pop4 (pop4,LOC105418436,LOC104960843)


Basic Information

Item Value
gene id pop4
gene name pop4,LOC105418436,LOC104960843
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6509259 ~ 6524355 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU34654
aaaaagaaggaaaaggaagCGAGAAGCGCTTGTTCGAGCCAAGATTCCCCAGGATCTGGCGAAGGATCTGGGTGTGGAGATACGAGCTTTTCCTGCCTCTGCATGAACTCTGGAGACAGTACGTCATCGACCTGTGCGGTGGTTTGAAACCAACGAGCAATCCACAGTTAGTGCAACAGAAGCTTCTGAAGGCGGACTTCCACGGTGCCATCATCACAGTGGTCCGATCTAAGTGCCCATCATATGTAGGAACGACAGGGATTCTGGTCCAAGAGTTCAAACACGTCTTCAAAATCATCaccaaagaaaacaaactgaaagTGATCCCTAAGAGGAACAGCGTGTTTGCAGTGGAGGTCAACGGCTTCGTCTCCCACATCTATGGAAGCAAGTTTGAGCAGCGAGCCAGTGAACGCTCCGCCAAGAAGTTTAAAGTGAGAGGAACCATCGACCTGTGATGCATCACTACAGGAAGCTGTTTTCCATTCCTACAGGAAGCTGTGTGCCTCAATGAAAGAGCCATTAGACGCTCAGACTTCTACTGACCGTCTAACCGCAATCGGAAGGAACTGCCACAACAATGACCAACGTGTAGCTGGTGCATTGTGGTTATTTATTGTCTATGGCAGTGGTTCCTAAAGTGGGGTCCGTGGGGCGCGGGTTCCAGGAGGTCCccagaaaatattcaaaaacatattttttactttatttttcataCCACATACTGTAAAACCACATCTTAAAGATATGTTTACAGCTTTTGGTTCAGTTTTCACCTTGCTGAATATTGACAGCTTTCACAAATGGGTATGAAATGTTGATCAAATACGTATCTGACGCACTGTAATACAGATGTAGACTACTTAATCTGACATGCCTTATTTTTCATGAGCTACTTGATCCTAATACTGAAGGTCCTGGTTCAAAAATGTTAAGCTAATAACCTGAATGTATTGATATGACGTGAATGAAAGAGGATCTGGAGAATGTGGCCCCTGAAACTGCAAAGAGAAGACGTGTCACTCTGTTGGAGTTGCGTGAACTACAGAAACACTCAGTCCACTCACCATCGTACAGAGTGGAGCTTCTTCCTTGAAAACGGATCTTTGGCTGAGTACAGACAGCGGCTGCAGACAACACAGAGTTTATTTCTGGTTCCTGGTTGTAGTTGTTAACCTAATCTTTGATCGACGTATGTGGATTTAAACGCATGCTTTTTGAtcattttaaatatgtatttttctcAGGCTTTTGCATGGCTGCTTTGAGACAAAAGggaataatgttttattttttttattgtcaaaaaAGTATCAACCCTAACCCAGCTATACGTAATAAAAGCCCAGCCCTGTTGAGTAACTCATATTGGTGTGCACTGATTAAACTGTTGAGTACAAAACAGCAGTAAACCAGTAATAAGTCTTTTTCAGAAGTTTGCTCACAGTGGAGTGAAGAAACAAACCAGAGACTTTAttgcatccttttttttttctttctcggGAGTCATTGAACTGATtgattacatttaaaatatgtcaTATTATGAGCAAGATGGAGACAATGTCCGCTGTTTAACAGCAGCATTCAGTTTGTTTAACTAATTCAGTTTGATTATGTGATGTTTATTGTACAGTAGAGGACAGCGCACCCTTTTTGTAACAGAACATGTGAAACATTGTTGGCTGTACGCTGTACTGGACTGAATACAAATACaactctttctctgtgtacttccctCCTCCTGGAGATGTCTAACACTTTGCCTCTCACACGTTTCCTTGTTAGAGAACTCGTCTATAGCCACATATTCACTGAGCTGAAGGAGACTGTGCTTCCACAGTGCAGAATTGTAGTAGACACAAACACTTTTTGTCAGCGTGCTATTTAAGTGCACCTGAGAGGCCTGCAGCAGGCAGAGGTTTCGCTCagatcagattacagatcaaGATTAATAACCCTGCAGAATCCAGACTTTCAGGTTTGTATCTGGTACATTGTGTGAAGCTaggcttctctacccctttaaaaattatttttataaaacgatggagtctaatctccaaagactgtacattacatattatgtatatgtacaaataaacctttgcatatctgcaacgaagtctctcctggttGAAATGCACTGGCCAATTTGGACAATTTGGAGcagtgaaaataataaaaatgagtgatggctgaattccattagTTTCAGGGTCCTGCATACTGGCTTACTGTCAGGACTGACTGGGACACTTAAATAGAACAGAACCAGCATTCATGTAATTAGCAACACCTGTGCTTCTCCCTTCTGCTGTAGAAAGTGCCTACTATTCTATCTCAACTGCACAGTGGAAGAACAGAATTCCCCTCAGC
>XM_039795883.1
acTTGCAccggaagaagaagaaaaagaaggaaaaggaagCGAGGTCCGTCTTATTCATAGACAGTATACTATTAGATATATAGCTAGCTGATAGCTAGCAGTTTCTCTGCTGTTGAATTCTGCGAAAACATGCCAGTGAGCGAAGCGCTTGTTCGAGCCAAGATTCCCCAGGATCTGGCGAAGGATCTGGGTGTGGAGTCTCTGTCCAGGACTCATGCCCGCGCCTTCGCCCAGGCCTTCCTGAAGAACAGCATTCGGCAGCACAGACACCATGAGATGAAAGACATGTTGAAGCACAAGGCGTTGATCCTGGGCTACGCCAGGCCCAAGAAGGACAAGTCCAAGAGGAAAAGCAAGAAAGCCAAGGGGCTGAACGCTCAGcagaagagggaaaggaaggtCTTCCAGATCAAGCCCGAGCACCAGAGATACGAGCTTTTCCTGCCTCTGCATGAACTCTGGAGACAGTACGTCATCGACCTGTGCGGTGGTTTGAAACCAACGAGCAATCCACAGTTAGTGCAACAGAAGCTTCTGAAGGCGGACTTCCACGGTGCCATCATCACAGTGGTCCGATCTAAGTGCCCATCATATGTAGGAACGACAGGGATTCTGGTCCAAGAGTTCAAACACGTCTTCAAAATCATCaccaaagaaaacaaactgaaagTGATCCCTAAGAGGAACAGCGTGTTTGCAGTGGAGGTCAACGGCTTCGTCTCCCACATCTATGGAAGCAAGTTTGAGCAGCGAGCCAGTGAACGCTCCGCCAAGAAGTTTAAAGTGAGAGGAACCATCGACCTGTGATGCATCACTACAGGAAGCTGTTTTCCATTCCTACAGGAAGCTGTGTGCCTCAATGAAAGAGCCATTAGACGCTCAGACTTCTACTGACCGTCTAACCGCAATCGGAAGGAACTGCCACAACAATGACCAACGTGTAGCTGGTGCATTGTGGTTATTTATTGTCTATGGCAGTGGTTCCTAAAGTGGGGTCCGTGGGGCGCGGGTTCCAGGAGGTCCccagaaaatattcaaaaacatattttttactttatttttcataCCACATACTGTAAAACCACATCTTAAAGATATGTTTACAGCTTTTGGTTCAGTTTTCACCTTGCTGAATATTGACAGCTTTCACAAATGGGTATGAAATGTTGATCAAATACGTATCTGACGCACTGTAATACAGATGTAGACTACTTAATCTGACATGCCTTATTTTTCATGAGCTACTTGATCCTAATACTGAAGGTCCTGGTTCAAAAATGTTAAGCTAATAACCTGAATGTATTGATATGACGTGAATGAAAGAGGATCTGGAGAATGTGGCCCCTGAAACTGCAAAGAGAAGACGTGTCACTCTGTTGGAGTTGCGTGAACTACAGAAACACTCAGTCCACTCACCATCGTACAGAGTGGAGCTTCTTCCTTGAAAACGGATCTTTGGCTGAGTACAGACAGCGGCTGCAGACAACACAGAGTTTATTTCTGGTTCCTGGTTGTAGTTGTTAACCTAATCTTTGATCGACGTATGTGGATTTAAACGCATGCTTTTTGAtcattttaaatatgtatttttctcAGGCTTTTGCATGGCTGCTTTGAGACAAAAGggaataatgttttattttttttattgtcaaaaaAGTATCAACCCTAACCCAGCTATACGTAATAAAAGCCCAGCCCTGTTGAGTAACTCATATTGGTGTGCACTGATTAAACTGTTGAGTACAAAACAGCAGTAAACCAGTAATAAGTCTTTTTCAGAAGTTTGCTCACAGTGGAGTGAAGAAACAAACCAGAGACTTTAttgcatccttttttttttctttctcggGAGTCATTGAACTGATtgattacatttaaaatatgtcaTATTATGAGCAAGATGGAGACAATGTCCGCTGTTTAACAGCAGCATTCAGTTTGTTTAACTAATTCAGTTTGATTATGTGATGTTTATTGTACAGTAGAGGACAGCGCACCCTTTTTGTAACAGAACATGTGAAACATTGTTGGCTGTACGCTGTACTGGACTGAATACAAATACaactctttctctgtgtacttccctCCTCCTGGAGATGTCTAACACTTTGCCTCTCACACGTTTCCTTGTTAGAGAACTCGTCTATAGCCACATATTCACTGAGCTGAAGGAGACTGTGCTTCCACAGTGCAGAATTGTAGTAGACACAAACACTTTTTGTCAGCGTGCTATTTAAGTGCACCTGAGAGGCCTGCAGCAGGCAGAGGTTTCGCTCagatcagattacagatcaaGATTAATAACCCTGCAGAATCCAGACTTTCAGGTTTGTATCTGGTACATTGTGTGAAGCTaggcttctctacccctttaaaaattatttttataaaacgatggagtctaatctccaaagactgtacattacatattatgtatatgtacaaataaacctttgcatatctgcaacgaagtctctcctggttGAAATGCACTGGCCAATTTGGACAATTTGGAGcagtgaaaataataaaaatgagtgatggctgaattccattagTTTCAGGGTCCTGCATACTGGCTTACTGTCAGGACTGACTGGGACACTTAAATAGAACAGAACCAGCATTCATGTAATTAGCAACACCTGTGCTTCTCCCTTCTGCTGTAGAAAGTGCCTACTATTCTATCTCAACTGCACAGTGGAAGAACAGAATTCCCCTCAGCCCATGTTAATAAAGTcattgtgattaaaa

Function

symbol description
pop4 Predicted to enable ribonuclease P RNA binding activity. Predicted to be involved in rRNA processing. Predicted to act upstream of or within tRNA processing. Predicted to be located in nucleolus. Predicted to be part of ribonuclease MRP complex and ribonuclease P complex. Orthologous to human POP4 (POP4 homolog, ribonuclease P/MRP subunit).

NR:

description
ribonuclease P protein subunit p29

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0006379 mRNA cleavage biological_process
GO:0008033 tRNA processing biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0000172 ribonuclease MRP complex cellular_component
GO:0005655 nucleolar ribonuclease P complex cellular_component
GO:0004540 ribonuclease activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03538 POP4, RPP29; ribonuclease P protein subunit POP4

RNA

RNA id representative length rna type GC content exon number start site end site
TU34654 False 2379 lncRNA 0.42 6 6509288 6524335
XM_039795883.1 True 2757 mRNA 0.43 7 6509259 6524355

Neighbor

gene id symbol gene type direction distance location
LOC120555473 NA coding downstream 565 6506363 ~ 6508694 (-)
pcsk6 pcsk6,LOC108237842 coding downstream 27249 6454631 ~ 6482010 (-)
plekho2 plekho2,LOC102775773 coding downstream 130181 6347189 ~ 6379078 (-)
znf414 NA coding downstream 187692 6315510 ~ 6321567 (-)
LOC120555542 NA coding downstream 227735 6278137 ~ 6281524 (-)
nadsyn1 nadsyn1 coding upstream 74320 6598675 ~ 6630288 (-)
ccdc102a ccdc102a coding upstream 323124 6847479 ~ 6901349 (-)
LOC120556364 NA coding upstream 445923 6970278 ~ 6982361 (-)
LOC120556367 LOC104932139,LOC100695351,LOC108237907,LOC102197162,LOC103129685,LOC106520888,LOC101465514,LOC103366349,LOC102224277 coding upstream 481487 7005842 ~ 7023172 (-)
hdgfl3 LOC103366351,LOC102309090,LOC101465811,LOC100694012,LOC106907470 coding upstream 504211 7028566 ~ 7042141 (-)
G25795 NA non-coding downstream 102662 6406388 ~ 6406597 (-)
G25769 NA non-coding downstream 195052 6313983 ~ 6314207 (-)
G25759 NA non-coding downstream 198125 6253323 ~ 6311134 (-)
LOC120555540 LOC107712283,LOC107746645,LOC107663761,LOC107662224 non-coding downstream 298181 6209894 ~ 6211078 (-)
LOC120555539 NA non-coding downstream 383269 6123047 ~ 6125990 (-)
G25828 NA non-coding upstream 5812 6530167 ~ 6531894 (-)
G25837 NA non-coding upstream 71913 6596268 ~ 6596791 (-)
G25848 NA non-coding upstream 111893 6636248 ~ 6638362 (-)
G25851 NA non-coding upstream 117315 6641670 ~ 6641986 (-)
G25874 NA non-coding upstream 175077 6699432 ~ 6739014 (-)
ankdd1a ankdd1a other downstream 162698 6323277 ~ 6346561 (-)
LOC120555534 LOC103369663 other downstream 341730 6156222 ~ 6167529 (-)
LOC120556425 ap2a2,LOC104921433,LOC104965011 other downstream 791826 5680042 ~ 5717433 (-)
G25228 NA other downstream 4232168 2275475 ~ 2277091 (-)
cep89 NA other downstream 4768420 1664770 ~ 1740839 (-)
tpcn2 tpcn2 other upstream 9687 6534042 ~ 6590639 (-)
dok4 dok4,LOC102198948,LOC100694825,LOC102775855 other upstream 117809 6642164 ~ 6693331 (-)
lmnl3 LOC104943683 other upstream 806353 7330708 ~ 7344756 (-)
G26071 mex3b other upstream 1619852 8144207 ~ 8146901 (-)
LOC120555934 NA other upstream 1969998 8494353 ~ 8496635 (-)

Expression


Co-expression Network