G24978


Basic Information

Item Value
gene id G24978
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1252718 ~ 1254624 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU33600
ttccgattaagacaaaAACATGGGCAACGTTCGAAACAATTGCACAGCcattttaatgtacacatttCCATAGATACACATAGCTTAGCCTCTATAATGATTGACAGGTGGGAGTGTAGCTACACCCTAAAGCATGCCCTGCTTTATCGTTAatacatttacaaaatgaacatcatgctgtattgaagatgCACAGATCTACCAAGACTAATGCTGTGTCTCAATTCAGATACTTCCAAGAGTACACTTACATGCGTACGCTATGTACTCACTTGTGTTGTGCACAAATTTGGACAGGGTAGTGTTGTCTCAAATCCCCCACAGCCGTTATGCACTGACCAGCAATGACTCTTCTTTTTAATGGTAAATTGCAGCCGACTTCACGAGTCACTTCATGGCAGAAATACACAGCTGGAGACAGCTGGTTGAACTTTTGTTGTAATAATCAAGGTGAAATCTGCTCCTGACCACTACCCTCACTTCCCCCCATACACCAGCTCTGGGTGTGTGACTTGTCCTGTGAGTCATTTTGTTGGATACCTTTGATAGTATCCCAGCATGGGTCAGCCTCTGATTACAATAAACAGGTGATATTCAGCGATGTCCATTACAAGGATTCATCAGTTTAACAGACTGGAGGACAATCCAATACATTGAAATCTCTGTTGATTGTGCTCCTCTTGCTATCACatgagagatgatgatgatgaggtcaCTAAGGTCACTGTGAAAGTCTTCTACATCACTTGTACTAAGGTGTGAATGGTTATAAAACCACTTTGGGATATCTGGACTCTATTGTAAGTATCTGATTGCAGAACTGGTGAAGCCTCTCACATGAGATGATGCTTTAACTCGTGTGCTACACAGGTTTAAGGTGACATCTGATATAGCATTCCAATTTAGAAgtacattttgagtgttttcaTACTTACAGTAAATGTACAGCATGGTGCAGTTTAAGTCAAATTCCAAAATCCAGAATACTACTTTGACACCAGTGGATTTAATATACTACATACATGAAAAGGAAATGTAGGGACTGAAGGGACTGTAGGGCTGACACTATTCACTGTGACATGTCTGAcaaataatacatacacataatgaTAACAGGCGTattcataaaaataaagaatccAATTATAATTTTGGTATTGTATGCTATAATTCTGACAAACAAATAACACTATTGCAGATATCTGCAACATAGTAGGTAACTGAATGCTCCCTTAAACTTGTTAAGAGTACCCTCTAGTTTTGTGCGTGTGCCTCCTTGGAGACTCAGGGACCTCAGAAAACCTGTGTAGTGATAGTCACAGAAGGCATGTAGCCCACTTGTACTGTCTTGAATATCCACTTTCTCTCATATTTATTATTtcgttgtgtatgtatgtatgtttattttttttatatatattttgttttattattttttttttttttttttgcaccggCAGCTTGTTGGGGATGGGTGGgggagaaaataagaaaaagtaTGTATGTTGAATATCTGTGTCCAATACTCATTTtctcaaataaaaacatgttaaaaaaaaaagagtacccTCTAGTGGCAAACAAAATCATACAGGGAGCTATTTGACATTGGAGAGACATTCTCAAGTAGACTGACCTGATATCAGTCCCAAATTGattgacatattttttttaatttgacaaCTAAAAATGATTATGATGAATTGTTTATGATAAATGTAAAGGTTTGATTACATCTGCAATGTTTCTAAAGATCTCTCGCGCAATGTTTGCATTCTCTCAAGAGAATTTAGGGAGGAAAGTTTAACTCAAAGGCCAACGTATTTCTGAGAGACAACAATGTAGCAGTCAATTTGAGCTTGAGTTGTTATTCGAGCTTGGCCCAAGCTCAAGTACAAAGAAATCAG

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33600 True 1907 lncRNA 0.37 1 1252718 1254624

Neighbor

gene id symbol gene type direction distance location
tdp1 tdp1 coding downstream 49636 1193040 ~ 1203082 (-)
LOC120556384 LOC104919714 coding downstream 61832 1176462 ~ 1190886 (-)
pdpr pdpr coding downstream 196424 1037755 ~ 1056294 (-)
mrpl46 mrpl46 coding downstream 222663 1021963 ~ 1030055 (-)
sv2ba LOC103359500,LOC101162590,LOC101062552 coding downstream 925990 301918 ~ 326728 (-)
LOC120555617 NA coding upstream 204540 1459164 ~ 1507908 (-)
rhpn2 rhpn2 coding upstream 489568 1744192 ~ 1774421 (-)
lrp3 lrp3 coding upstream 563807 1818431 ~ 1831946 (-)
trnat-agu_3 NA coding upstream 578697 1833321 ~ 1833394 (-)
dnaja2a dnaja2 coding upstream 580464 1835088 ~ 1846922 (-)
G24974 NA non-coding downstream 10015 1240767 ~ 1242703 (-)
G24955 eprs non-coding downstream 35788 1216526 ~ 1216930 (-)
G24954 eprs non-coding downstream 43259 1208558 ~ 1209459 (-)
G24941 NA non-coding downstream 78164 1171389 ~ 1174554 (-)
G24942 NA non-coding downstream 82959 1165662 ~ 1169759 (-)
G24987 LOC102205592,LOC101476278,LOC102787001,LOC102297232,LOC100534518,LOC101075605 non-coding upstream 12062 1266686 ~ 1266960 (-)
G24988 NA non-coding upstream 23945 1278569 ~ 1278817 (-)
G25039 NA non-coding upstream 203413 1458037 ~ 1458542 (-)
G25110 NA non-coding upstream 405870 1660494 ~ 1660735 (-)
G25111 NA non-coding upstream 406208 1660832 ~ 1661353 (-)
pnoca NA other downstream 147551 1061104 ~ 1105167 (-)
ntrk3b NA other downstream 331169 706157 ~ 921549 (-)
LOC120555898 mctp2 other upstream 156050 1410674 ~ 1457108 (-)
LOC120556048 abcc12,LOC101479372,LOC101076737,LOC102203605,LOC100701509,LOC102304683 other upstream 255541 1510165 ~ 1555646 (-)
LOC120556047 abcc12,LOC102304683,LOC101479372,LOC102203605 other upstream 332920 1587544 ~ 1642348 (-)
cep89 NA other upstream 410146 1664770 ~ 1740839 (-)
G25228 NA other upstream 1020851 2275475 ~ 2277091 (-)

Expression


Co-expression Network