LOC120555484 (slc7a6os,LOC102781591)


Basic Information

Item Value
gene id LOC120555484
gene name slc7a6os,LOC102781591
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 3309375 ~ 3379915 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU33989
GTTCAGCATTCATTCATCtgtccgtccatccatccacaCACACCAGTTCTCCCTCATCGGTGTAGGCCCTGACAGACAGGATGTCCTGGATCCAGCCTGGCGCGACCATTTCCTGGTAGTAGAGATCGTAGACGTAGTCGTCGTCCTGCTCCCGGTGCTCTTCCCCCAGTCTCTCTCCGGTGATGCTCAGGTGCTCCCGCAGCATCTTGGTGCTGTTACACAGGATCACTTCTGGGTCTGAGGACAGcgtCTTGCTAGATTTGTCCTGCTCCTCTACATCCTCATGTAGGAGATCAACCACCTGGATTGCACCGAGACCCAAACATTTGTCCTGCTCTTTCCCAGTGTCCTCCACGCCATCAGAAGCTTCCGTCTGGTTGGTTTGCTGCTCCGCCGGGCTGGACAGCCCTGTACGGTGGCTGGAGAGGATTCTGTAGCGTTCCTCCCTCCGGGTGCTCCACTTTGCGCTCCGGAGGTCCCCGATGATCCGTTGGGAACTGGCAGCAGAGGGGCGCAGTGCGTGGGCCATGCGAGGCCGAGCCAAAGCCTGTCGCACCTGTGTCTGAACAGGAGCATCCTGTGTCGCTACGGTCGCCACGAGTTTGAAGACAGAATTTTCCACCTCGGCTTCATTCGGCTCCGGTACCGTTTCCCCTGAGCCCTGGGACGTCTCCGGCCGGATACGTTTACACGCCAACAACAACGCATCTGCTGGGTCGGTCCCCCTTTTCCTCTTGACTCGCAGAATCGTCGTGTTCGGATCCATGTTGTTCCTCTGTCCGCTGAGTTTGTCTGGTTTGTCTGGCAGACTGGGAGGAGGGAAATGAGGAAAGCTCCG
>TU33993
GGGGATTTCTGAACCAACTCTCACACCCACAACAAAACTTGCGTCACACTTTCACATTATGCAAAAATCTAACAcgcacacaaatatacacacacacacagcaccctAAATTGCAACCACACGCGGCCCAAGACGTCTTCATAACAGAAGTGTTAACAACACAGAGCATACAAGGCATATCACACTAATGTGCAAcattattaacacacacacacacacacacacacacacgcttctgTGTGccaaagtcgccggacgccacaatcttctgaacatagtcatactgagaaatacagagagagctgtgtggagcagatagccttaattagctttgtggCAAATCAtgtgaatgtaacggacgtttattaacatcaaaaagttacgcactaaagc
>TU33995
GGGGATTTCTGAACCAACTCTCACACCCACAACAAAACTTGCGTCACACTTTCACATTATGCAAAAATCTAACAcgcacacaaatatacacacacacacagcaccctAAATTGCAACCACACGCGGCCCAAGACGTCTTCATAACAGAAGTGTTAACAACACAGAGCATACAAGGCATATCACACTAATGTGCAAcattattaacacacacacacacatccacatggaacaaacacccacacacaaattcacTCCACcacagttaaaaaagaaaagaaagaaaaagacactCTGGATCCTTCTGGAAATGACACCTACTCCTTCCCCATCTGTGTAGTAGAGCGGAGGATGGATTTCACTCTAAAGAGCTTTAGCGATATATGGTATGGTAACAACGGGGGCGTTAAGAACAGGATGTTCTCAgtacatttgtatttctttgtCAAATTTCACTTTAAGATGGAATTTCTTGAAGTTCATTTTTATTTACCTCAAGGTttgcatttacatttattattattattgttattatgtgCCATTGCAATAGTAGTTTCCCTCCACTCTCGCCTACACAGAGGAATATGGAGTATGGTGATCATTGGTGTTGAGTGCATTGGGAAGATCCACTGACAGGCAtttggagaggggggggggtaagGGATAGATCAATCGGAATTATATTTgtctccatcatcatcatcctcctcaTGGTCATCTTCACCGGGGCAGTCCAGCTCGTGCAGCACTTCCCTCTGGTAGCGCCCCCAGCTCCTCTGGCTGTACGAGTGCTCCTCCTCCCAGTAACCACCGTAGCGCTCCTCTCGGTCGCTGTCTGCGTCGCTCCCCTCGTCGGGGTAGTCATTCCTCCAGTTGCCTTCCTCGTTTTCATCGTCCTCGTCTTCATACACCTCCTCTTCATGAACCACAATGTCAGGCACCTGGGAAACAACAGGCCGTTTATCTGAAAGCCTCCTTTCTCTTGATTCAGCATTGGTTTT
>TU33996
GGGGATTTCTGAACCAACTCTCACACCCACAACAAAACTTGCGTCACACTTTCACATTATGCAAAAATCTAACAcgcacacaaatatacacacacacacagcaccctAAATTGCAACCACACGCGGCCCAAGACGTCTTCATAACAGAAGTGTTAACAACACAGAGCATACAAGGCATATCACACTAATGTGCAAcattattaacacacacacacacacacacacacacacag
>XR_005638717.1
ATGCGAGGCCGAGCCAAAGCCTGTCGCACCTGTGTCTGAACAGGAGCATCCTGGTGAGGAGATGACAAAAAgatggcgctaacacacaCGCTGAAGTTTCCCTGCCCCTCTGAACTGACCCAAGACATCATCAcatccagccactGCTTTCAGTCCCTCCACTACCTGCCCGTAGCCCCCAGAGCTTAAACACCACCAGCCCCAGCATGCAGGAATTACACAGTATCATCAGCACACATGGGACGG

Function

symbol description
slc7a6os Acts upstream of or within midbrain-hindbrain boundary structural organization and somite development. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be integral component of membrane. Is expressed in axis; central nervous system; eye; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy. Orthologous to human SLC7A6OS (solute carrier family 7 member 6 opposite strand).

NR:

description
PREDICTED: probable RNA polymerase II nuclear localization protein SLC7A6OS

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33989 False 838 lncRNA 0.58 3 3314354 3317944
TU33993 False 393 lncRNA 0.43 2 3309375 3315243
TU33995 True 998 lncRNA 0.45 2 3309375 3313695
TU33996 False 233 lncRNA 0.43 2 3309375 3379915
XR_005638717.1 False 246 lncRNA 0.55 3 3317065 3321414

Neighbor

gene id symbol gene type direction distance location
slc7a6 slc7a6,LOC104919890,LOC103355407,LOC102782072 coding upstream 3887 3280076 ~ 3305488 (+)
adgrg1 NA coding upstream 36197 3250608 ~ 3273178 (+)
LOC120555875 LOC103368003,LOC100711702 coding upstream 73356 3223869 ~ 3236019 (+)
phkb phkb coding upstream 1126621 2039463 ~ 2182754 (+)
slc7a10a LOC104919817,LOC103369274 coding upstream 1491381 1789953 ~ 1817994 (+)
LOC120555909 NA coding downstream 41288 3421203 ~ 3422406 (+)
mtss1lb LOC102779958,LOC108237900,LOC103462242,LOC103355402 coding downstream 243719 3623634 ~ 3724143 (+)
LOC120556182 LOC101467318,LOC102294465,LOC102206054,LOC108237897 coding downstream 493117 3873032 ~ 4152064 (+)
LOC120555911 LOC102783822,LOC103462246,LOC106925612,LOC102294465 coding downstream 783761 4163676 ~ 4254074 (+)
LOC120555425 NA coding downstream 953150 4333065 ~ 4341288 (+)
G25288 NA non-coding upstream 168988 3139689 ~ 3140387 (+)
G25281 NA non-coding upstream 337465 2971607 ~ 2971910 (+)
G25279 NA non-coding upstream 339117 2969770 ~ 2970258 (+)
G25262 NA non-coding upstream 591915 2717070 ~ 2717460 (+)
LOC120555634 NA non-coding upstream 668447 2640084 ~ 2640928 (+)
LOC120555485 NA non-coding downstream 2741 3382656 ~ 3388513 (+)
LOC120555486 NA non-coding downstream 8607 3388522 ~ 3389725 (+)
LOC120555487 NA non-coding downstream 33097 3413012 ~ 3414535 (+)
G25380 NA non-coding downstream 83142 3463057 ~ 3463523 (+)
G25418 NA non-coding downstream 234331 3614246 ~ 3614516 (+)
adamts18 adamts18 other upstream 997218 2240414 ~ 2312157 (+)
G25204 NA other upstream 1226056 2081958 ~ 2083319 (+)
G25173 dnaja2,LOC106524269 other upstream 1466564 1839333 ~ 1842811 (+)
mapk8ip1b mapk8ip1,LOC102793463 other upstream 3224949 11843 ~ 84426 (+)
mmp15b mmp15,LOC104948393 other downstream 101382 3481297 ~ 3518086 (+)
G25431 NA other downstream 405018 3784933 ~ 3785542 (+)
G25512 NA other downstream 1190458 4570373 ~ 4575645 (+)
tshz3b tshz3 other downstream 1413900 4793815 ~ 4837285 (+)
G25708 NA other downstream 2654294 6034209 ~ 6035193 (+)

Expression


Co-expression Network