lto1 (oraov1)


Basic Information

Item Value
gene id lto1
gene name oraov1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11903272 ~ 11912722 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU35883
AGCggttagcagtcagcattttagcttACATCTGTGTTGATTAATGCATCTGGCGCATAGGGCTGTAAATACTGTGAAAACTGTTTTTACAGAATAATATTGTAAGTTAAGTGGAGATGGCTGGCGGCTCTGAAAATGAAGATCTATTTGACACTATTCTTCTAGCGGATGAAAGGTTCCGAGGGGAGGGCTACCGGGAGGGATTTGATAAAGGGACTCGCCGAGGACTGCAGGACGGTCGCAGACATGGTGCCGCTCATGGGGCAAAGCTCTCCACTGAGGTCTGCTCTATGCTGAGTGTCCCGGCTGACTTCAACGATTACATCAAAACTTGTGAAGGGACTTCTTTCTGAACCCAGgctgatgaggaggaggtgctgaGACCACTCTACGTCCTGGACAGAAGACAGCGAAGTCCTGTCCTGGGCTTGGTCTGCAGTGGATTAATTTCAGGGTCTGCAGTGTGAAGAAGGGACTGCACCAGTTTGACAGTCCTCTTTGAGATTAGTCTTTGCCTTCACATTCTGGTGGGAAGGTCTAACTTGTAGGAAAGTCCACGCCCCGCATTTAACTGGAAAATCTCAGGAGACGACTGCAGCCACTGGAATGGAGTACCAGTAAGAAAGAAATGGTTATGTTTCTTGTTTGACTGTGGTAAATGAGTGGATTTATTGCCGTGATGTTGAAGCAACTGAATTGAAATCGAACAAAGACACAACAGAAGCAAAAGACGCCAAAATAAAATCTTGG
>XM_039795938.1
CCCTCCAGACAGCCAGGGAGCAGCACTGCTCTGATGGCGGAGGAAGCAGTTCCGTCTGCCTGCTGGAAATTGGTAGAATCCATACAGTAAGCAGTTTGTAGCggttagcagtcagcattttagcttACATCTGTGTTGATTAATGCATCTGGCGCATAGGGCTGTAAATACTGTGAAAACTGTTTTTACAGAATAATATTGTAAGTTAAGTGGAGATGGCTGGCGGCTCTGAAAATGAAGATCTATTTGACACTATTCTTCTAGCGGATGAAAGGTTCCGAGGGGAGGGCTACCGGGAGGGATTTGATAAAGGGACTCGCCGAGGACTGCAGGACGGTCGCAGACATGGTGCCGCTCATGGGGCAAAGCTCTCCACTGAGATTTCCTTCTATTATGGGTTTGCCATCACATGGAAATGTCTCCTCCAACATAATACAGATGTCAAATCAGGGAAGCGTATGAAAGCACTGGAGACTCTCCTGGGTTTGATCCAAAACTCCCCTCATGATGATCCGCAGTCTGAAAAGCTACAGGAGCACATGGAAAGACTTCGTGCCAAGTTCAGACAGGTCTGCTCTATGCTGAGTGTCCCGGCTGACTTCAACGATTACATCAAAACTTGTGAAGGGACTTCTTTCTGAACCCAGgctgatgaggaggaggtgctgaGACCACTCTACGTCCTGGACAGAAGACAGCGAAGTCCTGTCCTGGGCTTGGTCTGCAGTGGATTAATTTCAGGGTCTGCAGTGTGAAGAAGGGACTGCACCAGTTTGACAGTCCTCTTTGAGATTAGTCTTTGCCTTCACATTCTGGTGGGAAGGTCTAACTTGTAGGAAAGTCCACGCCCCGCATTTAACTGGAAAATCTCAGGAGACGACTGCAGCCACTGGAATGGAGTACCAGTAAGAAAGAAATGGTTATGTTTCTTGTTTGACTGTGGTAAATGAGTGGATTTATTGCCGTGATGTTGAAGCAACTGAATTGAAATCGAACAAAGACACAACAGAAGCAAAAGACGCCAAAATAAAATCTTGGAACATAA

Function

NR:

description
oral cancer-overexpressed protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35883 False 750 lncRNA 0.47 3 11903371 11912715
XM_039795938.1 True 1045 mRNA 0.47 5 11903272 11912722

Neighbor

gene id symbol gene type direction distance location
minar1 kiaa1024,LOC107562943,LOC102799073 coding upstream 764874 10934633 ~ 11138398 (+)
LOC120555826 NA coding upstream 771800 11129921 ~ 11131472 (+)
shcbp1 shcbp1,LOC104947898,LOC104967817 coding upstream 1063123 10789845 ~ 10840149 (+)
LOC120555949 NA coding upstream 1157946 10741710 ~ 10745326 (+)
LOC120555948 LOC103462314 coding upstream 1294191 10527838 ~ 10609081 (+)
LOC120556595 NA coding downstream 118899 12031621 ~ 12031728 (+)
LOC120555527 NA coding downstream 643325 12556047 ~ 12562553 (+)
LOC120556313 LOC104939823,LOC100707594,LOC101479997,LOC105924362 coding downstream 1153230 13065952 ~ 13071332 (+)
LOC120556474 NA coding downstream 1176813 13089535 ~ 13091435 (+)
si:cabz01068815.1 NA coding downstream 1231785 13144507 ~ 13176403 (+)
G26878 NA non-coding upstream 91330 11811683 ~ 11811942 (+)
G26861 NA non-coding upstream 137305 11765667 ~ 11765967 (+)
LOC120556208 NA non-coding upstream 174976 11725618 ~ 11728296 (+)
G26817 vps35,LOC102795814 non-coding upstream 287596 11610759 ~ 11615676 (+)
G26816 vps35 non-coding upstream 293955 11606323 ~ 11609317 (+)
LOC120556354 NA non-coding downstream 26352 11939074 ~ 11939803 (+)
G26890 NA non-coding downstream 47969 11960691 ~ 11961733 (+)
G26893 NA non-coding downstream 50849 11963571 ~ 11963859 (+)
G26903 NA non-coding downstream 202120 12114842 ~ 12115122 (+)
G26911 NA non-coding downstream 292026 12204748 ~ 12205002 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other upstream 2043272 9814697 ~ 9860000 (+)
asb7 asb7,LOC102792420 other upstream 2226245 9653578 ~ 9677027 (+)
adamts17 adamts17 other upstream 2298810 9391108 ~ 9604462 (+)
cers3a cers3,LOC102798777 other upstream 2524661 9333229 ~ 9378611 (+)
G26236 NA other upstream 2747929 9068729 ~ 9155343 (+)
G27086 NA other downstream 1197035 13109757 ~ 13110339 (+)
LOC120556202 NA other downstream 1322513 13235235 ~ 13237819 (+)
slc35c1 slc35c1 other downstream 1758755 13671477 ~ 13676613 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other downstream 1897213 13809935 ~ 13856423 (+)
bbox1 bbox1,LOC102798250 other downstream 2795840 14708562 ~ 14735176 (+)

Expression


Co-expression Network