LOC120555407


Basic Information

Item Value
gene id LOC120555407
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 4575293 ~ 4575880 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU34247
cagtgtctgtctccctgtcccaGCCTGTTTTCCTGTTCCCctttcccttgtgtgtgtgtgtgtgttgtctgtgtctgtctacaTGTCACTCAAGAGGATCTAGGTCAAGGGGTGTGGCCATTCTCACCTGCTCTGCTCCAGCCAGCTGCAGATCATTCCAGTAATCAACCAACACCCAGCTGCAGCTCATTCCAGTACTCAACCAACAGTTATCTACCCGGGCTGTTCACCTCTTCAGCGCCAGTTCGTTGCAACCATTCCTGTGTTCCCACCTCTGGACCTGCTGCTTCTCGGTTCTCATCTGCCTCCTCGCTGCCTGCTCACCTCGCAACTCCGTTCTCAACCAGCCTTCCACCCAGCTCTCGTCTTCGCTGCCTGGCCACACACCCGCCGTCGGATCTCCAGCTTCGACTCCACCTGGAGCTGCTCTCCTGGCCATTCCCTCCTGC
>XR_005638706.1
ctgtctccctgtcccaGCCTGTTTTCCTGTTCCCctttcccttgtgtgtgtgtgtgtgttgtctgtgtctgtctacaTGTCACTCAAGAGGATCTAGGTCAAGGGGTGTGGCCATTCTCACCTGCTCTGCTCCAGCCAGCTGCAGATCATTCCAGTAATCAACCAACACCCAGCTGCAGCTCATTCCAGTACTCAACCAACAGTTATCTACCCGGGCTGTTCACCTCTTCAGCGCCAGTTCGTTGCAACCATTCCTGTGTTCCCACCTCTGGACCTGCTGCTTCTCGGTTCTCATCTGCCTCCTCGCTGCCTGCTCACCTCGCAACTCCGTTCTCAACCAGCCTTCCACCCAGCTCTCGTCTTCGCTGCCTGGCCACACACCCGCCGTCGGATCTCCAGCTTCGACTCCACCTGGAGCTGCTCTCCTGGCCATTCCCTCCTGCACTATCCACATTGTGTCCAATAAAACACTGCTAACTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34247 False 449 lncRNA 0.57 2 4575332 4575880
XR_005638706.1 True 482 lncRNA 0.55 2 4575293 4575874

Neighbor

gene id symbol gene type direction distance location
znf507 NA coding downstream 199995 4351498 ~ 4375298 (-)
dpy19l3 dpy19l3 coding downstream 241773 4265244 ~ 4333520 (-)
dhcr7 dhcr7 coding downstream 973860 3590280 ~ 3601433 (-)
LOC120555474 NA coding downstream 1099401 3459107 ~ 3475892 (-)
LOC120555910 NA coding downstream 1116560 3433759 ~ 3458733 (-)
znf536 znf536,LOC102211462 coding upstream 482654 5058534 ~ 5344208 (-)
ccne1 ccne1 coding upstream 1054742 5630622 ~ 5643404 (-)
si:ch211-260e23.9 LOC104921431 coding upstream 1077574 5653454 ~ 5663254 (-)
LOC120555531 LOC106909328 coding upstream 1462545 6038425 ~ 6050689 (-)
LOC120555530 NA coding upstream 1484738 6060618 ~ 6067226 (-)
LOC120555406 NA non-coding downstream 4173 4570370 ~ 4571120 (-)
G25496 NA non-coding downstream 226954 4345803 ~ 4348339 (-)
G25485 NA non-coding downstream 231755 4343329 ~ 4343538 (-)
G25484 NA non-coding downstream 233011 4342011 ~ 4342282 (-)
G25464 NA non-coding downstream 313823 4247590 ~ 4261470 (-)
LOC120556382 NA non-coding upstream 82669 4658549 ~ 4666231 (-)
G25542 NA non-coding upstream 106301 4682181 ~ 4682584 (-)
G25544 NA non-coding upstream 131531 4707411 ~ 4707701 (-)
G25566 NA non-coding upstream 260753 4836633 ~ 4837272 (-)
LOC120556144 NA non-coding upstream 347626 4923506 ~ 4925008 (-)
G25228 NA other downstream 2298202 2275475 ~ 2277091 (-)
cep89 NA other downstream 2834454 1664770 ~ 1740839 (-)
LOC120556047 abcc12,LOC102304683,LOC101479372,LOC102203605 other downstream 2932945 1587544 ~ 1642348 (-)
LOC120556048 abcc12,LOC101479372,LOC101076737,LOC102203605,LOC100701509,LOC102304683 other downstream 3019647 1510165 ~ 1555646 (-)
LOC120555898 mctp2 other downstream 3118185 1410674 ~ 1457108 (-)
LOC120556425 ap2a2,LOC104921433,LOC104965011 other upstream 1104162 5680042 ~ 5717433 (-)
LOC120555534 LOC103369663 other upstream 1580342 6156222 ~ 6167529 (-)
ankdd1a ankdd1a other upstream 1747397 6323277 ~ 6346561 (-)
pop4 pop4,LOC105418436,LOC104960843 other upstream 1933379 6509259 ~ 6524355 (-)
tpcn2 tpcn2 other upstream 1958162 6534042 ~ 6590639 (-)

Expression


Co-expression Network