rwdd3 (rwdd3)


Basic Information

Item Value
gene id rwdd3
gene name rwdd3
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6382570 ~ 6395706 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU34614
TTTTTTTTGGTCTGTGTTTTAAAAACCAGCAGCGTGTGGAGTTGACGGAGAAGTTCAGAGGGGGTGAGGAGGAGGTGAAAGagcgagagggagaggaggagtggACGGCAGTGCTGTCGTTAGACCACATCCGATCCCGGAGTCGTTACATCGGTCTGCTGGAGCGCTGGAGCCGGACGCTGCAGCTCACTGGGAGCTTACTACTGGGACAGAGTATACTGGTGGTTCTGCAGGGAGCCAGACCCAATATCAAGGAGTTCTGTCGCCTTTTGAAGACTGTGAAGGTGGATGTGGATTCTTCAGGCAAGAAATGCAAAGAGAGGATGATGAGGGTTCTCATTGAAAGCCCTTTGTCTTCCTCCTGCGGAAATGGTCTCCAGGGTTTCGTAGTGAAGAACTACGAGTCGTTGCCAGAGCTGGCCGCAGCCTTCCAGGAGATCAACATGACCGAGCTCTACCAGCAGATCCTGCCATCATTAAGGGACTGACAGCACACAGGGTACCATGGTGACCATGGTGACTTGACCTGAACTGAGACAAGATTCAAGGAAGTAGGAACAGGTGCACACAGGAAGAGCTGGCTCCGTTGTGtcaaaatgtgataaaatctggtttataattatattattatattaaggtccagtgtgtaacgtgtttcataatcaaaatctgtgttgcccgttcacaaacttgtcctttttcatgaatatttaccaccaccatcaattccaagtattccttttggcttgaaatttttacatttgcattcgcatgaacttgggtagacgctccatattcatgcgccatcttgaaatacgttagccggtaagggacatacaggacatactgttCCGCCCTActgttttcgctgtcacatgataaactcacaggtgctgccaatgctgctaatgggtatcgtagcttcccggccccggcaagttagAAGAAGGAAacctggaggaccacacgtattcaaaatccaaatttcaggaacaggagtcttcttcttcgcccagaaaaagaaaaagaatattgaaaagagcaagagaccggcgttTTGAAACgcgaaggctaccgtagctgtaatacgtactttgaactgcgtggtgcgagagagttgattgcgatatatatgatctcaacgctagatgggagaaattcctacacattggacctttttttAAGGGCAAATATAATGTTGTGAGTCTTTGTGGTATAGACAGGTGACGGTTATGTCTGCCTAAAGAGAAGTCCCAGACTCCCCCTCCTAGTGCCACTCTTAGTCGCTGCTGCACAGCTCCAGAGGCAGAGACTGACACAGAGCCAAGGCCTCAAGCGCTGGCACTAGAGATGCGAACTCGGCTAAAAACGAGCAAAAATCATCAATATAACTCAACCAGAAAGACCGTCCTAAAAAGCCGGTCCTTGGACTCCAAAGTATCCAATTGGATTCTCACACAGCATGTCCTGAAAAGGGTTATTGGTGGATTTATTTTGGGGGAAAGTCTCTTTTAGCAAATATAAGACGACACTAGACAAAGGAATCTAtagtagtttttttgtgtgttgaattCCTTTCGAGCacattaaactttatttttt
>XM_039796246.1
CGATCTACCCGGACGACAAGGCGGTGCGGACATGTGTAGCAGCATAATATCCACTGAAAACAGTTAAATCAAAGAATTTCTAAATTCACCATACATGTCGCTTGTTTAACGCTGTTGCGGTGAAGCTAACATGCATGATGTTGATTCGTAAATAATGTCTGACGCTGCTTTAGAGGAAGTTTCAGTGTTATCGTCTATTTACTGCGGAGAAGGAGAGTTCCAACTCATCCAGCAGTCCGCTCAGGATGGGCTCGTGGTCCGAATCAACAGCACTGTCGGAGGAGAAAGAGGGCTGGACGTGAGACTGTTGTTCCATCTGCAGCCCAGCTACCCTTCCTGTCCCCCCGCCATCTCCATCTCTTCCACTGCTCTCTCTAGGACTCAGTGTCACAACATCAGACAGACGCTGCTGGATCAGGCTGCAGCTTTACCTCCAGAACCAATGGTCCATCAGCTGGTGGAGTGGTTGCAGCAGCGTGTGGAGTTGACGGAGAAGTTCAGAGGGGGTGAGGAGGAGGTGAAAGagcgagagggagaggaggagtggACGGCAGTGCTGTCGTTAGACCACATCCGATCCCGGAGTCGTTACATCGGTCTGCTGGAGCGCTGGAGCCGGACGCTGCAGCTCACTGGGAGCTTACTACTGGGACAGAGTATACTGGTGGTTCTGCAGGGAGCCAGACCCAATATCAAGGAGTTCTGTCGCCTTTTGAAGACTGTGAAGGTGGATGTGGATTCTTCAGGCAAGAAATGCAAAGAGAGGATGATGAGGGTTCTCATTGAAAGCCCTTTGTCTTCCTCCTGCGGAAATGGTCTCCAGGGTTTCGTAGTGAAGAACTACGAGTCGTTGCCAGAGCTGGCCGCAGCCTTCCAGGAGATCAACATGACCGAGCTCTACCAGCAGATCCTGCCATCATTAAGGGACTGACAGCACACAGGGTACCATGGTGACCATGGTGACTTGACCTGAACTGAGACAAGATTCAAGGAAGTAGGAACAGGTGCACACAGGAAGAGCTGGCTCCGTTGTGtcaaaatgtgataaaatctggtttataattatattattatattaaggtccagtgtgtaacgtgtttcataatcaaaatctgtgttgcccgttcacaaacttgtcctt
>XM_039796247.1
TCGATCTACCCGGACGACAAGGCGGTGCGGACATGTGTAGCAGCATAATATCCACTGAAAACAGTTAAATCAAAGAATTTCTAAATTCACCATACATGTCGCTTGTTTAACGCTGTTGCGGTGAAGCTAACATGCATGATGTTGATTCGTAAATAATGTCTGACGCTGCTTTAGAGGAAGTTTCAGTGTTATCGTCTATTTACTGCGGAGAAGGAGAGTTCCAACTCATCCAGCAGTCCGCTCAGGATGGGCTCGTGGTCCGAATCAACAGCACTGTCGGAGGAGAAAGAGGGCTGGACGTGAGACTGTTGTTCCATCTGCAGCCCAGCTACCCTTCCTGTCCCCCCGCCATCTCCATCTCTTCCACTGCTCTCTCTAGGACTCAGTGTCACAACATCAGACAGACGCTGCTGGATCAGGCTGCAGCTTTACCTCCAGAACCAATGGTCCATCAGCTGGTGGAGTGGTTGCAGCGTGTGGAGTTGACGGAGAAGTTCAGAGGGGGTGAGGAGGAGGTGAAAGagcgagagggagaggaggagtggACGGCAGTGCTGTCGTTAGACCACATCCGATCCCGGAGTCGTTACATCGGTCTGCTGGAGCGCTGGAGCCGGACGCTGCAGCTCACTGGGAGCTTACTACTGGGACAGAGTATACTGGTGGTTCTGCAGGGAGCCAGACCCAATATCAAGGAGTTCTGTCGCCTTTTGAAGACTGTGAAGGTGGATGTGGATTCTTCAGGCAAGAAATGCAAAGAGAGGATGATGAGGGTTCTCATTGAAAGCCCTTTGTCTTCCTCCTGCGGAAATGGTCTCCAGGGTTTCGTAGTGAAGAACTACGAGTCGTTGCCAGAGCTGGCCGCAGCCTTCCAGGAGATCAACATGACCGAGCTCTACCAGCAGATCCTGCCATCATTAAGGGACTGACAGCACACAGGGTACCATGGTGACCATGGTGACTTGACCTGAACTGAGACAAGATTCAAGGAAGTAGGAACAGGTGCACACAGGAAGAGCTGGCTCCGTTGTGtcaaaatgtgataaaatctggtttataattatattattatattaaggtccagtgtgtaacgtgtttcataatcaaaatctgtgttgcccgttcacaaacttgtcctttt

Function

symbol description
rwdd3 Predicted to be involved in positive regulation of protein sumoylation. Predicted to act upstream of or within negative regulation of NF-kappaB transcription factor activity and positive regulation of hypoxia-inducible factor-1alpha signaling pathway. Predicted to be located in cytoplasm and nucleus. Is expressed in nervous system and pancreatic system. Orthologous to human RWDD3 (RWD domain containing 3).

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34614 True 1602 lncRNA 0.46 3 6390599 6395706
XM_039796246.1 False 1141 mRNA 0.50 5 6382571 6394802
XM_039796247.1 False 1141 mRNA 0.50 5 6382570 6394804

Neighbor

gene id symbol gene type direction distance location
mtch2 mtch2 coding upstream 71430 6295097 ~ 6311140 (+)
trnal-uaa_1 NA coding upstream 329673 6052815 ~ 6052897 (+)
trnal-uaa NA coding upstream 330601 6051887 ~ 6051969 (+)
fadd NA coding upstream 350416 6026435 ~ 6032154 (+)
ano1a ano1 coding upstream 361150 5917556 ~ 6021420 (+)
LOC120555501 NA coding downstream 98231 6493937 ~ 6495721 (+)
bnc1 bnc1 coding downstream 791023 7186729 ~ 7211577 (+)
sh3gl3a LOC100692766,LOC101467334,LOC103355412,LOC102293456 coding downstream 836842 7232548 ~ 7290870 (+)
LOC120555848 LOC107591295,LOC105891088 coding downstream 922203 7317909 ~ 7330702 (+)
adamtsl3 LOC101469981 coding downstream 959171 7354877 ~ 7670801 (+)
G25713 NA non-coding upstream 101783 6278701 ~ 6280787 (+)
G25710 NA non-coding upstream 344601 6036859 ~ 6037969 (+)
G25709 NA non-coding upstream 346781 6035456 ~ 6035789 (+)
G25675 NA non-coding upstream 470117 5911229 ~ 5912453 (+)
G25673 NA non-coding upstream 489545 5892721 ~ 5893025 (+)
G25797 NA non-coding downstream 32352 6428058 ~ 6428260 (+)
G25824 NA non-coding downstream 133812 6529518 ~ 6532184 (+)
G25827 NA non-coding downstream 194489 6590195 ~ 6590618 (+)
G25850 NA non-coding downstream 245744 6641450 ~ 6641983 (+)
G25888 NA non-coding downstream 578629 6974335 ~ 6979755 (+)
LOC120555541 NA other upstream 92794 6262410 ~ 6289776 (+)
G25743 NA other upstream 94493 6287048 ~ 6288077 (+)
G25708 NA other upstream 347377 6034209 ~ 6035193 (+)
tshz3b tshz3 other upstream 1545285 4793815 ~ 4837285 (+)
G25512 NA other upstream 1806925 4570373 ~ 4575645 (+)
LOC120556365 LOC102793592,LOC103366350,LOC101487888,LOC102307622,LOC100694289 other downstream 598250 6993956 ~ 7005678 (+)
G26205 NA other downstream 2357995 8753701 ~ 8760301 (+)
G26236 NA other downstream 2673023 9068729 ~ 9155343 (+)
cers3a cers3,LOC102798777 other downstream 2937523 9333229 ~ 9378611 (+)
adamts17 adamts17 other downstream 2995402 9391108 ~ 9604462 (+)

Expression


Co-expression Network