adamts18 (adamts18)


Basic Information

Item Value
gene id adamts18
gene name adamts18
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 2240414 ~ 2312157 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU33890
tattgtcgTTTTGTCGAGTGTTTTCCTTCTGAAACCTCTAAAGCTACAAGCCATCACGAGAACAGGAAAGGACAGTAGCGTTTTAGCTTGCTTATATGTTGTATTTTTAAAGGCGTCTGGTTTGCATACGCCTTTATTTAAGTTATTATGGTTGGTAATATAtgattttacattttgtgagGTGTACAGTGGATCTGTGAGATGTTATTTCTATGTTTTTTGGGTATATCATAGGACTGTGCCAGTCACCCTTGGATCCACGTTATGAGATTTTATATGAGGCATTAGTAATCAGTGGTCAGATGCCTTCTGCACTtcctccttcacacacactctctccgcTTGTTATGTTTACTGCTGCTGAATCATTTGGAATGAGTCACGTTAACGCTATGAAAACATGCCTATCTGTgtacataaaacattttatccAGTCACGTTGTAAGTGGTCGCTCTCCTGTACGATTATGGTTAATACA
>TU33891
tattgtcgTTTTGTCGAGTGTTTTCCTTCTGAAACCTCTAAAGCTACAAGCCATCACGAGAACAGGAAAGGACAGTAGCGTTTTAGCTTGCTTATATGTTGTATTTTTAAAGGCGTCTGGTTTGCATACGCCTTTATTTAAGTTATTATGGTTGGTAATATAtgattttacattttgtgagGTGTACAGTGGATCTGTGAGATGTTATTTCTATGTTTTTTGGGTATATCATAGGACTGTGCCAGTCACCCTTGGATCCACGTTATGAGATTTTATATGAGGCATTAGTAATCAGTGGTCAGATGCCTTCTGCACTtcctccttcacacacactctctccgcTTGTTATGTTTACTGCTGCTGAATCATTTGGAATGAGTCACGTTAACGCTATGAAAACATGCCTATCTGTgtacataaaacattttatccAGTCACGTTGTAAGTGGTCGCTCTCCTGTACGATTATGGTTAATACAACTTGATCATCTTATCCATctggctttttttctttctttcctgcaTTCTCTCTATCGATCACAGCCACACTGAGG
>XM_039795089.1
TGCAGCCCGGCTGAGAGCCCGGCTGAGTGCTCAGTCAGCGCTCCTCCCGTGCTGGTGATCCCCAACACACCGCTACCCACCGctcctcctcacacacacacacaaacacacacacacacacacacacacactcatgagtGCGCGTTGCGTCTGTGCGCAACACCGGCTGCTGCAACCTGCCGACTTCACCTGAACCAGCAAAGCGGGGAACAGAACCACTTAACAATGCGTGCATATTGCATTATGCGATACCGAAGGTTATTACTACTTTTGCGCTCTTTTAGGAGGTAACAGGGGAGGTGTAAGCGTGCATGCCATCACCATGGATTGCCTTTTTCTTCTGATATGGACTTTACCCATCCCGCTGGTCGGCTGCACCTCAGTCAAGCTCCTGTCCACCCTTTTATCCTGGAATATCATCAAGaCGCTGCACATTTACTGCTCCCACACCGTTACAGCCAGCTATTCATCCAGCGACAGCCACGGATTAAATCACGcccgtgtgTCCAGGCGCAGCCATCGCAGCAGGAGgtccctctcttcttctctgcaCTACCGGCTCTCGGCCTTCGGGCAGGACATGCACCTGGACCTGCATCCGTCCTCTGTGGTCGGCCCCGGGTTCACCGTGCAGACGCTCGGCTCGGATGGCATCGCCACGGTGACGCGTGATGTAGGGTTTCACAACTGCCTGTATCAGGGTTTTATCCGTAACCTGTCGGCCTCCTCGGCAGCCATATCGACGTGTTCTGGACTGTCAGGTTTGATCCGTGTGTCCCAGGAGGAGTATTTGATTGCCCCGCTACCCCAACATCTGGCTACACAACACAACTACAGCACCCCTGATGGTCACCACCCGCATGTAGTCTACAAACGCTCAGCGGAACACATTGTCCACAGAAGATCTAGCACCGGTTCTTCCACAACTGGCAACCCGcaccttcatcatcatcatcagcagcagcagcatcaccaCCATGACTACCAGCATGGAAAGCTGCAGAGGCAACACTTCTGCGGACGCCGCAAGCAATACGCTCCCAAGCCTCCTGCTGAGGACAGTTTCATCATGCCTGACGAGTTTGCGATACCCGAGGCAGAAGGGCCAGGAAGGGCAAAGAGATCGCCCATCAACTCCAACAGGGTGGGGGGTCTGAATGTGGAGACCCTGGTGGTGGCAGACAGGAAGATGCTGGAGAAACATGGCAGGGACAACGTCACCACCTACGTCCTCACCGTCATGAATATGGTTTCCAGTCTATTCAAAGATGGCACCATTGGGACGGACATCAACATAGTGGTGGTTAGCTTGTTACTCCTTGAACAAGAGCCGCTTGGCTTGACCATCAATCACCATGCTGACCAGTCCCTCAACAGTTTCTGTCAGTGGCAGTCAGGTCTGGTGGGAAAAGGTGGTAAACGGCATGACCACGCTGTTCTCCTCACCGGATTGGACATCTGTTCCTGGAAAAATGAGCCCTGTGACACCCTGGGCTTTGCCCCCATCAGTGGGATGTGCAGCAAGTACAGGAGTTGTACCATCAATGAGGATACAGGACTGGGCTTGGCCTTCACCATCGCTCACGAGTCTGGGCACAAtTTTGGGATGATCCATGATGGTGAAGGGAACCCTTGTCGCAAGACAGAAGGCAACATTATGTCTCCCACTCTGGCTGGAAACAACGGAGTCTTCTTCTGGTCCACCTGCAGTCGACAGTACCTGAGCCGCTTCCTTGGAACAGCCCAGGCATCCTGTCTGGTGGACGAGCCCAAGCAGATCGGTCAGTACAAGTACCCTGAACAGCTTCCCGGGCAGCTGTACAACGCAGACACGCAGTGCAAGTGGCAGTTTGGCTCCAAGGCCAAACTGTGCAGCCTGGATTTTGTCAAGGACATCTGCAAGTCGCTGTGGTGTCATCGCACAGGGCACCGGTGCGAGACCAAGTTCATGCCTGCTGCAGAAGGCACCAGCTGCGGTCCTGACATGtGGTGTCGGAGGGGTCAGTGTGTTAAATACGGGGAGCATGGTCCAAGGGCGGTCCATGGCCAGTGGTCAGCCTGGTCTCAGTGGTCTGACTGCTCCAGAACCTGTGGAGGAGGGGTCATGTACAGGGAGCGCTCCTGCACCAGTCCAAGgcCACAGAACAACGGTAAATTTTGTTCCGGCTCCAGCCGTCTCAACCAGCTGTGTAACTCTCGGCCCTGCCCTATCAACGCTGTGGACTTCCGGGCCCAGCAGTGCGCTGAGTACAACAGCAAGCCCTTCAGGGGCTGGTACTACAAGTGGAAGCCCTACACCAAAGTGGATGATGAAGACATCTGTAAGCTGTACTGCATTGCAGAAGACTTTGACTTCTTCTTCGCCATGTCCAGCAAAGTCAAAGACGGCACCTCCTGCTCTGACCACAAAGGAGATGTCTGCATTGATGGAGTGTGTGAGgcagtAGGCTGTGACCAGATTCTGGGCTCCAAGGCCTCTCTGGACGCCTGCGGAGCCTGTAAGGGAGACAACTCCACTTGCAAGTTCTTTAAAGGCCAATACACCCTTCAACACAGAGCCAACGAGTACTACTCCATGGTAACAGTCCCCGCTGGGGCACGAAGCATTCACATTCAGGAAATGGAGGTCTCCACTAGTTACTTGGCCGCCCGCTCTCTAAAGAGGAACTACTACCTGACCGGGGACTGGACTGTGGACTGGCCGGGGAAGTTCCATTTTGGTGGGACCGTGTTCGACTACCAGCGCTCTTTCAACAAGCCGGAGAGCCTTTATGCCGCTGGACCTACTAATGAGACGCTGGTGTTTGAAATCCTTCTGCAGGGAAAGAACCCGGGTGTGGTGTGGGAGTACACCCTGCCTCGCACTGAGAAGAAACCCGACTACAGCTGGGGTGTGGTGCGCTCTGACTGCTCTGCTCCCTGTGCTGGagGTCGTATTTCAACCAAGGCTATCTGTCTGCAGGACCAGAAGGTTCAGGTCAACTCCACCATGTGCAATCCCCACACCAGACCGACACTGGGCTCCCATCTCTGCAACACACAGCCCTGCCCTGCataCTGGGCGACCGGAGACTGGGGTCACTGCAGTCGCTCCTGTGGAGGAGGTCAGCAGACCAGGACCCTGCGCTGCCTGAGGAAGGTGACCTATCAGAGGGAAGAGGCGGTGGTGCACTCCTTCTGCCCCGTCATCTCTCCGGCCCAGGTCCAGCCCTGCCACACCCAGGCCTGCCCGCCCGAGTGGAGCACCGGATCCTGGTCACAGTGCTCCAAGACCTGTGGCCGTGGCCTGAGGAAGCGGAGCGTGTTTTGCCGCAGCACTGATCCTGGGGCCAAAGCGGTGGTGGTGCCCGACAGCATGTGCAGACAGCACCACAGACCCAAAGCCCAGGAGACCTGCGTCCTGCGGCGCTGCCCCAAGAACGAAAGGCTGCAGTGGATCCCTACTCCCTGGGGAGAGTGCTCCAGTTCTTGTGGCTCAGGCATCCAGAAAAGAGAGCTTCGCTGCGGGGAGAGAGACTCAACGGGAGGGTATGTGGAGTTCCCCATACGTAGGTGCAGGAACGTGGCTAAACCTCTGGTGGATCTCCAGCAGGGCTGCAACCGAGGTCCGTGCCCAGAGCTCCCTCGGGTCGTCCCTGGCAGAACCAGCTCCAGTGCTGCGGTCTTGGGCTGGTACTCATCTCCCTGGCAGCAGTGCTCTGTGTCCTGTGGGGGAGGAGTCCAGACTCGGTCCATCCAGTGTCTCCGGCAGGGTCGCCCCGCAGCTGGCTGCCTGCCCCACCAGAGGCCTGTCACTTCTAGGGCGTGCAACACACACTTCTGCCCCGCTGCTCCCCCGGCTCCGGCACAACGCCCCAGCCGGGTCGCAGCTGCTGGACCAACACTGAAAGATGAACAATGCATCGACCATTTCAGCTGGTGTCACTTGGTTCCCCAGCACGGCGTTTGTAACCACAAGTTCTATGGACAGCAGTGCTGCAAGTCCTGCTCCAGCAAGAGGCAATAGAGCACTGATACCTCTGAGTCTGTGGCTCTGGGGCCTCTGAGGGACACAACACCATAAAGGCAGTTTGGGGGCCATTACTCACAACACACAGAACTGCGCTCGACGTGTTTTCTTCCTGGAGTACTTGACTAAAGAGTTTTGAAAAGaagtattaaaaaaagagagagagaaacaatggACTCTTTTTCATTAAAGAAGGCAGTGTGGTCAAGCGGTCAAGTCATCACGTCACGGATCACATTGGAACTGGAAAGACAATGCAAATCACAGAGCATCTGAAGACTTGttgttgttatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtattgtcgTTTTGTCGAGTGTTTTCCTTCTGAAACCTCTAAAGCTACAAGCCATCACGAGAACAGGAAAGGACAGTAGCGTTTTAGCTTGCTTATATGTTGTATTTTTAAAGGCGTCTGGTTTGCATACGCCTTTATTTAAGTTATTATGGTTGGTAATATAtgattttacattttgtgagGTGTACAGTGGATCTGTGAGATGTTATTTCTATGTTTTTTGGGTATATCATAGGACTGTGCCAGTCACCCTTGGATCCACGTTATGAGATTTTATATGAGGCATTAGTAATCAGTGGTCAGATGCCTTCTGCACTtcctccttcacacacactctctccgcTTGTTATGTTTACTGCTGCTGAATCATTTGGAATGAGTCACGTTAACGCTATGAAAACATGCCTATCTGTgtacataaaacattttatccAGTCACGTTGTAAGTGGTCGCTCTCCTGTACGATTATGGTTAATACAACTTGATCATCTTA

Function

symbol description
adamts18 Predicted to enable metalloendopeptidase activity. Acts upstream of or within angiogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including anterior axial hypoblast; digestive system; nervous system; neural keel; and pleuroperitoneal region. Orthologous to human ADAMTS18 (ADAM metallopeptidase with thrombospondin type 1 motif 18).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08632 ADAMTS18; a disintegrin and metalloproteinase with thrombospondin motifs 18

RNA

RNA id representative length rna type GC content exon number start site end site
TU33890 False 479 lncRNA 0.39 1 2311604 2312082
TU33891 False 554 lncRNA 0.39 1 2311604 2312157
XM_039795089.1 True 4846 mRNA 0.54 24 2240414 2312096

Neighbor

gene id symbol gene type direction distance location
phkb phkb coding upstream 57660 2039463 ~ 2182754 (+)
slc7a10a LOC104919817,LOC103369274 coding upstream 422420 1789953 ~ 1817994 (+)
zgc:165481 LOC103369239,LOC108241605,LOC103379234 coding upstream 542055 1674741 ~ 1698359 (+)
LOC120556440 LOC104962514,LOC103369193,LOC107381980,LOC106931206 coding upstream 855339 1378010 ~ 1385075 (+)
LOC120556244 LOC103369184,LOC102786692,LOC100700148,LOC101476567,LOC102297530 coding upstream 875688 1312448 ~ 1364726 (+)
LOC120555875 LOC103368003,LOC100711702 coding downstream 911712 3223869 ~ 3236019 (+)
adgrg1 NA coding downstream 938451 3250608 ~ 3273178 (+)
slc7a6 slc7a6,LOC104919890,LOC103355407,LOC102782072 coding downstream 967919 3280076 ~ 3305488 (+)
LOC120555909 NA coding downstream 1109046 3421203 ~ 3422406 (+)
mtss1lb LOC102779958,LOC108237900,LOC103462242,LOC103355402 coding downstream 1311477 3623634 ~ 3724143 (+)
G25220 NA non-coding upstream 24866 2215247 ~ 2215548 (+)
G25203 NA non-coding upstream 56644 2182806 ~ 2183770 (+)
G25144 NA non-coding upstream 465974 1769282 ~ 1774440 (+)
G25008 NA non-coding upstream 824667 1413095 ~ 1415747 (+)
G25011 NA non-coding upstream 854150 1386048 ~ 1386264 (+)
G25237 NA non-coding downstream 2652 2314809 ~ 2316135 (+)
G25248 NA non-coding downstream 275715 2587872 ~ 2588152 (+)
G25249 NA non-coding downstream 276524 2588681 ~ 2611537 (+)
LOC120555634 NA non-coding downstream 327927 2640084 ~ 2640928 (+)
G25262 NA non-coding downstream 404913 2717070 ~ 2717460 (+)
G25204 NA other upstream 157095 2081958 ~ 2083319 (+)
G25173 dnaja2,LOC106524269 other upstream 397603 1839333 ~ 1842811 (+)
mapk8ip1b mapk8ip1,LOC102793463 other upstream 2155988 11843 ~ 84426 (+)
mmp15b mmp15,LOC104948393 other downstream 1169140 3481297 ~ 3518086 (+)
G25431 NA other downstream 1472776 3784933 ~ 3785542 (+)
G25512 NA other downstream 2258216 4570373 ~ 4575645 (+)
tshz3b tshz3 other downstream 2481658 4793815 ~ 4837285 (+)
G25708 NA other downstream 3722052 6034209 ~ 6035193 (+)

Expression


Co-expression Network