATTGTTTGcataaaagtgtgtgtttttcgtttggttttgtttggttttcaGAGTGAGAATAGACCAATTTCTGTTGTCAGCTATTTAAATGCAATCATGGATTTGTCTTGCTACATGCAATTAAACCGTAGAATGAATGAACACGCAGTAACGCCTGACGTCTTTAATGCTAGTCAAGCTACTATTTGAGTTGCATCTACAGTAACTATTGAAGTAACGCAGGCCTAAAAACGGCGAGGGAGAGCAGAGGAGAGAGTGAAGTGATTCTGAATGACAGCAGCTCAAAGGCCTCTTTGTTTTCATTATAAAAGAGGCATTAATTAAGGGAGGGAACCAAACAAATACAAAGCAGAAAATCATTACCACTGCCGTTACATGAAAGCGGAGCAGAAGAACAGACGCTTCCCTCTGCTGTTTGGATAAACAGCAACAAAAGCGGCAGAACATGCATAAATTGAGTGCAGGACGAGCGAATAAGTTCTTCATGCTGTGGAAATGAGCCAGAGTCTCCAGAGCAGATGGCTGTGGGTGGACCGCCGCTTCTTTTGCTTTCACTACGTTTCTATTGCAttgatagtttgaagaatgtaaTTGGCGTTGACATGTACGGCACGCATCACTGTGCTCGCTGACATTATTGGGTCCTAAAACTGGACAGCGTACAGGAAAATGTAGAGTCTGGTAAGATTTTGATTTATAACACCATTGTGGTGTTTATTGTTGAGCAGTTGTTGCAGCGTGCTCGACTGTTATGTTGACATTTAGATTGTGATTTCAGGGCAAGAGCCGATGCACAATGGCACAAAGATCCCTCATACAGTCAATTATACTAAAtatgtcaccatagcaactgtagaatcacaacagatcgagtactgtagttgttgtgttaccatagcaactgtagaatcgccacaacagatcaattactaaagttggtgttaccatagcaactgtagaattgccacaacagatcaaGTACTATTGttggtgtgttaccatagcaactgtaaaatcggCACAACAGATCAAGTACTGTAgttgctgttaccatagcaactgtagaaatgTCACAACAGATTAACTCAagtactttagttgttgtgttaccatagcaactagaatcgccacaacagatcaagtACTATAGttggtgttaccatagcaactgtggaatcaccacaacagatcaattactatagttgttgtgttaccatagcaactgtggaatcaccacaacagatcaattactatagttgttgtgttaccatagcaactgtggaatcaccacaacagatcaattactatagttgttgttgtgttaccatagcaactgtggaatcaccacaacagatcaattactatagttgttgtgttaccatagcaactgtggaatcaccacaacagatcaattactatagttgttgtgttaccatagcaactgtagaattgtcACAACAGATCAAGAACTATAGTTGGTGTTATCATAGCAactagaatcgccacaacagatcacgTACTATAGttggtgttaccatagcaactgtggaatcaccacaacagaacaattactatagttgttgtgttaccataacaactgtaGAATTGTCACAACAGATCAAGTACTATAGTtaatgttaccatagcaactctagaatcaccacaacaggtcaagtactttagttgttgtgttaccatggcaactgtggaatcaccacaacagatcaagtactgtagttgttgtgttaccatagcaactgtagaatcacaacaacagatcgagcactatagtggttgtgttaccatagcgactgtagaatcagaAACACAGCGAGGTGGATTTTACACATGCTTTTCGAAAGCAGTAATGAATCTGAGTGTACAttgagtgcactgtaaaaaaaatatgcataagttaacagtttctgtattttgtgattcatgcttttatttttttcccgcttttttctgtttctgaattgcattatgggatcttgatctttctacCAAAGacgtttaaccttgaaaagttgtaaaaagtgaacatttgtaatagtgtgcagtgctgtattgtctggATTGGTGTTGTTAATTACGCTACaataaccttgtaataaactgcagcacattttctgttattttacacacttatttctctagatattatatttcttatacattatttcaaatgactaaaatgtcagtaaaagtcactttgttaaactgatgATTTTTCAACAtgaaaagtcgacagagcagagatcagcatcccataatgcaattccccaccgtaaataaacggaaaatacaaaatattgttcaTTAGCAGAtacattttacagtgtgtgaCAGTCATGAGTCTTCACCTTGTTAAAGGAATATAGTAAAGTGGATGACTAGTCCTCCAGTAACTCCACCTTCATTTAATAATTTCCTCCAGCTTCACCCGCTCTGCCAATGACAACAACAGCCAGACAGAACCAACATTTACTTACCCACAATTCCACAGTCCAGTGGAGCCAGGCTGATGATGGCGATGCAGAAAAAAAGAGGAACGCATCAGGGTTGGCACTAGTACTCCACAAACCCTTTtgacagttcaagtcagaattattcgccctcctgtgaattattttccaaatatttcccaaataatgttgaacagattcaggagttgttcacagtatttcctctaatatttgttcttctggaaaaagtcttatttgttttatttgggctagaataaaagcagttcttaattgttttaaagccatgttaagctcaatattattggccccttcagcaatattagtgttggattgtctccagaacaaaccactgttatacaatgacttgcctaattaccctaactttaccctaattaccctagtgaagcctttacatgtcactttaagctgaacactagtgtcttgacaaatatccagtctaatattatttactgtcatcaaggcagagataaaattaatcagttattagaaatgagtttttaaaactgttatgattataaatgtgctgaaaactaAATCTCCTCTCTGTTAATAAAGAGAAAGTCATGCA
>TCONS_00009853
GTAATGTTGCCAGTTCCTCAGCCCGACGCGTCATGAAACCGAACAATTAGTGCGCTTATTGGGAATACTTCTGTGAGATCGCAGGATTTTAAAATGTCTAAGGAGCCGGATAAAGCTGCTTCTATCCCGGAGAGTTGTTTTCTGGATGATGTGGACTCTGATTCTCCGTCTTCTCCATCTGTGTCTGATGATCCAGGCTCGCGCGCCGCTCCGCCACCGGACACCGATGGAGACGCGCGGTTCCCTGTGTGCATCCGAGACGCGGTGTCGCAGGTCCTGAAGGGCTACGACTGGTCCCTGGTGCCGATGCCGATGCAGGGAAGTCGGTCTCTGAAGGACAAACCGCACGTGAAGAGACCCATGAACGCGTTTATGGTGTGGGCGCAGGCGGCGCGGAGGAAACTCGCCGATCAGTACCCGCATCTGCACAACGCGGAGCTCAGCAAGACCCTCGGGAAGCTCTGGAGGCTGTTGTCTGAGAGCGAGAAGAGGCCGTTTGTGGAAGAAGCTGAAAGACTGAGGCTGCAGCATAAGAAAGACTATCCTGATTATAAATATCAGCCGCGGAGACGCAAGAGTCTAAAACCTGGACAGAATGAAGCAGAAGCAGGAGCCGAGAAAAACCTTCATCACACGGATCCAATCTACAAGACGGAAGCGGGAATGAGAGCCATGCACCATCAGACCATCCATGGAGTTCAACCACACGGACCTCCAACGCCTCCAACCACACCGAAATCCGACCAGCATCAAAGCATGAAGCGCCTGTCGGAAAACGCCAGACAGAACATAGACTTCAGCAACGTGGACATTTCAGAGCTGAGCAGTGACGTCATCGGCAGCATTAGCCAGTTCGACGTTCGAGAGTTTGACCAATATCTGCCATTAAATGGGCACACGGAGAGCGGCGGCGGGCAGCACTCCAGTCCCGGCTGCTTCAGCACTTCTTTTCACCATCACAGCGGCGCTTCAGCGTGGAACAAACCGTCCGGGTCACCGTCCACATCCAGCGCAAACCAACAAAGACCTCTCATTAAAACTGAACAATTGAGTCCCTCTCATTATGGACAGTCTCACGGCTCACCGACTCAATCTGAGCTCAGCGACTGTGCCGACATGCAGAACTCGGCGTACTTCACCACATTTTCCGGCTACCCGGCTGGCATTTATCAGTATCCGTACTTCCACTCCACCAGACGGTCCTACATGACTCCAGTTCTCAACACTTTGTCCAGTCCATCTCATAGTCCTGGTACAAACTGGGAGCAGCCGGTTTACACGACTTTAACTCGGCCATGATGATGCGGATGAGGATGTCAGAAATGCAGAGAACTATGGGACAGAGCTTCACCCGCTCTGCCAATGACAACAACAGCCAGACAGAACCAACATTTACTTACCCACAATTCCACAGTCCAGTGGAGCCAGGCTGATGATGGCGATGCAGAAAAAAAGAGGAACGCATCAGGGTTGGCACTAGTACTCCACAAACCCTTTtgacagttcaagtcagaattattcgccctcctgtgaattattttccaaatatttcccaaataatgttgaacagattcaggagttgttcacagtatttcctctaatatttgttcttctggaaaaagtcttatttgttttatttgggctagaataaaagcagttcttaattgttttaaagccatgttaagctcaatattattggccccttcagcaatattagtgttggattgtctccagaacaaaccactgttatacaatgacttgcctaattaccctaactttaccctaattaccctagtgaagcctttacatgtcactttaagctgaacactagtgtcttgacaaatatccagtctaatattatttactgtcatcaaggcagagataaaattaatcagttattagaaatgagtttttaaaactgttatgattataaatgtgctgaaaactaAATCTCCTCTCTGTTAATAAAGAGAAAGTCATGC

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0032940 secretion by cell biological_process
GO:0046903 secretion biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:1903530 regulation of secretion by cell biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0051046 regulation of secretion biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051648 vesicle localization biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0017075 syntaxin-1 binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-130530-719 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in morphogenesis of an epithelium; negative regulation of transcription by RNA polymerase II; and neural crest cell development. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SOX8 (SRY-box transcription factor 8).

Ensembl:

ensembl_id ENSDARG00000105301

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011055 False 4148 lncRNA 0.36 2 1072485 1077114
TCONS_00009853 True 1982 mRNA 0.48 4 1072486 1085227

Neighbor

gene id symbol gene type direction distance location
XLOC_005056 polr3e coding downstream 38025 1014418 ~ 1034460 (-)
XLOC_005055 mettl9 coding downstream 72685 992442 ~ 999800 (-)
XLOC_005054 kdelr2b coding downstream 82336 982796 ~ 990149 (-)
XLOC_005053 daglb coding downstream 92696 964760 ~ 979789 (-)
XLOC_005052 SPAG9 coding downstream 111471 899223 ~ 961014 (-)
XLOC_005058 si:dkey-275b16.2 coding upstream 253114 1338341 ~ 1345562 (-)
XLOC_005059 RASSF4 coding upstream 264191 1349418 ~ 1361517 (-)
XLOC_005060 LO018020.2 coding upstream 283418 1368645 ~ 1370372 (-)
XLOC_005061 MED9 coding upstream 318579 1403806 ~ 1406480 (-)
XLOC_005062 NA coding upstream 367673 1452900 ~ 1453339 (-)
XLOC_005043 NA non-coding downstream 663854 406187 ~ 408631 (-)
XLOC_005042 NA non-coding downstream 716930 337808 ~ 355555 (-)
XLOC_005037 NA non-coding downstream 793150 250081 ~ 279335 (-)
XLOC_005038 NA non-coding downstream 807284 262396 ~ 265201 (-)
XLOC_005035 NA non-coding downstream 891676 180200 ~ 180809 (-)
XLOC_005063 CU694266.1 non-coding upstream 405245 1490472 ~ 1490588 (-)
XLOC_005067 NA non-coding upstream 914792 2000019 ~ 2001490 (-)
XLOC_005068 NA non-coding upstream 915409 2000636 ~ 2001824 (-)
XLOC_005069 NA non-coding upstream 982736 2067963 ~ 2479931 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_04840115_04844233 SOX8, SOX8A coding CI01000047 null 4839563 ~ 4844233 (-)