G25486


Basic Information

Item Value
gene id G25486
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 4345638 ~ 4348769 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU34212
TCTAAACTTTCAGAGGCATCCTATCATCTCACAAACGTGACCAGAGACAAAAAGCACTCACTTTATTTCTCAGTCTTTATTACCAAAAATACAATAGCAAAGTAGTGACATAATACTGCCTATGAtgttctaaaaaataaataaacatgaagCAAGAGTCACACTGCTCTCTCAAACAATTCCACGTTGAACCTTATTACAAAATTGGATATGAGCAAAAGAAATCTGCTGGTCAGGACAGACGTGTTCTATATCTTCTCCAACTCCTTTGGTTTAAATGCGTGCAGCTCGTTTGTGCCGTTTTTAGCTTAAAAACAGACGTTCCCTCAAGTAGACTGGGAGTCAATAAGAAACTGAGCCAAAAGTCAATCTAaaacttgattttttttctcgatataattcaaaaataaatgttatcttTTAGAAAAGTCACTTTTAAGGTTCTGCAGTATTCACCTACGACATATACACACTTGCAGTAGGAAAGCGTTTGAGCTAATTACTAGGTCAAATAGCTTGTAATTTCAAAACTGCGTTTCACATGCATGGTTTATTGTCGTTTCTGTGTCCCCAAAACCGCTGAATATAATGAAAATGTGGATTTGCCTTTATGGAAAACATACAGAGGTGTGATAATACCCAGCATTGTCTCAATAGTCAACTTGAATACCACTGGCTGACTATTTTGTGCCCAAATCAAAATATGGATCAATTGCTCGAACATTTTGAACATGTGCGACTGAAGTTTTGGCAGAGAGGTCAACATTCTAGTTTCGACACAAATGATACCTTGAAACAAAAGGCCCGATAaactaagacaaaatacaaTTCTTCGCTCTCAAACAAGCGTATATGGCACCAAATGATAGTTCTGTAGTTGTGGTGTAAATGAAAAACGACTGAGGGGAAATGTAACTGTAGGGAACGCTCTGAAATTGATAAAAAGCCCTTGCTTTTCATACTCGCAGTGTGTGCTGCCTTGACATTCGTTTGCAATTTGTGACACCAAATGGAAAAATAGCCCTGCATGCAAAATCCCACTTGACCTACATATATGGATGTAGCCAAAAGGGGAATGACCCAAGATGCCAGCTGTTAGCTCAACTTTACATTGATTCCAACACAATTTGATTGaaagcattttctttttcactagaaaaaaatatctggaatgattttttttttcttcctttgaaATATTATCATTAGCTACTTTGTAATCACAACGCAGTATAACAGGCCATGGGCCATGGCTTCTTGTTACATTTGTTGCTACGGATGCCGGTTCTGCAAATTCGATACCAGTTCTTTTTTCAAAACCAATTCCAATAAAattaaatccattttaacaagaaGTTACAACATTACGGAACAATGTTTTAGCTCCTTTACACCTACGTATGAGATGCCACTGCAGTCCAGCCtctcaaaacaaaacacacaaggcCCGTAACgtggagtttttcctgcgtgcctctacgacgtgtaacgttagacagccaatcagcagcatgattagatcttggtagaagcatgctgcatgctcattggctcactgacactgatgagatttactaaGGCATTGAAATTTGGTGTTGAATGACAAGACATTTTTCGAAACTTGACAATAAGGAGCCTGAAAATCAAAGTTGGGTACCAAGCCCTAGCAGTCACTTTgaacagtttgtgaacagtgttttctgttggagatggtaagtccctttggggtggactttgggctttttcactttgtaaacctataacgtgcacaaaaaagatatataacacaataaaggtaagggggaaaaagccaaaaagcataatatgagcactttaattctCACTGCTCATTTACATGCATGCCAGGTTAATGAGATGGGAGGAGCACTGAAGTCCCacttttagttttaatttagACATGTCACCATCTTCCTTATTCCTGCCACGTAGAACTGTAAATCAAAAGCCAGACAATAATTACCTGCTATGATAATGAGAATCCCAGGCCACGTAACAGATCATTGAGATAgagatttcattttattttatctgcTATGCCACACAGATGTGCAGACACAATTTGAAGCGGTTACGTCAGGCTGAGAAGGTGGGCATGAATTGATGGATATTCCATTTGATCTTAATTTCCTCAGCTGCTGTCTATGTAAACGACATACTGATGACCGCATGACGGGACGGCATGATACATTAGATCATTAGAGAGGAGTGTTAAGAATAATACTTATCTTGAatatattttcaatgttttgatgCCATGTTGATTTTCAGGCCAGATTGTAACAGGAACGTCCTCCTGTCACAGCAATTATGTCCCGACaagtctggcattgccagaccttcctccacggcgctgccgaggagggtctggctagtccacacagcattctgggatgggagaacaacgtgctctggtttattggcatttctttaaaccaatcacaatagtcttgggcggcgctaacactggatggagccacggtgtcgctgcaaaacagcctcgtcTTAACGGCATAGTTGGACGTGAATCATCATGAAAGTGTGAGACGTATTTCGGTTGTTTCTAACATGCATCTGGGTCACAAGATGGTTAGCCAGTACTCCTTTTCTCTTACATTCAACCAAGTGTTTTCTGAACAGTCTGCATCATTTGAGATactaaaggacaaatccggcacaAAAtcaacctaggggttaataacacatgggtaccgagtcgaccgttctctgggaaatgttttcatgctaatcgaatgtgaccagtttcagcgcaaaccgctaattagcttataacgctagtcatcAGGGCAccggtaaagtaaaaagaaatcgctatttctataccactaacaacgCTCAAAAcatcaccacacttccacggtagcataatgagggacCCTGCATggaaaccgaagcattgagaactttgtaagcgtacagacagtttattaaagagatagtttataaagaccgTACTGTTcatgtatacaggcaggcgccatcttgggaaaacagtcacgaccagttgAACGAtgaacgccgtgcttgagctaggTTACTTATTACAcggcgttcgactggtcatgactgttttcccaagatggcgcccgcctg
>TU34213
ACTGCCTATGAtgttctaaaaaataaataaacatgaagCAAGAGTCACACTGCTCTCTCAAACAATTCCACGTTGAACCTTATTACAAAATTGGATATGAGCAAAAGAAATCTGCTGGTCAGGACAGACGTGTTCTATATCTTCTCCAACTCCTTTGGTTTAAATGCGTGCAGCTCGTTTGTGCCGTTTTTAGCTTAAAAACAGACGTTCCCTCAAGTAGACTGGGAGTCAATAAGAAACTGAGCCAAAAGTCAATCTAaaacttgattttttttctcgatataattcaaaaataaatgttatcttTTAGAAAAGTCACTTTTAAGGTTCTGCAGTATTCACCTACGACATATACACACTTGCAGTAGGAAAGCGTTTGAGCTAATTACTAGGTCAAATAGCTTGTAATTTCAAAACTGCGTTTCACATGCATGGTTTATTGTCGTTTCTGTGTCCCCAAAACCGCTGAATATAATGAAAATGTGGATTTGCCTTTATGGAAAACATACAGAGGTGTGATAATACCCAGCATTGTCTCAATAGTCAACTTGAATACCACTGGCTGACTATTTTGTGCCCAAATCAAAATATGGATCAATTGCTCGAACATTTTGAACATGTGCGACTGAAGTTTTGGCAGAGAGGTCAACATTCTAGTTTCGACACAAATGATACCTTGAAACAAAAGGCCCGATAaactaagacaaaatacaaTTCTTCGCTCTCAAACAAGCGTATATGGCACCAAATGATAGTTCTGTAGTTGTGGTGTAAATGAAAAACGACTGAGGGGAAATGTAACTGTAGGGAACGCTCTGAAATTGATAAAAAGCCCTTGCTTTTCATACTCGCAGTGTGTGCTGCCTTGACATTCGTTTGCAATTTGTGACACCAAATGGAAAAATAGCCCTGCATGCAAAATCCCACTTGACCTACATATATGGATGTAGCCAAAAGGGGAATGACCCAAGATGCCAGCTGTTAGCTCAACTTTACATTGATTCCAACACAATTTGATTGaaagcattttctttttcactagaaaaaaatatctggaatgattttttttttcttcctttgaaATATTATCATTAGCTACTTTGTAATCACAACGCAGTATAACAGGCCATGGGCCATGGCTTCTTGTTACATTTGTTGCTACGGATGCCGGTTCTGCAAATTCGATACCAGTTCTTTTTTCAAAACCAATTCCAATAAAattaaatccattttaacaagaaGTTACAACATTACGGAACAATGTTTTAGCTCCTTTACACCTACGTATGAGATGCCACTGCAGTCCAGCCtctcaaaacaaaacacacaaggcCCGTAACgtggagtttttcctgcgtgcctctacgacgtgtaacgttagacagccaatcagcagcatgattagatcttggtagaagcatgctgcatgctcattggctcactgacactgatgagatttactaaGGCATTGAAATTTGGTGTTGAATGACAAGACATTTTTCGAAACTTGACAATAAGGAGCCTGAAAATCAAAGTTGGGTACCAAGCCCTAGCAGTCACTTTgaacagtttgtgaacagtgttttctgttggagatggtaagtccctttggggtggactttgggctttttcactttgtaaacctataacgtgcacaaaaaagatatataacacaataaaggtaagggggaaaaagccaaaaagcataatatgagcactttaattctCACTGCTCATTTACATGCATGCCAGGTTAATGAGATGGGAGGAGCACTGAAGTCCCacttttagttttaatttagACATGTCACCATCTTCCTTATTCCTGCCACGTAGAACTGTAAATCAAAAGCCAGACAATAATTACCTGCTATGATAATGAGAATCCCAGGCCACGTAACAGATCATTGAGATAgagatttcattttattttatctgcTATGCCACACAGATGTGCAGACACAATTTGAAGCGGTTACGTCAGGCTGAGAAGGTGGGCATGAATTGATGGATATTCCATTTGATCTTAATTTCCTCAGCTGCTGTCTATGTAAACGACATACTGATGACCGCATGACGGGACGGCATGATACATTAGATCATTAGAGAGGAGTGTTAAGAATAATACTTATCTTGAatatattttcaatgttttgatgCCATGTTGATTTTCAGGCCAGATTGTAACAGGAACGTCCTCCTGTCACAGCAATTATGTCCCGACaagtctggcattgccagaccttcctccacggcgctgccgaggagggtctggctagtccacacagcattctgggatgggagaacaacgtgctctggtttattggcatttctttaaaccaatcacaatagtcttgggcggcgctaacactggatggagccacggtgtcgctgcaaaacagcctcgtcTTAACGGCATAGTTGGACGTGAATCATCATGAAAGTGTGAGACGTATTTCGGTTGTTTCTAACATGCATCTGGGTCACAAGATGGTTAGCCAGTACTCCTTTTCTCTTACATTCAACCAAGTGTTTTCTGAACAGTCTGCATCATTTGAGATactaaaggacaaatccggcacaAAAtcaacctaggggttaataacacatgggtaccgagtcgaccgttctctgggaaatgttttcatgctaatcgaatgtgaccagtttcagcgcaaaccgctaattagcttataacgctagtcatcAGGGCAccggtaaagtaaaaagaaatcgctatttctataccactaacaacgCTCAAAAcatcaccacacttccacggtagcataatgagggacCCTGCATggaaaccgaagcattgagaactttgtaagcgtacagacagtttattaaagagatagtttataaagaccgTACTGTTcatgtatacaggcaggcgccatcttgggaaaacagtcacgaccagttgAACGAtgaacgccgtgcttgagctaggTTACTTATTACAcggcgttcgactggtcatgactgttttcccaagatggcgcccgcctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34212 True 3132 lncRNA 0.40 1 4345638 4348769
TU34213 False 3018 lncRNA 0.41 1 4345752 4348769

Neighbor

gene id symbol gene type direction distance location
LOC120555425 NA coding upstream 4350 4333065 ~ 4341288 (+)
LOC120555911 LOC102783822,LOC103462246,LOC106925612,LOC102294465 coding upstream 91564 4163676 ~ 4254074 (+)
LOC120556182 LOC101467318,LOC102294465,LOC102206054,LOC108237897 coding upstream 193574 3873032 ~ 4152064 (+)
mtss1lb LOC102779958,LOC108237900,LOC103462242,LOC103355402 coding upstream 621495 3623634 ~ 3724143 (+)
LOC120555909 NA coding upstream 923232 3421203 ~ 3422406 (+)
zgc:162297 LOC103355515 coding downstream 1293514 5642283 ~ 5654255 (+)
LOC120555666 LOC104921432,LOC104957830,LOC107086796,LOC103149206,LOC102794467,LOC102201791,LOC101480916,LOC102288651 coding downstream 1310711 5659480 ~ 5672023 (+)
LOC120556426 LOC102314239,LOC100696141,LOC102210596,LOC101484460,LOC106959120,LOC106925763,LOC103462259 coding downstream 1384521 5733290 ~ 5758249 (+)
LOC120556427 cd81,LOC103358449,LOC103379030 coding downstream 1415774 5764543 ~ 5804822 (+)
LOC120555999 NA coding downstream 1467265 5816034 ~ 5854489 (+)
G25436 NA non-coding upstream 529490 3815837 ~ 3816148 (+)
G25418 NA non-coding upstream 731122 3614246 ~ 3614516 (+)
G25380 NA non-coding upstream 882115 3463057 ~ 3463523 (+)
LOC120555487 NA non-coding upstream 931103 3413012 ~ 3414535 (+)
LOC120555486 NA non-coding upstream 955913 3388522 ~ 3389725 (+)
G25498 NA non-coding downstream 97826 4446595 ~ 4446914 (+)
G25541 NA non-coding downstream 333355 4682124 ~ 4682470 (+)
G25567 NA non-coding downstream 541958 4890727 ~ 4890996 (+)
G25593 NA non-coding downstream 1281895 5630664 ~ 5633030 (+)
G25611 NA non-coding downstream 1325597 5674366 ~ 5675988 (+)
G25431 NA other upstream 560096 3784933 ~ 3785542 (+)
mmp15b mmp15,LOC104948393 other upstream 827552 3481297 ~ 3518086 (+)
adamts18 adamts18 other upstream 2033481 2240414 ~ 2312157 (+)
G25204 NA other upstream 2262319 2081958 ~ 2083319 (+)
G25173 dnaja2,LOC106524269 other upstream 2502827 1839333 ~ 1842811 (+)
G25512 NA other downstream 221604 4570373 ~ 4575645 (+)
tshz3b tshz3 other downstream 445046 4793815 ~ 4837285 (+)
G25708 NA other downstream 1685440 6034209 ~ 6035193 (+)
LOC120555541 NA other downstream 1913641 6262410 ~ 6289776 (+)
G25743 NA other downstream 1938279 6287048 ~ 6288077 (+)

Expression


Co-expression Network