LOC120555541


Basic Information

Item Value
gene id LOC120555541
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6262410 ~ 6289776 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU34538
GGTGGGAAGCAGGTGGTGTCTCTGGCCCGGAGGGGATGCCTTTACCATGGCACGGTGCAGCACGAGCTGCTCCACGCTCTGGGCTTCAACCATGAACAGACCCGCTCTGACAGGGACAACCACATCAAAGTCCTGCTGCAAAACGTTCAGTCTGgaATGCAGCACAACTTCAATAAGATTGCCACCCTGAACCAGGGCACTCCCTACGATTACAACTCTGTCATGCAGTACCACAAGTATGCCTTCTCCAAGAACAACCAGCCCACCATGGTCCCCATCCCCAACGCCAACGTGTCCTTTGGCAACGCCAAGGAGATGAGTCGCAACGACAAAGCCAGGCTCAACACTCTCTACAAGTGCTAAGAAGCGTTTTCAGATGTGCTGACAGACGATCAGAGGCTCCCTGACCAACAGAAGATGCAGCCCTGAACTCATCAGCACAACAGCCAATGATC
>TU34539
GAGCTCAGAGTGTTTcaggcagaggagctgcagtaatgGGCAGTCTGAGaaacattatgtttttatacatCAAAGCATATAAACCTATTCCAGTAGACACCGAGAatacaaatatgatgctgaaacACTAAATGTTATGTGCTATGGGATGGTAATAAGCTAAATGTTGTGTGTTGTCGGATGGTAAGAAGCTAAATGTTGTGTGCTATGGGATGGTAAGAAGCTAAATGTTGTGTGCTATGGGATGTTAAAAAGCTAAATGCTGTGTCCTATGGGATGATAAGCATAGATATTAAGAAGCTAAAAGCTGTGTGCTGTGGTCCTGGCAGCCGACCGGGAGAAGGCTATCATCACCCGTGGACTGGAgtccttctcttccttctcctgCATCTTCTTCAGGCCCACCCAAAGCGGCGACCACGAATGGCTGAGCATTGAGTCCAATAATGGCTGCTCCTCCTTCGTTGGCCGTCGTGGTGGGAAGCAGGTGGTGTCTCTGGCACGGAGTGGATGCCTTTACCATGGCACGGTGCAGCACGAGCTGCTCCACGCTCTGGGCTTCAACCATGAACATTCCCGCTCTGACAGGGACAACCACATCAGGGTTATGCTGCAAAACGTTCAATCTGGAAAGGAGCACAACTTTAGAAAGGTCGCCACCCTGAACCAGGGCACTCCCTACGATTACAACTCTGTCATGCAGTACCGCAAGAACGCCTTCTCCAAGAACAACCAGCCCACCATGGTCCCCATCCCCGACCCCAACGTGTCCTTTGGCAACGCCAAGGAGATGAGTCACAACGACAAAGTCAGGCTCAACACTCTCTACAAGTGCTAAGAAGCGTTTTCAGATGTGCTGACGATCAGAGGCTCCCTGACCAACAGAAGCTGCAGCTCTGAACTCATCAGCACAACAGCCAATGATCATTCTATAAAGTTTTTTTCATTGCA
>TU34541
AAACCATCAGTACCAAACCACGGAGCTCTGCAGATTATTGAGATCTTTCTCCAGCGGCTGGACTCCTTTCTGTCCAGAGTCAATGTGAAGACAAACcaaacaaatgtaactttaaacttaactttacttgtttttgtttgttttaaggaATGCAGCACAACTTCAATAAGATTGCCACCCTGAACCAGGGCACTCCCTACGATTACAACTCTGTCATGCAGTACCACAAGTATGCCTTCTCCAAGAACAACCAGCCCACCATGGTCCCCATCCCCAACGCCAACGTGTCCTTTGGCAACGCCAAGGAGATGAGTCGCAACGACAAAGCCAGGCTCAACACTCTCTACAAGTGCTAAGAAGCGTTTTCAGATGTGCTGACAGACGATCAGAGGCTCCCTGACCAACAGAAGATGCAGCCCTGAACTCATCAGCACAACAGCCAATGATC
>XM_039794284.1
ATGGCTCGCATGTCTGTTTTCAGATTCTCAGCTctggctctgctgctgctgtctgccTGCTGTTGGGCCGACAATGAGGCAGAGGATGACTCAGCGGAGCTTTCTGTctctgaacttctggagagagccAACAGTAATCTGATCCGTTCTGACAATGATCCCATCCTGACTGAAGGAGACATCGCTATCGGCAGCGAGGACGAGAGAAACGCCAACCCCTGCACCAGCCAAGACTGCAAGTGGTTAAAAAATGCTGACGGGAAGGTCTACGTTCCTTATTACATCGCCAACCACTACTCCGACCGGGAGAAGGCTATCATCACCCGTGGACTGGAgtccttctcttccttctcctgCATCTTCTTCAGGCCCACCCAAAGCGGCGACCACGAATGGCTGAGCATTGAGTCCAATAATGGCTGCTCCTCCTTCGTTGGCCGTCGTGGTGGGAAGCAGGTGGTGTCTCTGGCACGGAGTGGATGCCTTTACCATGGCACGGTGCAGCACGAGCTGCTCCACGCTCTGGGCTTCAACCATGAACATTCCCGCTCTGACAGGGACAACCACATCAGGGTTATGCTGCAAAACGTTCAATCTGGAAAGGAGCACAACTTTAGAAAGGTCGCCACCCTGAACCAGGGCACTCCCTACGATTACAACTCTGTCATGCAGTACCGCAAGAACGCCTTCTCCAAGAACAACCAGCCCACCATGGTCCCCATCCCCGACCCCAACGTGTCCTTTGGCAACGCCAAGGAGATGAGTCACAACGACAAAGTCAGGCTCAACACTCTCTACAAGTGCTAAGAAGCGTTTTCAGATGTGCTGACGATCAGAGGCTCCCTGACCAACAGAAGCTGCAGCTCTGAACTCATCAGCACAACAGCCAATGATCATTCTATAAAGTTTTTTTCATTGCA

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair

RNA

RNA id representative length rna type GC content exon number start site end site
TU34538 False 455 TUCP 0.54 4 6288190 6289776
TU34539 True 951 TUCP 0.49 5 6264974 6266708
TU34541 False 448 TUCP 0.47 3 6289056 6289776
XM_039794284.1 False 920 mRNA 0.53 8 6262410 6266708

Neighbor

gene id symbol gene type direction distance location
trnal-uaa_1 NA coding upstream 209513 6052815 ~ 6052897 (+)
trnal-uaa NA coding upstream 210441 6051887 ~ 6051969 (+)
fadd NA coding upstream 230256 6026435 ~ 6032154 (+)
ano1a ano1 coding upstream 240990 5917556 ~ 6021420 (+)
zgc:153993 NA coding upstream 378387 5869055 ~ 5884023 (+)
mtch2 mtch2 coding downstream 5321 6295097 ~ 6311140 (+)
LOC120555501 NA coding downstream 204161 6493937 ~ 6495721 (+)
bnc1 bnc1 coding downstream 896953 7186729 ~ 7211577 (+)
sh3gl3a LOC100692766,LOC101467334,LOC103355412,LOC102293456 coding downstream 942772 7232548 ~ 7290870 (+)
LOC120555848 LOC107591295,LOC105891088 coding downstream 1028133 7317909 ~ 7330702 (+)
G25710 NA non-coding upstream 224441 6036859 ~ 6037969 (+)
G25709 NA non-coding upstream 226621 6035456 ~ 6035789 (+)
G25675 NA non-coding upstream 349957 5911229 ~ 5912453 (+)
G25673 NA non-coding upstream 369385 5892721 ~ 5893025 (+)
G25663 NA non-coding upstream 399543 5862659 ~ 5862867 (+)
G25797 NA non-coding downstream 138282 6428058 ~ 6428260 (+)
G25824 NA non-coding downstream 239742 6529518 ~ 6532184 (+)
G25827 NA non-coding downstream 300419 6590195 ~ 6590618 (+)
G25850 NA non-coding downstream 351674 6641450 ~ 6641983 (+)
G25888 NA non-coding downstream 684559 6974335 ~ 6979755 (+)
G25708 NA other upstream 227217 6034209 ~ 6035193 (+)
tshz3b tshz3 other upstream 1425125 4793815 ~ 4837285 (+)
G25512 NA other upstream 1686765 4570373 ~ 4575645 (+)
G25431 NA other upstream 2476868 3784933 ~ 3785542 (+)
mmp15b mmp15,LOC104948393 other upstream 2744324 3481297 ~ 3518086 (+)
rwdd3 rwdd3 other downstream 92794 6382570 ~ 6395706 (+)
LOC120556365 LOC102793592,LOC103366350,LOC101487888,LOC102307622,LOC100694289 other downstream 704180 6993956 ~ 7005678 (+)
G26205 NA other downstream 2463925 8753701 ~ 8760301 (+)
G26236 NA other downstream 2778953 9068729 ~ 9155343 (+)
cers3a cers3,LOC102798777 other downstream 3043453 9333229 ~ 9378611 (+)

Expression


Co-expression Network