adamts17 (adamts17)


Basic Information

Item Value
gene id adamts17
gene name adamts17
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9391108 ~ 9604462 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU35242
GGTGCTGCTCTTTCATGACCAGAGCTACGGGATCCACTATGAGTACACTGTGTCCCTGAACACAACTCAGGACAGGAGCAGTGAGGAGCCAAGGGAGCCAGAGTATCTCTACATCTGGACACACAGCAGCTGGCAGGACTGTACTGTTCAATGTGGaggaggtGAGAGAAGGACAGTGGTTTCCTGTATGAGAATAGTCAATAAAACAATGGAGGCTGTCAACGATAGCTACTGTCAACCTGAGAACCGACCACACCCCCAAGTGGGTGACAGGAGAGTGGGGATCCTGCTCCGTCACATGTGGTAAAGGTGTTCAGCAGAGGGACGTGGTTTGTGTTTACCATTTTCAGAATGGCTCACTCATCCACACCAGGGATCTGTATTGCCAAGGAGGAAAACCTCCTGTTGTGCAGGGCTGTGAGGGCCGCCTCTGCCTCACTTTGTGGGAGGCTTCAGAATGGTCCAAGTGTTCATCGGGCTGTGGTCCAGGTGTTCACAAGCGGACGGTGTCATGTACAAACCCTCAGGGTCTGTGTGATCCTCTGTCCCAGCCCACTCAGGAGGAGCCCTGTGAGGACTACTCTAGATGTTACGAATGGAAGACTGGAGACTGGTCCAAGTGCTCGTCATCCTGCGGGAAGGGCCTGCAGTCGCGAGTGGTCCAgtgtatgcacaaagtgactggACGTCATGGTAACGACTGCCCAGTGACGCTGAGACCACCGACCTACCGGCCCTGTCACCATGGTACCTGCAACGACAAAATCAATGTGAACACCATTACCTCTCCCAGGCTAGCTGCTCTGACCTACAAATGCATGGGGGACCAGTGGACAGTGCACTGTCGTGTGATCCGAGAGAAGAACCTTTGTCAGGACATGAGGTGGTACCAGCGCTGCTGTGAAACCTGTAGGGACTTTTATGCCAAGAAAATACTGCACAAGAGCTAATGACCAAATGCACCTACTTGTCCTCTACATAACActcttttttgtaaatgtttttaatattgttAAATGTTAAGAAAGTATAATGGTAAGAAAACCATTTCTACTGTTGATGGaactttttgtatttaaaaaaagaaaatggcaagtacacataaatgtacattttaaatgagc
>XM_039795147.1
CTGTGTAGGCGTACCCTGCGCTAGAAGTCACTCCAGCCTGAATTACTGCAACTTCTCCAAGTTTTGGAAAAACTGCGCCGTCTGCTCAGTGCTTTGCAAAGCGCTTCAGTCCCCTCACAATAAAATCACTCACCTCTTCCAGTTTATTCTATCCTGCTTTGCCTTATCATGCATAACAGCCATGTCACCCATgtgctcttctctcttctctgcaTCGCATTGAGTGCCCAGTCTGAGCCAGAGATAGACGAAGTGGTTCCCAGGCTGCTGTCCGGGCAGGAGGCGCACCTGTCCCCGGACCACACTGCCCGCACACTGCGGCGCCGCGGCCAGCGCTCCCTGGACGCCCCGGGTGGAGGACATTCTGACCCGGATAACATAATTCTGTCACTGCCGGCTTTCGGAAGGAGTCTGTATTTAAATCTGACGCGGGACAGCGCGTTTCTGTCAGGGGACTTCGTGGTCGAGGAGAGGCTTGGGGAGCAGAGCGCAGCGGTGAGCCGCTTATCCACGAAGCAGCTGTGCTTTTACTCCGGCTCCATTATCAACCACACTGACTCCCTGGCATCACTGAGCACCTGTGGCGGCCTGACTGGGCTCATCCAGCTCGGGGAGGTCAGCCTATTCATTCAGCCGGTGGGTGAAAGTGGCCCCTCCCAGTCGTTCTCCGGACTAAAACACCGGCTGCTGCGAAACAGACGCTGTGCCAAGACCAGCTCTGCTCCAGATGTTGACCAGCCGAACTACTGTGGGACTGTACAAGggaagaagaagaagatgtcAAAAGTGGACGAGGAGGGTCGCGGCAAGAGAAACGTCATTCGCTTGCACGAAGCATACACAGTGGAGACAGTGGTGGTGGCAGACTCCGACATGGTGCACTACCACGGGGCCGAGGCGGCACAGAGGTTCTTGCTGACAGTCATGAACATGGTCTACAACATGTTCCACCACCAGAGTCTGGGAGTCAGGATCAACATTCGTGTCACCAAGCTGGTGCTGCTTCATAGACGCCCAGAGAAGCTAAAGGTGGGCCATCATGGAGAAAGGTCTCTGGAGAGCTTCTGTCATTGGCAGTATCAGGAGTTTGGGGGTCCCCGGTACCTCGGCACCAACCACGTTCCTGGGGGAAAGGATGACATCCCACCAGTGGATACTGCTGTGCTGGTCACCAGGACAAATTTCTGCGTTCATAAAGACGAACCCTGTGATACTGTGGGTATTGCTTATCTGGGGGGTGTCTGCAGTGCCAAGAGGAAGTGTGTGTTAGCAGAAGACAATGGACTCAATCTGGCCTTCACCATTGCTCACGAACTGGGACACAACATGGGCATGAGCCATGATGACGACCATGCCACGTGCACTGGTCACTCGGACATCATGTCTGGGGAATGGGTGAAAGGAAGAAACCCCAGCGACCTGTCCTGGTCCTCCTGTAGCCGCGACGACCTGGAGAACTTCCTCAGGTCCAAAGCAAGTGGCTGCCTTCTGCACACCGACCCCAGAAGCCGTTACCAGGTCCGGCTTCCTCCCAAGCTGCCAGGCATGCACTACAGTGTGGATGAACAGTGCCAGATCCTGTTTGGATCTAATGCCACTTTCTGCAATGACATGGAGcacttGATGTGCGCTGGCCTGTGGTGTTTAGTAGAGGGAGATGCATCCTGCAAGACCAAACTGGATTCTCCTCTGGATGGAACCGAGTGTGGAGCAGACAAGtGGTGCAGGGCAGGCGAGTGTGTCAGTAAGACTCCCATCCCTCAGCATGTGGACGGGGACTGGAGTCCATGGAGCCAGTGGAGCATGTGTAGCAGGACCTGCGGTACTGGAGTCCAGTTCAGACAGAGGAAATGTGACAACCCTCCgccTGGACCTGGTGGGCGACACTGCCAGAAGTCCAGTGTGGAGCACAAGGCTTGTGAGCGTCCTCCCTGTCCCAAGGGAGCGCCCAGCTTCAGAGACCTGCAGTGTCTGTCTTACAACAGACACGCAAACAGCAAGAAGAAGGGCAGCATGCTGACTGCTATTATTAATGatgagaAGCCGTGCGTGTTGTTCTGCAGCCCAGTAGGTCGAGATGTCCCAGTCCTGATGGCTGACAGAGTGATGGACGGGACGCCCTGCGGACCATACGAGGCCGACCTGTGTGTGAACGGAAGGTGTCAGAAAATTGGCTGTGACGGCATCATCGGCTCTTCAGCCAAAGAGGACCGCTGTGGTGTTTGTAATGGAGATGGGCGCTCCTGTAAGATAGTGAGAGGAGACTTCAACCACACCAAAGGAATGGGCTACATCGAAGCTTTGGTTATCCCTGCAGGAGCCAGGAGGATCAAAGTTGTGGAGGACAAACCCTCACATAGCTTTCTGGATGACAATGGCCCTCTGGGGACTCGGTCCCCAGGGACCTCATTTCCCACGACTCTGCCGGCCAATGGTGGTGCACAGGGCTTCAGAGAGCCAGGGATGAGGGCGAGCAGGCAGGTGCTGCTCTTTCATGACCAGAGCTACGGGATCCACTATGAGTACACTGTGTCCCTGAACACAACTCAGGACAGGAGCAGTGAGGAGCCAAGGGAGCCAGAGTATCTCTACATCTGGACACACAGCAGCTGGCAGGACTGTACTGTTCAATGTGGaggaggtGAGAGAAGGACAGTGGTTTCCTGTATGAGAATAGTCAATAAAACAATGGAGGCTGTCAACGATAGCTACTGTCAACCTGAGAACCGACCACACCCCCAAGTACGATTCTGCAACTCTCACCCCTGCCAGTAtcgGTGGGTGACAGGAGAGTGGGGATCCTGCTCCGTCACATGTGGTAAAGGTGTTCAGCAGAGGGACGTGGTTTGTGTTTACCATTTTCAGAATGGCTCACTCATCCACACCAGGGATCTGTATTGCCAAGGAGGAAAACCTCCTGTTGTGCAGGGCTGTGAGGGCCGCCTCTGCCTCACTTTGTGGGAGGCTTCAGAATGGTCCAAGTGTTCATCGGGCTGTGGTCCAGGTGTTCACAAGCGGACGGTGTCATGTACAAACCCTCAGGGTCTGTGTGATCCTCTGTCCCAGCCCACTCAGGAGGAGCCCTGTGAGGACTACTCTAGATGTTACGAATGGAAGACTGGAGACTGGTCCAAGTGCTCGTCATCCTGCGGGAAGGGCCTGCAGTCGCGAGTGGTCCAgtgtatgcacaaagtgactggACGTCATGGTAACGACTGCCCAGTGACGCTGAGACCACCGACCTACCGGCCCTGTCACCATGGTACCTGCAACGACAAAATCAATGTGAACACCATTACCTCTCCCAGGCTAGCTGCTCTGACCTACAAATGCATGGGGGACCAGTGGACAGTGCACTGTCGTGTGATCCGAGAGAAGAACCTTTGTCAGGACATGAGGTGGTACCAGCGCTGCTGTGAAACCTGTAGGGACTTTTATGCCAAGAAAATACTGCACAAGAGCTAATGACCAAATGCACCTACTTGTCCTCTACATAACActcttttttgtaaatgtttttaatattgttAAATGTTAAGAAAGTATAATGGTAAGAAAACCATTTCTACTGTTGATGGaactttttgtatttaaaaaaagaaaatggcaagtacacataaatgtacattttaaatgagctcATAAACTTCTAGATTTGATGAAAA

Function

symbol description
adamts17 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in Weill-Marchesani syndrome. Orthologous to human ADAMTS17 (ADAM metallopeptidase with thrombospondin type 1 motif 17).

NR:

description
PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 17

GO: NA

KEGG:

id description
K08631 ADAMTS17; a disintegrin and metalloproteinase with thrombospondin motifs 17

RNA

RNA id representative length rna type GC content exon number start site end site
TU35242 False 1124 TUCP 0.49 6 9566831 9604436
XM_039795147.1 True 3665 mRNA 0.53 23 9391108 9604462

Neighbor

gene id symbol gene type direction distance location
LOC120556464 NA coding upstream 94391 9261211 ~ 9296717 (+)
abhd17c abhd17c,LOC102793890,LOC100694079 coding upstream 299598 9056333 ~ 9091510 (+)
mesd mesdc2 coding upstream 640228 8745162 ~ 8750880 (+)
stard5 stard5 coding upstream 769396 8604276 ~ 8621712 (+)
LOC120556467 tmc3 coding upstream 789430 8545261 ~ 8601678 (+)
lins1 NA coding downstream 27545 9632007 ~ 9642958 (+)
lrrk1 lrrk1 coding downstream 256690 9861152 ~ 10096639 (+)
LOC120555943 LOC103372586 coding downstream 820701 10425163 ~ 10465554 (+)
LOC120555947 hnrnpab,LOC100707314,LOC102779500,LOC101480042 coding downstream 880001 10484463 ~ 10485311 (+)
LOC120555948 LOC103462314 coding downstream 923376 10527838 ~ 10609081 (+)
G26297 NA non-coding upstream 90901 9299488 ~ 9300207 (+)
G26276 NA non-coding upstream 146655 9240665 ~ 9244453 (+)
G26273 NA non-coding upstream 152543 9236352 ~ 9238565 (+)
G26218 NA non-coding upstream 570124 8820753 ~ 8820984 (+)
G26217 NA non-coding upstream 574492 8816407 ~ 8816616 (+)
G26347 NA non-coding downstream 2281 9606743 ~ 9608997 (+)
G26367 NA non-coding downstream 117761 9722223 ~ 9722683 (+)
G26368 NA non-coding downstream 122730 9727192 ~ 9727740 (+)
G26386 NA non-coding downstream 141675 9746137 ~ 9791753 (+)
G26391 NA non-coding downstream 189507 9793969 ~ 9794192 (+)
cers3a cers3,LOC102798777 other upstream 12497 9333229 ~ 9378611 (+)
G26236 NA other upstream 235765 9068729 ~ 9155343 (+)
G26205 NA other upstream 630807 8753701 ~ 8760301 (+)
LOC120556365 LOC102793592,LOC103366350,LOC101487888,LOC102307622,LOC100694289 other upstream 2385430 6993956 ~ 7005678 (+)
rwdd3 rwdd3 other upstream 2995402 6382570 ~ 6395706 (+)
asb7 asb7,LOC102792420 other downstream 49116 9653578 ~ 9677027 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other downstream 210235 9814697 ~ 9860000 (+)
lto1 oraov1 other downstream 2298810 11903272 ~ 11912722 (+)
G27086 NA other downstream 3505295 13109757 ~ 13110339 (+)
LOC120556202 NA other downstream 3630773 13235235 ~ 13237819 (+)

Expression


Co-expression Network