G24954 (eprs)


Basic Information

Item Value
gene id G24954
gene name eprs
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1208558 ~ 1209459 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU33572
CCCAGGCGTACTGTTATTTCTGCATTTGGACTCCACGCgctgctctctctcctgcttcATCTGCTCAGGAGGCGTGTTGTCGATGTAGGCCTTGCCCTCGGCAAGCAGCTGTTCAGCAAATCGCATTATGGTGGCAAAATGGTCGCTGGTGTACGTGAACTGGTCTGGATGGATCTGGAGCATGGAAACATCTTCCAGGATCACCTTCTCAAagtcctccttctccttctcagGGTTGGTGTCGTCAAAGCGCATGATGAGCTTGCCTTTAAATGTGATCTGGTAGTGCTGGTTGAGCAGAGCAGCCTTGGCATGGCCGATATGCAGGTATCTggccacagagagacagaaaaatgcttcctgttaaaggtgctctaagtgatgcaatgcgttttttaggctacaacatttttcgtcacatacagcaaacctctcctcactatctgctagctgcctgtcccctgaacacactgtaaaaaacatctcctcactatctgctagctgtctgtcccctgaacacactgtaaaaacatctcctc

Function

symbol description
eprs Predicted to enable several functions, including RNA stem-loop binding activity; proline-tRNA ligase activity; and protein homodimerization activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; prolyl-tRNA aminoacylation; and regulation of long-chain fatty acid import into cell. Predicted to act upstream of or within cellular response to interferon-gamma. Predicted to be located in cytosol and plasma membrane. Predicted to be part of GAIT complex; aminoacyl-tRNA synthetase multienzyme complex; and ribonucleoprotein complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human EPRS1 (glutamyl-prolyl-tRNA synthetase 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33572 True 539 lncRNA 0.49 2 1208558 1209459

Neighbor

gene id symbol gene type direction distance location
tdp1 tdp1 coding downstream 5476 1193040 ~ 1203082 (-)
LOC120556384 LOC104919714 coding downstream 17672 1176462 ~ 1190886 (-)
pdpr pdpr coding downstream 152264 1037755 ~ 1056294 (-)
mrpl46 mrpl46 coding downstream 178503 1021963 ~ 1030055 (-)
sv2ba LOC103359500,LOC101162590,LOC101062552 coding downstream 881830 301918 ~ 326728 (-)
LOC120555617 NA coding upstream 249705 1459164 ~ 1507908 (-)
rhpn2 rhpn2 coding upstream 534733 1744192 ~ 1774421 (-)
lrp3 lrp3 coding upstream 608972 1818431 ~ 1831946 (-)
trnat-agu_3 NA coding upstream 623862 1833321 ~ 1833394 (-)
dnaja2a dnaja2 coding upstream 625629 1835088 ~ 1846922 (-)
G24941 NA non-coding downstream 34004 1171389 ~ 1174554 (-)
G24942 NA non-coding downstream 38799 1165662 ~ 1169759 (-)
G24935 NA non-coding downstream 57221 1151022 ~ 1151337 (-)
G24934 NA non-coding downstream 57601 1150228 ~ 1150957 (-)
G24931 NA non-coding downstream 74769 1133519 ~ 1133789 (-)
G24955 eprs non-coding upstream 7067 1216526 ~ 1216930 (-)
G24974 NA non-coding upstream 31308 1240767 ~ 1242703 (-)
G24978 NA non-coding upstream 43259 1252718 ~ 1254624 (-)
G24987 LOC102205592,LOC101476278,LOC102787001,LOC102297232,LOC100534518,LOC101075605 non-coding upstream 57227 1266686 ~ 1266960 (-)
G24988 NA non-coding upstream 69110 1278569 ~ 1278817 (-)
pnoca NA other downstream 103391 1061104 ~ 1105167 (-)
ntrk3b NA other downstream 287009 706157 ~ 921549 (-)
LOC120555898 mctp2 other upstream 201215 1410674 ~ 1457108 (-)
LOC120556048 abcc12,LOC101479372,LOC101076737,LOC102203605,LOC100701509,LOC102304683 other upstream 300706 1510165 ~ 1555646 (-)
LOC120556047 abcc12,LOC102304683,LOC101479372,LOC102203605 other upstream 378085 1587544 ~ 1642348 (-)
cep89 NA other upstream 455311 1664770 ~ 1740839 (-)
G25228 NA other upstream 1066016 2275475 ~ 2277091 (-)

Expression


Co-expression Network