G26452


Basic Information

Item Value
gene id G26452
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10099383 ~ 10101417 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU35375
atgaatatttgtgatGATCAGAACTGAAGTTGCACTTGGTGAAGTggaaaatattaatatataattgtatggtagttttttttacatagacATTTAGTCCTCTAGGGACATCagagctagcctggctccgccctcctacatacttccgctcaatttttaTTTccccttcagtactccgtctagGTTTGTactatattcttgggttttctccggccaaatatttggtgGTCCAATCAGTTAAccgagggagtggctgagaacgatgacgttgaggacgtgcgctagaaagatgcgagcgaagccattcagtccgttgtggcaacactGCCGAATAttcagaagttaaagcccgagcaagaacaatatttgctgagttgtgttggtggccatgatgttgtggccctcctccccacagggttcgggaaaagttagattttccagttGTCGGTCTCTCTTATTGCTCacaaccaaacgttagcgattggttatggcagattcagagtggctctgggcagatccaatagttttaaagttAAACAGCTTACCTGCCTTCAAAGAAGTTAACACTTTCCAATGGAGAGTGGTTATGGCAGGGCCATAACTAGGGCAGGGCCTGGCTACATCAGAGCAActtttttaaagatatgaacAAGGGTTAGTTGTGTGGTTACAATGACAAGCTGTCAGTCACAGTGTAAAGGCTGAGATTCACTTCAGAAGACCATTACTCCCCACATgattttacatatttttcataattttatcTTTTGTTGTCTTAAAGCGTAACtgtcgccaaaatgcaacctaggggctttttgtgaatatacccaagtcaaacttttgtttaaaagcataattacaacggaaacgccacttttaaagtgcccatattatgctcattttcaggttcataattgtattttgaggttgtaccagaataggtttacatggtttaattttcaaaaaacactatatttttgttgtactgcacattgctgcagctcctcttttcactttgtgtgttgagctctctgttttagctacagagtgaggcatcacacttctatcccatctttgttgggagtcgcacatgcgcagtaggtAATTactgcgcagtagctaggtactAGTGGTTAGCGTTGCTAGcagttagccacctcgttctcaatggcaaaacactgctacaacacacacgagttcaccctaatctgcaaaagaaattgtatagaactattTACATGTCCCttgtctgcaggtattccacgcatagttggaagtgcgcccttgtttagaagaagtctcccggctaatcctgccttgtactgactgaagttggagaaacagctagctgatgtggtattagctaaagtggttaggacacaccaaatgtttcggccGATGACGTAGACGGCCCTGctgattttgaccagctcacccggagactgaaggcaggatacatttgaaggcaggatacattcagaaacccgtatctcattcaaaacagcatggatttttttttccaagtttgtatgcgtatggaagcaccagagacacaaaataacaccccaaatcccagaaaaagtgattttttcataatatgggcactttaagatttACACTTTGACACTTTTTGACTGGCTAGATGGACGGCGACGGGAAAAACCAACAGCTACAGTGAAAACAgttaaaacctttctttttagtaaactctgtctacacaaacaatgttctcaatgctcaaGTTCATGTGTAGACCCCCTGTTGATACTtagagcaaagtttcatgttgtgtcgagccttcttagtgttttaaaaatagcgattatgatgctatcatagtagtgcccctagcactaccattcaaaaggccatttgaccaaaaACGAGAATttggtaaatcttaaaagtggcctttccgtcct
>TU35376
ggtttaattttcaaaaaacactatatttttgttgtactgcacattgctgcagctcctcttttcactttgtgtgttgagctctctgttttagctacagagtgaggcatcacacttctatcccatctttgttgggagtcgcacatgcgcagtaggtAATTactgcgcagtagctaggtactAGTGGTTAGCGTTGCTAGcagttagccacctcgttctcaatggcaaaacactgctacaacacacacgagttcaccctaatctgcaaaagaaattgtatagaactattTACATGTCCCttgtctgcaggtattccacgcatagttggaagtgcgcccttgtttagaagaagtctcccggctaatcctgccttgtactgactgaagttggagaaacagctagctgatgtggtattagctaaagtggttaggacacaccaaatgtttcggccGATGACGTAGACGGCCCTGctgattttgaccagctcacccggagactgaaggcaggatacatttgaaggcaggatacattcagaaacccgtatctcattcaaaacagcatggatttttttttccaagtttgtatgcgtatggaagcaccagagacacaaaataacaccccaaatcccagaaaaagtgattttttcataatatgggcactttaagatttACACTTTGACACTTTTTGACTGGCTAGATGGACGGCGACGGGAAAAACCAACAGCTACAGTGAAAACAgttaaaacctttctttttagtaaactctgtctacacaaacaatgttctcaatgctcaaGTTCATGTGTAGACCCCCTGTTGATACTtagagcaaagtttcatgttgtgtcgagccttcttagtgttttaaaaatagcgattatgatgctatcatagtagtgcccctagcactaccattcaaaaggccatttgaccaaaaACGAGAATttggtaaatcttaaaagtggcctttccgtcctaattatgcttttaaacgaaagtttgactctggtatattcacaaaaagaccctaggttgcattttggcttGAGTTACGCTTTAAATCGACACATTTGCATTTCTACAGTGCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35375 True 1922 lncRNA 0.42 1 10099383 10101304
TU35376 False 1086 lncRNA 0.41 1 10100332 10101417

Neighbor

gene id symbol gene type direction distance location
lrrk1 lrrk1 coding upstream 2744 9861152 ~ 10096639 (+)
lins1 NA coding upstream 456425 9632007 ~ 9642958 (+)
LOC120556464 NA coding upstream 802666 9261211 ~ 9296717 (+)
abhd17c abhd17c,LOC102793890,LOC100694079 coding upstream 1007873 9056333 ~ 9091510 (+)
mesd mesdc2 coding upstream 1348503 8745162 ~ 8750880 (+)
LOC120555943 LOC103372586 coding downstream 323746 10425163 ~ 10465554 (+)
LOC120555947 hnrnpab,LOC100707314,LOC102779500,LOC101480042 coding downstream 383046 10484463 ~ 10485311 (+)
LOC120555948 LOC103462314 coding downstream 426421 10527838 ~ 10609081 (+)
LOC120555949 NA coding downstream 640293 10741710 ~ 10745326 (+)
shcbp1 shcbp1,LOC104947898,LOC104967817 coding downstream 688428 10789845 ~ 10840149 (+)
G26453 NA non-coding upstream 299 10097299 ~ 10099084 (+)
G26391 NA non-coding upstream 305191 9793969 ~ 9794192 (+)
G26386 NA non-coding upstream 307630 9746137 ~ 9791753 (+)
G26368 NA non-coding upstream 371643 9727192 ~ 9727740 (+)
G26367 NA non-coding upstream 376700 9722223 ~ 9722683 (+)
G26456 NA non-coding downstream 12496 10113913 ~ 10114187 (+)
G26457 NA non-coding downstream 16669 10118086 ~ 10118347 (+)
G26458 NA non-coding downstream 19184 10120601 ~ 10120852 (+)
G26460 NA non-coding downstream 20512 10121929 ~ 10122337 (+)
G26464 NA non-coding downstream 23116 10124533 ~ 10124762 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other upstream 239383 9814697 ~ 9860000 (+)
asb7 asb7,LOC102792420 other upstream 422356 9653578 ~ 9677027 (+)
adamts17 adamts17 other upstream 494921 9391108 ~ 9604462 (+)
cers3a cers3,LOC102798777 other upstream 720772 9333229 ~ 9378611 (+)
G26236 NA other upstream 944040 9068729 ~ 9155343 (+)
lto1 oraov1 other downstream 1801855 11903272 ~ 11912722 (+)
G27086 NA other downstream 3008340 13109757 ~ 13110339 (+)
LOC120556202 NA other downstream 3133818 13235235 ~ 13237819 (+)
slc35c1 slc35c1 other downstream 3570060 13671477 ~ 13676613 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other downstream 3708518 13809935 ~ 13856423 (+)

Expression


Co-expression Network