G26816 (vps35)


Basic Information

Item Value
gene id G26816
gene name vps35
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11606323 ~ 11609317 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU35811
ctgtgtaaaaacaaaatgcaaataTGTATTGttaattgttattttatttcagCAAATGACAATGagaattgtttttttctgtatctGATTTACAAGAGGGTTTTCACACAGATTtaaaaaggggagagaaaatGGTCAATTCCCTCTCCAATAAATCAACAATAGCTAAGGAAGAGAAATCAGCAGACACTGTCAGAAGCTGCAGCACATGTATACATCAGTAGGTTCTCAGTATGGCAACTTGTCAACTAGCATACAATCCTGAGAAATCTCTGCACCCTCCCACAACATACTAACCCCAATGACAGTGTCGCCAAGCAACAGGATTTAATTAATCAACAAAATTTGGAAACAGTCAAGACATTGTAGTTGGTGGGATCCATgtagagtaaactgaaaaccaggCCTTATATTACAAGCACACTAAATCAGGCAAATACATGCTGCAGTTCTGAACGTGCCAATCCATTGGTGAGAAGTCCAGAAATCAACAATACATGAAATATGGAGTCCATAGAGAGATGAGAGACAAATCTGATGTTATTAAGAAGAAGCACTGCTTAAGCATGAGAGGATCTTGTCAAAATGACAATTTTCCCACCTATAAATCCCTAGATTTGTAAGgttatttgtatttctttgcaGCCCAGCTGGGACAGCAGAAGAACTGGATCATGCAAAATGCTGCACAATTATTAACTGAATTGACCGACCAGGTGATAAAGACGCTTTTAATGGAAACAACATTGTTTGCACTGTTCCTGTGGGGCCATAGTTTGCATGTACTTCCATACATCAGGTCTTCAGTTTCGCTTGTTCCAACCAGTTTAAAAATAGCTACAAAGCCATCCCAAGGAACAGCAGTTATTCAGGGGTTATTCGTATGCAATACAGCTGTAACACCAATACTAGATCTTGTAGCCGTTATACACTCACGGCAATACATTCACTTCTCAATATGGAAAGATGCGAACACATGAGGGGTTGATGACTCAGCAGGTACACCTACAACAGCTAGTAAATCTATTGATAATCAAAGGAATAGTGCCTACGACTTGCCACAAGTGCACGTTAAAGCTAAGTGCAGTGTTGTTGGCAcacgcttctcaaatgtaacaTCTCCAACCTGTTGCAGAAAACCATTCTGCAAGTGAGGGACGGTGAAGAGGAAATGATGcagaaaaattaataataataaaatgaaggagTGAGTACTTTAGCTCTTcttgatatttatttttattcccgGCCTACAGGATGGGATTTTGTGAGTTCTTGTGAGTGTGTGCTGttgtatatttataatatagtgAAACATCTATGGATGGACTTCACATCCTTCCAACCTGCGTGAGTTTTAAAGGACCAGGCCCTCATAGGCAGGGCCCTCAGACTCGGGGGATTCTCTCTGCAGGCGAAGATGCTCCAGTGTGTTGTGGAAGTGTTTGTTGATCTGCTCCGTTTCCTCACTCGCCTCCAGGTTGGGAAGGTCTTCTCTGATCTTCTGGATAAGCTGGTTTAATACCTGGACAGTCACCTGGACAGGTGGAGGATGAGGGACAGTTGCTGCGACCTGACCAAAAGAGATGGGCGCAGATACTGACGGCTCGGCACTGGTCAGGCTTCTTCAGCAGCTTGGAGGCAGCCAGCGCACACTGAGTCCTCAGCGGCTCATGGTTTTCCTCGCTGAAACACCGCATTCGCTCAAAGGTACCAATGATCAGTGTGATGGCTGCCAACTGGGCTTTAGAGTCACTGATCTCATCCTCGTACAGAGAGAAGG

Function

symbol description
vps35 Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be part of retromer complex. Predicted to be active in late endosome. Human ortholog(s) of this gene implicated in Parkinson's disease and Parkinson's disease 17. Orthologous to human VPS35 (VPS35 retromer complex component).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 35

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35811 True 1783 lncRNA 0.43 3 11606323 11609317

Neighbor

gene id symbol gene type direction distance location
minar1 kiaa1024,LOC107562943,LOC102799073 coding upstream 467925 10934633 ~ 11138398 (+)
LOC120555826 NA coding upstream 474851 11129921 ~ 11131472 (+)
shcbp1 shcbp1,LOC104947898,LOC104967817 coding upstream 766174 10789845 ~ 10840149 (+)
LOC120555949 NA coding upstream 860997 10741710 ~ 10745326 (+)
LOC120555948 LOC103462314 coding upstream 997242 10527838 ~ 10609081 (+)
LOC120556595 NA coding downstream 422304 12031621 ~ 12031728 (+)
LOC120555527 NA coding downstream 946730 12556047 ~ 12562553 (+)
LOC120556313 LOC104939823,LOC100707594,LOC101479997,LOC105924362 coding downstream 1456635 13065952 ~ 13071332 (+)
LOC120556474 NA coding downstream 1480218 13089535 ~ 13091435 (+)
si:cabz01068815.1 NA coding downstream 1535190 13144507 ~ 13176403 (+)
G26781 NA non-coding upstream 140155 11465951 ~ 11466168 (+)
LOC120555674 NA non-coding upstream 226823 11378435 ~ 11379500 (+)
G26748 NA non-coding upstream 270516 11335435 ~ 11335807 (+)
G26746 NA non-coding upstream 276666 11325943 ~ 11329657 (+)
G26745 NA non-coding upstream 288069 11317935 ~ 11318254 (+)
G26817 vps35,LOC102795814 non-coding downstream 1442 11610759 ~ 11615676 (+)
LOC120556208 NA non-coding downstream 116301 11725618 ~ 11728296 (+)
G26861 NA non-coding downstream 156350 11765667 ~ 11765967 (+)
G26878 NA non-coding downstream 202366 11811683 ~ 11811942 (+)
LOC120556354 NA non-coding downstream 329757 11939074 ~ 11939803 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other upstream 1746323 9814697 ~ 9860000 (+)
asb7 asb7,LOC102792420 other upstream 1929296 9653578 ~ 9677027 (+)
adamts17 adamts17 other upstream 2001861 9391108 ~ 9604462 (+)
cers3a cers3,LOC102798777 other upstream 2227712 9333229 ~ 9378611 (+)
G26236 NA other upstream 2450980 9068729 ~ 9155343 (+)
lto1 oraov1 other downstream 293955 11903272 ~ 11912722 (+)
G27086 NA other downstream 1500440 13109757 ~ 13110339 (+)
LOC120556202 NA other downstream 1625918 13235235 ~ 13237819 (+)
slc35c1 slc35c1 other downstream 2062160 13671477 ~ 13676613 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other downstream 2200618 13809935 ~ 13856423 (+)

Expression


Co-expression Network