tpcn2 (tpcn2)


Basic Information

Item Value
gene id tpcn2
gene name tpcn2
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6534042 ~ 6590639 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU34663
AGCTCATGGCTTTGGTCGCAAGTACTCTGTTGGACCTGGTGAAAAACCTCCGAGCCTTCGCAGGGATACTGATGGTG
>XM_039795655.1
AAGTGATACTTGAGGACAGGACTGGAGGGTGGAGCagagccgagccgagccgagcaGCGACTTCCTAAAAGTGCATTCCTCTGCCCTCAGCTTGAGGCTCGCTATGCTGTTTGAAGCTAACCGTGACTGACGCTTTCTTTGACTTGTTTGTCACTGGCTCAACAGACGGACTAAACTCCGCTTCACGGTTCCACCGGAGCAGGTTTCACCCCGTCTCCTACCACGCTTTCTACTTTCACTTTCCCAGCGGGGGAGCGGAAAACAGAACTTGGGACAGAACTTGTTGATTTCCTGGATGGAAACGGACAGTCTGCTGACCGGGAGTGTGAACGGAGTGTCCGGGGACTATGGCTCCTCGACGGGCGCAGAGGACCGCGGGTCCCCGGGCAGCAGACGGACGTCGTGCACCGTGGCCGGGGACTTGTGCATGGTCGGCGGGGACACAGATGATGAGGACCTCTACATCCAACAAGCTGTTGTATTCATTGAGGATGCCATACAGTTTCGGTCCATCAACCACCGGGTGGATGCCCGCTCTCTCCGCCTGTATCGATGGTACTACTCCAGGATATGCCAGTGGGGCTTGGGCCTAACCATTGCGGTGGTGTTGTTGCTGGCATTCGTGGAGCGCCCGTCCTCCCTGTCCGCTTCCTCGGACCCCCGGCATCGCTCTCCACCCTGGGAGCCTCCCTGCGGCTTCACCGAAAGCATCGAGATGGTCTGCCTTGTCATCTTTACTCTTGATCTTGCTGTTAAGAGCTACTTGATTGGCTGGGAGGAACTCAGAAAGAACAAATGGCTGATCGGCTACACAGTAGTCATTTCAGTCTCCACCATCGACTGGGTGCTATCTGTCAGCATGGTGTGTGATGAGAAACTTCGAGTACGGCGACTCCTCCGGCCGTTCTTCCTCCTGCAGAACTCTTCcctgatgaaaaaaacactCAAGTGCATCAAGAGGACGCTGCCAGAGATCGCCAGTGTCATCCTGCTGCTGGCGCTCCACCTCTGCCTCTTCACTATGATCGGCATGCTGCTGTTTGCTAAAAGTGAGgATCCAGACAAGAACGAGGAGTGGAAGCTACACTTCAGATCCCTGCCTAATTCTCTCACCTCTCTGCTGGTGCTGCTCACCACTGCCAACAACCCAGATGTGATGATCCCTGCCTACTCCCTAAACAGAGGCTACTCCATCTTCTTTGTCACCTTCAGTGTGATTGGAACCTActgtttgatgaatttactgacAGCTATCATCTATAACCAGTTCAGAGGATATTTACTgATGTCGGTCCAAACGTCCATCATCAGGAGACGACTGGGGATCCGAGCTGCTTTCCAAGTCCTCAGCTGCCAGGGAGCCCAGCGGGCTGTCGaGGAGCATGTGCAGGTTGATGTGGTGCTGAAGGTCATGTCCAGGGTCCAGATGAAGTGCTACTACAGAGCAGCCATCACTACGGATGCACAGCAGTATGCAGATGTGGGCTACATGGATCGAGAGCAGTTCACCAAGATATTCGATGCTCTGGATAAAGATCACATTAAAGAGCACCCCCCCTTGCCCCAGTACAACTCCCCAGTTCTGCAGAGATGCCAGGTGATCTTCAGTCACTACTATGTCACAATACTTGGCAACGCAGTGGCACTGGCCAATGTCATTTGCATATGTaccgtcctggtGTTGAATTCTGAAAAGtccacagcagagagagacaacTTTATCATGGAGATCATCAACCTGTGCTTCATCCTGTACTACCTGTTTGAAATGTGCGTGAAGATCTTTGCGTTCGGCTGGAGAGGATACCTGTCCTACAGGAACAACATCTTTGACGGCTTCCTCACCATCCTGCTCCTGGTCCTACAATTCACTATATATGTCACCTACAGGCTTCCGTATTCTGACTGGGACCCATCTTCCCATGGCGTGATGTCTCTGTGGGAGATGCTCCGGTTGATCAACATGTTGATTGTGTTCCGCTTCCTGCGCATCATCCCAGATATCAAGCTCATGGCTTTGGTCGCAAGTACTCTGTTGGACCTGGTGAAAAACCTCCGAGCCTTCGCAGGGATACTGATGGTGGTGTACTatgtgtttgctgtttttggGATCTGGCTGTTTGAAGGAGCCATTAAACCTCCGCCAGAGATGAGtGTGCCCTCCAATTCCTCCATGGGAAACATCACCTCCAGCATGGAGTGTGGCACCTATGAGCAGCTGGGCTACTGGCCAAATAACTTTGACGACTTTGCTGCATCCCTCATTCTGCTGTATGATGTCATGGTAGTCAACAACTGGCAGGCCTTCATGGATGCGTACAGCAGATACACCACTGAgtGGTCGAAGATCTACTTTGTGTGTTGGTGGCTCACCTCCTCTGTCATGTGGGTCAACCTGTTTGTGGCGCTCATCTTAGAGaacttCATCTATAAGTGGGACCGTAGTCACAGATGCTCCGTTACAGATGTGGAGAGGATCCGATATGAAACCTCTGTTCAGCTCATGTTTAGAGAGCAGATCCAGGAGCCAACTGAAGAGGAATTGCTATGTCAACTACACCAACACCCCCACTTACACATACactggtgacacacacacacacacacacacacacagtatcattTATTGTTACTAAATGAGTCTATTGTGTGGTAGAAGTACTGAAAGGGTCAATATTACAGCATTCTAATACTataattaatgtattttaattttggATTACTACTGAAACAAGTAGGAAGCACATGTTATGATTTGTCATGTTCATGAACCACTGCAAGCTGTAGCCTACACAGGTTTCTACCTGGTAGAGGCTCTGTGGAGGCAGACGTCATGTCATTGGTTGAGATCAACATGATTGGGCGGAGCTAAAGAACCACAAGTTGTGGGCCAAATccatactgtaatactgtaaaGTATCTTTGCAATAACTGCACAAGAAATGAATCAAACTGCGACAACAAAAAGCTCCTGCcaattttaaattaaaggaACGCCACATAGAATTTTCCAAATTTCCGAATGTAACTACTTTATGATTTGTTTGCCAAGCTGTGGCACCAACGTCCTCGAGAGTTTCACTAGAGTGAAAACAACTGAATGGAGTTTGGGAAGGGCTTCCAGTGGCGgttcaaaaaacattaaagcgattttaggggtaccaaatacagtatattaagcACAAGGTCTGGTTCTCCCATGAACTACACTATGATAATTAGCCTGGCATTGTCAGACCCATccgtaaggtctggctactgcTAATCATTCtgggaaagggaaaaaaaggcctctggcttgtttgtatttctttaaaccaatcaacaACCGTTCTGGGCGGGGGTGAGAGGGGGTGCCAGGTGTCCAGGCTTCATCGCAGCAATGTACatctgttgagccagactaTATAACAATGAAAACAAGAACACTCATTCAGtgttaatgtacatttcagttaTCACTGCCAATCAATACTATATTACAATTTCAGGAGGGCACAATATAGGCATAATATAGGCCCCTGTAGGCTTAATATTACAAGGGCACTGCCCTTCCCCCCCAGAGCCTCCAGAGCAGTGTTTTCTCAAAATGGGGGTACCACACATACTTTTGAGTACTGCAAGGGGtacgtgaatgtgtgtgtgtttttatgtaaagttaaaaaaataccaGTCAAGCATAGTTCCTAAAATAATTTTActgttaataatgtaataatgaatgaatttagtgatggattctaaacatttcaaataaaaatttGAGTGTTTTTCCGTTACAAGGTTACTGTTTAGTAAATCAGACACAGCGCTGTGCTGTAATGTGCCTCTATATAGCCTAGGTTGTTGTTCTACCAAATATGTTTTACGCTGTTTATTGCCACTTTATTGAAATAAGAGAACCACTTAAATATGggttgtatatgtgtatgtatatatgtgtgggtACTGCTGCTGTAAAATGAGAATAACCTTTATTGTGCTTGTTTACAAAGAATTAGCAGATGTGATCTTTCACTGGATGCAGTCATTGCACCACTAAAACCATAAAAGACTATGCGGAAACTCAAAAGTGAAATGGCTTCACCAGCTTTTTAAGAAATCTGATCTTGCTCCCAGTGACTTTTGCCTCTTTCACACGGGGAACCTACAACATTTTCCCAATGTGATTTGCTATGTGGAACACATTTAAGTTGTCTCTTTGAGGGACCATCCTAGATGGGTTGGTGTCTTTTCTCCTCTGCACTGCAGGAGTGTACGTATAGTGTCACAGAAAAGTAAGAAGTAAAGAAGTAAAATAACTGTGCACAACAGCAGTTGCCCCTTTTCCTTGCCGCTGACACCCTGTTAAAACCGCAACCCCACTTCACCCTGCAGTAGCCAATCATGTAGCCGGAGCCCTGtagaggaaacaggaaacatcactgcctctatcgctgccacaagaaagccAAAGAACACCAAACACAAGTTCAGAACTGCCcgtgaaatgtttttttgcaggatggtaggggaagactcatgaatattcattatGGAACTCAACCCTGAATGGCTAGTACTtgttgcctgc

Function

symbol description
tpcn2 Predicted to enable NAADP-sensitive calcium-release channel activity and voltage-gated calcium channel activity. Acts upstream of or within calcium-mediated signaling; regulation of myotome development; and skeletal myofibril assembly. Predicted to be located in lysosomal membrane. Is expressed in slow muscle cell. Orthologous to human TPCN2 (two pore segment channel 2).

NR:

description
two pore calcium channel protein 2-like isoform X2

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG:

id description
K14077 TPCN2; two pore calcium channel protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU34663 False 77 lncRNA 0.53 1 6543090 6543166
XM_039795655.1 True 4573 mRNA 0.47 25 6534042 6590639

Neighbor

gene id symbol gene type direction distance location
LOC120555473 NA coding downstream 25348 6506363 ~ 6508694 (-)
pcsk6 pcsk6,LOC108237842 coding downstream 52032 6454631 ~ 6482010 (-)
plekho2 plekho2,LOC102775773 coding downstream 154964 6347189 ~ 6379078 (-)
znf414 NA coding downstream 212475 6315510 ~ 6321567 (-)
LOC120555542 NA coding downstream 252518 6278137 ~ 6281524 (-)
nadsyn1 nadsyn1 coding upstream 8036 6598675 ~ 6630288 (-)
ccdc102a ccdc102a coding upstream 256840 6847479 ~ 6901349 (-)
LOC120556364 NA coding upstream 379639 6970278 ~ 6982361 (-)
LOC120556367 LOC104932139,LOC100695351,LOC108237907,LOC102197162,LOC103129685,LOC106520888,LOC101465514,LOC103366349,LOC102224277 coding upstream 415203 7005842 ~ 7023172 (-)
hdgfl3 LOC103366351,LOC102309090,LOC101465811,LOC100694012,LOC106907470 coding upstream 437927 7028566 ~ 7042141 (-)
G25828 NA non-coding downstream 2148 6530167 ~ 6531894 (-)
G25795 NA non-coding downstream 127445 6406388 ~ 6406597 (-)
G25769 NA non-coding downstream 219835 6313983 ~ 6314207 (-)
G25759 NA non-coding downstream 222908 6253323 ~ 6311134 (-)
LOC120555540 LOC107712283,LOC107746645,LOC107663761,LOC107662224 non-coding downstream 322964 6209894 ~ 6211078 (-)
G25837 NA non-coding upstream 5629 6596268 ~ 6596791 (-)
G25848 NA non-coding upstream 45609 6636248 ~ 6638362 (-)
G25851 NA non-coding upstream 51031 6641670 ~ 6641986 (-)
G25874 NA non-coding upstream 108793 6699432 ~ 6739014 (-)
G25875 NA non-coding upstream 197703 6788342 ~ 6788627 (-)
pop4 pop4,LOC105418436,LOC104960843 other downstream 9687 6509259 ~ 6524355 (-)
ankdd1a ankdd1a other downstream 187481 6323277 ~ 6346561 (-)
LOC120555534 LOC103369663 other downstream 366513 6156222 ~ 6167529 (-)
LOC120556425 ap2a2,LOC104921433,LOC104965011 other downstream 816609 5680042 ~ 5717433 (-)
G25228 NA other downstream 4256951 2275475 ~ 2277091 (-)
dok4 dok4,LOC102198948,LOC100694825,LOC102775855 other upstream 51525 6642164 ~ 6693331 (-)
lmnl3 LOC104943683 other upstream 740069 7330708 ~ 7344756 (-)
G26071 mex3b other upstream 1553568 8144207 ~ 8146901 (-)
LOC120555934 NA other upstream 1903714 8494353 ~ 8496635 (-)
il16 LOC102796330 other upstream 2039969 8630608 ~ 8697622 (-)

Expression


Co-expression Network