mmp15b (mmp15,LOC104948393)


Basic Information

Item Value
gene id mmp15b
gene name mmp15,LOC104948393
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 3481297 ~ 3518086 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU34089
ACAGCGAACAGCGGACCACTGTCCGTCCTGCTCCGGTAGGGAGACGACACAGAGCCACTGACTCAGGACGTGACTGATAGCAACTAGCAAAGTATCTGCTTCCGAGAAGATTTCCTCTGGGAAAATGGGAAAAACTGGATGTTGAGGGGAAAGAAACCgtcaaatatttgtattttctaCAAGAGAGGTCGCGAGCTAAAGCAGCCGTGTTCGCTTCTGCTGGAGGAGTCGGTCAAGTGCGGTGAACTTTGGGCTTATCATTTTCTTGTTTGATAGTTTGCAACTTTCTCAGGGTATATGTAACTGCACTTTATTCGGCATTATCACGACGGGAGGTTAATATTAACCCACTGGATTTGAACATGTTTGCAGTTAATGATTTACTAAAAAGCGTTCTTGTGGTAGACCCACTTTGCTGATAGGCATTTTGCTGGAGGCATTGTGGCTCTTTTGTAAAGTGCACTTTCAAGGTTAGCCTGCTAATAGTAACGCAACAACTTTGATGTTGATTAAATGAGACGTGCGCTCTAGTGGGTAACTCCCGCTAGAGATACAGCGCAGTAGTCTAAAGAAAGGTGAGACAGTCTGTAaattgtgaaaagaaaaaagagaaaaacttaAAAAGGAGAAAGCTGTATGAGCATTGAGCACGTGAGTCAACTCACCGACATTTATGGAGGGGCAGTTTCTAGCGCTGCTCTGACTGTAAATCTGGAATGGAGCtctttcccatgatgcaagtgCACTGTTGAGGACTGTCGTAGCATTCTTGCTAGGGGAAttagtttaaaaacagtttGTTCGCTACCGCTTGAACTAGCAATACTGCGGGTGAAAACTTGCCGAAGGCATCTTGTTACACCGTCGGGAGAACGACGACTGATTTCCCCCCTCGCGCCCAGACCATGGCCTCCACCTTATGGAACAGCTGCTTCTCGTTGCTCTGGAGACGGACCTTCCTCGCGCTGTGGCTGTGTGCGCTCGTGGCGCGTGGAGCGGAGGATGGCAGCGCCTTCAACTCAGAGTAATCATCACGATACAAAGCAGAATCAACAAGACCCAGCATCATTTCTACAACAAGTTATCCGGTGGCTAGGGCCGCGACGATAACCGCATCGCCGCAATACCGCGGTGACGTGACGCTACTGGGGTTATGACATCATCACCGCATTCACcggatttctttttcttttttttttttttgctggtgaAAGTTACGGAAATGCATATGTTGTGTGATttgaaatataataaacacaATAATCATTGTTTAGTTATCATCATTGACTGAAGGGATTCTGGAGGAGAAAAACTTAAGTTGCCGTCACTTCAGCTTCACACGAAAGGGAGGGACAGTCCGTTAAAGCTATGGggtatttgttttgtgtttgtccaattattataaattatttctACTTCCAATGAATATATAATACACAGTAGGGAGGGGAGGGACATGGCATACAGCTGCAGTGTTTTTACAATTGCACTTTACACTGCATTAATTAAAATCCACATCGTTACAGCCCTACTCTTGGCTATTTTTATTGTTGCTCATAATGTGTCTTTCTCCACCCGATTTGGACCTCTTAGCCATTATGGAAACATAATTTTTTCCTCATTTCGGTGTGTCAC
>XM_039794972.1
CATCTCCACGTTAGGTACCGAAACACAGCGAACAGCGGACCACTGTCCGTCCTGCTCCGGTAGGGAGACGACACAGAGCCACTGACTCAGGACGTGACTGATAGCAACTAGCAAAGTATCTGCTTCCGAGAAGATTTCCTCTGGGAAAATGGGAAAAACTGGATGTTGAGGGGAAAGAAACCgtcaaatatttgtattttctaCAAGAGAGGTCGCGAGCTAAAGCAGCCGTGTTCGCTTCTGCTGGAGGAGTCGGTCAAGTGCGGTGAACTTTGGGCTTATCATTTTCTTGTTTGATAGTTTGCAACTTTCTCAGGGTATATGTAACTGCACTTTATTCGGCATTATCACGACGGGAGGTTAATATTAACCCACTGGATTTGAACATGTTTGCAGTTAATGATTTACTAAAAAGCGTTCTTGTGGTAGACCCACTTTGCTGATAGGCATTTTGCTGGAGGCATTGTGGCTCTTTTGTAAAGTGCACTTTCAAGGTTAGCCTGCTAATAGTAACGCAACAACTTTGATGTTGATTAAATGAGACGTGCGCTCTAGTGGGTAACTCCCGCTAGAGATACAGCGCAGTAGTCTAAAGAAAGGTGAGACAGTCTGTAaattgtgaaaagaaaaaagagaaaaacttaAAAAGGAGAAAGCTGTATGAGCATTGAGCACGTGAGTCAACTCACCGACATTTATGGAGGGGCAGTTTCTAGCGCTGCTCTGACTGTAAATCTGGAATGGAGCtctttcccatgatgcaagtgCACTGTTGAGGACTGTCGTAGCATTCTTGCTAGGGGAAttagtttaaaaacagtttGTTCGCTACCGCTTGAACTAGCAATACTGCGGGTGAAAACTTGCCGAAGGCATCTTGTTACACCGTCGGGAGAACGACGACTGATTTCCCCCCTCGCGCCCAGACCATGGCCTCCACCTTATGGAACAGCTGCTTCTCGTTGCTCTGGAGACGGACCTTCCTCGCGCTGTGGCTGTGTGCGCTCGTGGCGCGTGGAGCGGAGGATGGCAGCGCCTTCAACTCAGAGGCGTGGCTGAGGATGTACGGTTACCTGCCCCAGGCCAGCAGACAGATGTCCACCATGCGATCAGCTCAGATTCTGTCCAACGCAATCAGCGACATGCAGCGCTTCTACAGCCTGGAGGTCACTGGACAGATGGACCCTCAAACCATCAGTGCTATGAAGAGACCCCGCTGCGGTGTGCCTGACAAGTTCGGAGGCCAGATCAAAACCAACGTGCGGCGGAAACGCTACGCCCTCACGGGACATAAATGGAACAAGAGCCACCTCACTTACAGTATCCAAAACTACACTCCCAAGATTGGAGAGTATAACTCATTCGAAGCCATCCGTAGGGCGTTCAAAGTCTGGCAGAGTGTGACCCCATTGACTTTTGACGAAATTCCCTACCAGGAGATCAAATATGGACGCCGCAAGGAGCCCGACATTATGATCTTCTTCGCTTCGGgttttcatggagacagctcTCCTTTTGATGGGGAGGGAGGCTTCCTAGCCCATGCCTACTTCCCTGGACCTGGAATGGGTGGGGACACACACTTTGACTCCGATGAACCATGGACCATAGGAAACCACAACGTACAAGGTAATGACCTCTTCCTGGTGGCAGTCCACGAGCTGGGCCACGCCCTTGGTTTGGAGCACTCCAACAACCCCCTGGCCATCATGGCTCCCTTTTACCAATGGATGGAGACGGAGAACTTCCAGTTGCCTGACGACGACCTGCGGGGCATACAGCAGATCTATGGTCAACCAGACAGCGGCCCCACCCAGGCCCTGCCCACCGTGACACCCCGTCGCCCAGAGCCCAGGCCACCTCAAACCCCGCCTCGGCACCCTGACCGCCCCAGGACCACTGAAAGACCAGATCACTATGGACCCAATATCTGTGAAGGGAACTTTGACACGGTGGCTATGCTCCGAGGAGAGATGTTTGTTTTCAAGGGCCGTTGGTTCTGGCGGGTGCGTAGGAACAGGGTTCTGGATAACTACCCCATGCCCATCGGTCACTTCTGGAGGGGTCTGCCTGGAGACATAGACGCCGCCTATGAGAGACACGACGGCAGGTTCGTCTTCTTTAAAGgtAACAGATTCTGGCTTTTCAGGGAGGCTAACCTGGAACAGGGCTATCCATTGGAGCTGGTTGATTATGGTCAAGATATTCCCTACGACCGAATAGACACAGCCATCTGGTGGGAGCCATCCGGCTTCACTTACTTCTTTCAAGGAGACAGGTACTGGCGCTTCAACGAGCAGTCACGCTTGGCTGATCGGGGCTACCCGAAACCAATCAGCGTCTGGGGAGCATCAGTGCCCTCCTCTCCCAAGGGGGCCTTCCTCAGCGATGATGGAGCCTACACCTTCTTCTACAAGGGTTCCAAGTACTGGAAGTTTGACAACCACCGCATGAAGAGCGAGCCAGGCTACCCCAAGTCCATCCTGAGAGACTTCATGGGCTGCAGCGTGGACCTGGACCCAGACAGAGACACGGACACAGACGCCGGGCGCAAATACCCAGACGTGAACCGCCCGCCGTTCAACCCGGACGCAGACGGACGCGACGGCGACAAGGGCAAAGACCGAGAGGGGACGGACGGCGGCGGGACGGACAAAGACACGGGCAAAGGGTCGGACGCCGACGGCGACAAAGACGAAGACGACCGCGAGGGACGCGAGGAGGACACCAACGAGGTGGACGTGGTGCTGAAGGTGGACGACAGCGAGGAGCGGACCATGAACATCCTGATGGTGACCATCCCGCTGGTCCTGGTGCTGTGCATCCTGGGGCTGATCTACGCCATCATCAACACGCTGCAGAGCAAAGGGGCGCCGCGGCTGCTGGTGCACTGCAAGCGCTCGCTGCAGGACTGGGTCTGACCCCTGACGTTAAGGGACACTGAACTATATGAACCTAAAGTTGGACCTTAGACACCGCCCTCCTCTAATCCAAGCCTCTTCCCAGCGACCCATCTGTCTACAGTCTCTGTGCTCAGTGGCTCCCGCAAACTTGTGGTAGTAGATCCAATATcgtactgacacacacacacacacacacacacacacacatacactagaAGCAAGCATAGATTATGTCTTACTTATACATACCCCTACACACACCACCCTAACCTCCTCCTGTCTCCCATGGTGCTCTACAATGCGTTGACTGTAGTCTATTTATATGAGAGAAGTTtgcacattgtttttttttcttcatgttttgGTTCATTTTGTGTGACtttatgttgttgttattattatttctgaaCCAGGAAGAGCGTTCTATTCTCTCTCCCATCTCTGCACCGCCTTCCTCCTTCCCCTGATCTCTGTAGGGGCTTTGTCctcgccgccgccgccgccgccgacTCCACATCTGCTTACATTATCACAGTTGCcgcaaaagaaagaaatgcaaaGGGTTCGAAACGAGAAAGCCATTTGTAGACGGACCACTACGCTTCAAGCGGGGCTCGGTAGCGTTCCTTCCCCCTTTCACCATCGTCGTCTTCTCCTTCGTCTTGCTCCATCTCTTCCCTTTGCTCTGCAGTACAGTGTGTCACACGGTGGGAGGTGAGCGAGAGAGAAACAGGGTTAAGTTACAACAGATATTTCGTGGCAGTTTACATTCAGAGGTATTTTGAGGCATTGAGCCTGGATATTATCCTCCCTTTGACTCCCTCTGACAGAGACTGGGCTGGGGGTGTAACTCTGAAGGTTGGAGCAGAATTTAGTATGTCATCATACAGGCACCACTTTGGTTTTAAAGGATAATTATAGTTTATTACGACTTCAATCTTATTTTGAATGGTAATTTCAACAGTAACAATAACACTGGACTCATCAAGTGaattgctgagatctgggaattaaattaaaataaatttaagctctagtgtcaaatcataacaggggttatctcaggacactttacagatagagaagGTCTAGGCCaaactctataatttacagagacctgACAAAATATGAAGACAGACGGTAAAATGATTACCACAGACCGTCTGTTGTAAACATTCAAGTTCACATACCACCTTCCTGGTTCTACTTTGACCTACCACACTTGCCGTAGTTGTGTGCAGTCTTTAAAACAAGtacaatgttataataataGATATAAATTGTCCCAAGTTGTAATAAATAGTAATTATCCTTTAAA

Function

symbol description
mmp15 Predicted to enable metalloendopeptidase activity. Involved in endodermal cell differentiation. Predicted to be located in plasma membrane. Biomarker of prostate cancer and transitional cell carcinoma.

NR:

description
matrix metalloproteinase-15-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K07995 MMP15; matrix metalloproteinase-15 (membrane-inserted)

RNA

RNA id representative length rna type GC content exon number start site end site
TU34089 False 1635 lncRNA 0.44 2 3481321 3484224
XM_039794972.1 True 4221 mRNA 0.51 10 3481297 3518086

Neighbor

gene id symbol gene type direction distance location
LOC120555909 NA coding upstream 58891 3421203 ~ 3422406 (+)
slc7a6 slc7a6,LOC104919890,LOC103355407,LOC102782072 coding upstream 175809 3280076 ~ 3305488 (+)
adgrg1 NA coding upstream 208119 3250608 ~ 3273178 (+)
LOC120555875 LOC103368003,LOC100711702 coding upstream 245278 3223869 ~ 3236019 (+)
phkb phkb coding upstream 1298543 2039463 ~ 2182754 (+)
mtss1lb LOC102779958,LOC108237900,LOC103462242,LOC103355402 coding downstream 105548 3623634 ~ 3724143 (+)
LOC120556182 LOC101467318,LOC102294465,LOC102206054,LOC108237897 coding downstream 354946 3873032 ~ 4152064 (+)
LOC120555911 LOC102783822,LOC103462246,LOC106925612,LOC102294465 coding downstream 645590 4163676 ~ 4254074 (+)
LOC120555425 NA coding downstream 814979 4333065 ~ 4341288 (+)
zgc:162297 LOC103355515 coding downstream 2124197 5642283 ~ 5654255 (+)
G25380 NA non-coding upstream 17774 3463057 ~ 3463523 (+)
G25316 NA non-coding upstream 46064 3361143 ~ 3435233 (+)
LOC120555487 NA non-coding upstream 66762 3413012 ~ 3414535 (+)
LOC120555486 NA non-coding upstream 91572 3388522 ~ 3389725 (+)
LOC120555485 NA non-coding upstream 92784 3382656 ~ 3388513 (+)
G25418 NA non-coding downstream 96160 3614246 ~ 3614516 (+)
G25436 NA non-coding downstream 297751 3815837 ~ 3816148 (+)
G25486 NA non-coding downstream 827552 4345638 ~ 4348769 (+)
G25498 NA non-coding downstream 928509 4446595 ~ 4446914 (+)
G25541 NA non-coding downstream 1164038 4682124 ~ 4682470 (+)
adamts18 adamts18 other upstream 1169140 2240414 ~ 2312157 (+)
G25204 NA other upstream 1397978 2081958 ~ 2083319 (+)
G25173 dnaja2,LOC106524269 other upstream 1638486 1839333 ~ 1842811 (+)
mapk8ip1b mapk8ip1,LOC102793463 other upstream 3396871 11843 ~ 84426 (+)
G25431 NA other downstream 266847 3784933 ~ 3785542 (+)
G25512 NA other downstream 1052287 4570373 ~ 4575645 (+)
tshz3b tshz3 other downstream 1275729 4793815 ~ 4837285 (+)
G25708 NA other downstream 2516123 6034209 ~ 6035193 (+)
LOC120555541 NA other downstream 2744324 6262410 ~ 6289776 (+)

Expression


Co-expression Network