LOC120555270


Basic Information

Item Value
gene id LOC120555270
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13379030 ~ 13391141 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU36205
TTACTTAAAGAAGAACAATATTCAAAATCACTTGAAAACAGGATTTATTGAGTCAGAAAGTATTGTTTGGCTCAGGACAAGTGAATGTTACTACGGACAACTCTGTATGACAACTGTATGTAATTTGATTGATATCTGCACTAAATATGATGAAACTGTTCAGCTTTCTAAACTGTCTGCATATACACATTCTAACAATCTCTACATCCAAACTGCTGACAGTCAATGCTGGTTTCTTGTAAGCATAACGATCacatcctaaccttaaccacgtGCTTATTATCTTAATCATGACAATGGAGGTCCGCTAACCTTAGTGGAGTCATCATTTAAACccaaaacctaaccaaaccttaaCTATAGCTGTGTAAAAATCAGAAAATGGTTATACAACAGTGTTTATTAACCGTTCAGTCAGACAACTCacgtttgaaatgtttattagaACAGCAGAACATTGTGTTTGGCAGCCAGACTCCGACCTCATCACTCCCCGCAGTATAGGTTTACATGAGATATTGGGGAGTGATGATAAAGAATCTTCCCCCTGGCTACTGCAGGTGGATGCTGGGTTGGTGGTGGGGCTAACAGCGGGCAGCGATACAGGTGCAGGGCAGCAGCGGGATTGACAAAGCAGAGATGGGGAAATTGTGCACCTTAAATATGCCGCCAAATGGTGTGTGTTTGGTAAATGATACG
>XR_005638669.1
gagaggaggaggaggagagaggaagagcaggaaacagacagCTGCACAATCAGTAAGCAGAGGCAGGGTCCATCACAGGGGAAGCTGAGCCAGGGAGCCAAGCTGAGAAAGCACAACCTGCCACATTGACTTAACGGATCAATCCACACCTCGCAGGTGCACCAGATGGGTATCACTTTGACTTTAAAATTCTAGGCTTTATCTGCCAGAGTtggtttatatttgaaaaacaaagcaataattaaatatataatattaaatagataaataaggCAACCTTGATGCAgtatccaagtattcagaaatAACAAGAGGGTGACTATTTCAATTGATGAATCATCCATCCAATGAATAACAAACTCTTGAAGGAAAACATACCCAAAGACATTCACTACTGCCATACTGTTGCCACTTTATCTACACTGTTCACTTCACTTTTTACTTCTTACTTTCACTTCTAACTTTTTTGCTATTTTGTATACTTTGCTCATTTTGGTTTCATTTTTGtatctgtattttttattgtttatttaatttattgtaCTTACATTGTGCACTGCCTAGGAGTTTGACACAACAACATTTTACTATACCTACTTCTGTGTTGTGAGTAAGTATGATATACTGCCTAAACAGCctctcatacatacatgtatatgtGACAAATCTCTTGCACAGGGGATGCACTTTATTAGTAAGTTCTACAGTGATTGCATTTGCTCCTTTACTAGACTGCCCTTCTATACATTTAGTCTAATAGAATAGTAAGTTGTatcaacataaatacatttaaatgaacATTTGTTGTCCTTGATTTTTATATGTTACTTAAAGAAGAACAATATTCAAAATCACTTGAAAACAGGATTTATTGAGTCAGAAAGTATTGTTTGGCTCAGGACAAGTGAATGTTACTACGGACAACTCTGTATGACAACTGTATGTAATTTGATTGATATCTGCACTAAATATGATGAAACTGTTCAGCTTTCTAAACTGTCTGCATATACACATTCTAACAATCTCTACATCCAAACTGCTGACAGTCAATGCTGGTTTCTTGTAAGCATAACGATCacatcctaaccttaaccacgtGCTTATTATCTTAATCATGACAATGGAGGTCCGCTAACCTTAGTGGAGTCATCATTTAAACccaaaacctaaccaaaccttaaCTATAGCTGTGTAAAAATCAGAAAATGGTTATACAACAGTGTTTATTAACCGTTCAGTCAGACAACTCacgtttgaaatgtttattagaACAGCAGAACATTGTGTTTGGCAGCCAGACTCCGACCTCATCACTCCCCGCAGTATAGGTTTACATGAGATATTGGGGAGTGATGATAAAGAATCTTCCCCCTGGCTACTGCAGGTGGATGCTGGGTTGGTGGTGGGGCTAACAGCGGGCAGCGATACAGGTGCAGGGCAGCAGCGGGATTGACAAAGCAGAGATGGGGAAATTGTGCACCTTAAATATGCCGCCAAATGGTGTGTGTTTGGTAAATGATACGGGGAGTGAGGCATGTCACGTGTGTGTACGCAATGCAGCTCGAGTTGGCTGCCTGAACTAGCTCGCAGGCGTTGCCCCATTTTTGAAAGTACTGACAAATGATATTGTTGTGCTGATTAGGGTGTCAGAACAGAAAATGCTTCACTGTGTTGTTCTGAAGGCTAGTTACAAAACTGACCAGATTAATCTGAAACCTAAACTTGAACACTTTGAAGCTTTCAAATACCTAAAATTATGATTTCAACTCATAGTTGCTTTTGATCCTCAGGTGTAGTGAACCACTGGTTTAGAAGTCCAAGGTTTTCTTGCGGCTGAAATCAAGATGCTGTTTTTTAATTTCACCAAATTCTGAACAAATAAAGCCAGCTTTATTTATTCCAGCAATGACTCCTGCAACAACAGTTCTTTGAATTGAATGCTTTTCTAAACTGTCCTCGACCCCTTTACCACATTCATAATTGACAAAGGGACATGGGTGGTCTCTTTACTTGGGtggaaatgtgtttctgtttggTCTTGAACTCATAGTCAAACTGAAGTGCTAGGATACCTTTGGAAACATCCTGTAGGCAGTTATAAACTGCTATTTTGTTACTATTTAGTTCTTCTTTACGTCAGTGAGGTTCCTTGGGAGTGAATCTTTTTAGGTGATATGCAAGGCACATCTTGCCACTGACATATAGGGAATTGGATTTCCCAGCAGAGCCAGGGGCTGCATGTGCTTGACTGCACCCTTCTGGCACCACCCATCACTCTTTTGTAGCTGGAGACCTCCTCTGCCCATCATCCTCTCCTTCTTGCCACTGTATCTGGCCTGATTTTAAAAGATGAAGTTTACCCCGGGGACAGCCCACCCTGCTGGGCAGAAAACGCCTCCCTCTGAGACTGTAAGGAACCACGACTTCTGGTTCCATCTGGTCGAAACCTTTTCTCATTTTCCATGGAGAAGTGGAGCAGCAATACAGATTGCCGTACACTTTAATAGATTGGTTTGAGGAGCATAAAATATGGAACTGTCATTTGATTGCTTCTAATTTGTTCTTGGTTTCTCATTTCTCACTTGTAATTCGTTTCACTCCAGTTACACTGTCATCCCTTTCCTCAATCTGTTCTTCTTATTTTTCAAAGTATGAACTCGACATCacgttttccttttttaatcaTAACtgtatcactctctctctctcttttttctcactcactctctcagtTGTGGTAATAATTCATCTTTTTATGCTTTTTAGACTGTGGATTGTAAGGCTCATGCTGTGCCAAACAGCAGTGCAAttggagagggaaataaaaataGCTTAGCATGTCAGCAGGGGTTTATGATGGCCTCTTTTCCTCAGAGAACTCATATTACGTCCTACCCACATCTTATACACCAGACTAATGCAGCAAAGCCTGCAAAGCTAGTTCAGGATGACAACTTAAGTCATACCAAGTAGATGTTGTTTCAGCATATTGAAAACATTTCTCTCTGTGAGTGTTTCAACCTTCTCGGTACAGCTTGCTATAAAGGCTTCACCCTATTCCTTCATTCAAAAAAGACAATAGCACATAGCTCTACAGTATGCAGCTACATATATTGATGTTAGTCAGATCACAGCCATTTTGGTGTTTCCTCTGGTACAGTACATGCAAACCATGGTAAGCTCCAGTCCAGCCCAGACAATGGTGGTAATGTCCCCCCATCCTTACCTAGAAAACAACCATATGGGTCGATTATGCAACTAGCTGACAATTATTTTCTAGTTAGGCTTTGACCTCTCGTAGCTGAGGGagaggtgacaaagtataagacaAAATCCCATGTTAAACActtggggtggtggatgagtcaaacaaacacaggactttccctAAAGAGACTGGGGTTCATGtcctgtgtgaaaccaaaagtcagcTGTCATTTTGAAATGACCTTAGTCCAGGATGCGATGACATACGTTACGTCACATTACGTCCTCATGTACGTAGTTTTTtgtgaccctaaccctaaccctcataTTAAGACATCCCCTGATGTTTTACTAACACTAACTATTTGGTTGCCTAAACATAACTAGTTCCGTTTCACATTTAcgatgtgtttaaaaaaagtgccCACTACGTTTAAAAGAAAAGTCACATGTTTACAGTTACATGATTAAACCGCCACCATGTGGCAGTAAATAGAACGGCCATATGTGTCATTGAAATTGACCTTGATAATgttgtttaggtatgaggatgtgttTGGTAATGCACCTGAAGCTGCCAAAATCATCAGAGGAAGAAGAATAATGTTTGCTCTTTAACCgtttatttacatttcagctagctagctaactatccataaactaacacaaacacatcagcCATTCGTATAGATGAACTACAAGCGAAAACACATTAATATTACGTTTTATCGTCTTTACTGGCACTCACTAATGCCAGTCCCTCACACATAGCCTACAGACCAGGGCTCTCTGACTCAAACACATTATACTGTGGTTGCACAAATCAAAGATCAGATTAACACAGCAAGTGTAGAACTCTCGGACACCTTTTTATCCCTGTTGCTTTAATGACAAAGGGAGAATAATCTGATTTCAGTGTAATTTCAATGTTACATTAACAGCAGTTTTTAAGGGTCTGTTATCAAGGGATAGATCCTGTAAGTGACTCTGTCCAAAGCACACTTACTGCCATAGTTACACTTCAGATGAGTAAAGAAAGAAATCACAAATCATAATTTAAACCATACGGCTACATTGTATCGAGGTGGTCACTCAAAACATTTCTCTCTGGGCCAAAAGTTTAGGTAGATTGTCATCTCTTTAAGCTGTAACTTGTTCCAGCACAACATCATGTAATGAAGAGGGTCACCCTGTTTGGCTTCAATATAATGTTTTGCCACAGAAACAGATTAGCATGGGAATTACTTTTGTACACAATTGTATTATGCCATTATGCATTGTGCCATACTGTAAGTGGTTGTTGTGTATTTAGTTGGATGGACCAACTAATCACTTGGATTTAATAATGACTTTTCATTTAAAGCTCTTCCTCCAGGCTGCTTTAGAGTCATACACCCAACCATAACCATATTCAGAGTGCAAGGTAAGCTTGAGGGAGCCCATTACGAGATTAAACCAAGTATTTTCCTAATAGGGCCTTaaactttgttttctttgtgtgcCTACATTTGAACTTTGTGTACAGAGTTGGTTCTTTaagatgttgtgtttttagaATGAGAGTTGATGTTATGTTTGCCTGTATTCTTTTGATAAAAaagtgtgtgctgtgtattaTTGTTCACTGCAGTAACAGAAGCTGGCACCTCTCCTCCACACCTGGGGATGCGTATTCTCTCTAAAGGGAGGAGGATAGGATAGGATATTGTGGTGCTTTGATGAAGGCTTTTGTCGAAAAGCAtgggtataaaaaaataaaatggtaaCCTGA

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU36205 False 699 lncRNA 0.41 1 13382485 13383183
XR_005638669.1 True 4978 lncRNA 0.39 3 13379030 13391141

Neighbor

gene id symbol gene type direction distance location
LOC120555522 NA coding downstream 84769 13285241 ~ 13294261 (-)
LOC120556590 NA coding downstream 89766 13289210 ~ 13289264 (-)
pdcd7 NA coding downstream 130614 13240686 ~ 13248416 (-)
ubap1lb ubap1l,LOC107685210,LOC106932412,LOC103156499,LOC105938593 coding downstream 140778 13208329 ~ 13238252 (-)
rasl12 NA coding downstream 180394 13188414 ~ 13198636 (-)
chst1 chst1 coding upstream 11183 13402324 ~ 13406615 (-)
LOC120555520 NA coding upstream 332452 13723593 ~ 13727470 (-)
hsd17b12b hsd17b12,LOC103367509,LOC108234813,LOC106951467,LOC102212771 coding upstream 576573 13967714 ~ 13995315 (-)
ttc17 ttc17,LOC103361721 coding upstream 626411 14017552 ~ 14048294 (-)
trpm5 trpm5 coding upstream 670895 14062036 ~ 14090460 (-)
G27135 NA non-coding downstream 128890 13249904 ~ 13250140 (-)
G27133 NA non-coding downstream 129867 13248744 ~ 13249163 (-)
G27108 NA non-coding downstream 207600 13170457 ~ 13171430 (-)
G27063 NA non-coding downstream 354945 13023855 ~ 13024085 (-)
G27062 NA non-coding downstream 355405 13023199 ~ 13023625 (-)
G27178 NA non-coding upstream 7862 13399003 ~ 13399374 (-)
G27189 NA non-coding upstream 229422 13620563 ~ 13620851 (-)
G27196 NA non-coding upstream 284831 13675972 ~ 13676503 (-)
G27204 NA non-coding upstream 296700 13687841 ~ 13688228 (-)
G27205 NA non-coding upstream 298141 13689282 ~ 13689597 (-)
G27075 LOC104939823,LOC100707594 other downstream 283264 13069996 ~ 13095766 (-)
G26924 LOC108281047 other downstream 1074206 12304539 ~ 12304824 (-)
G26891 NA other downstream 1417258 11960701 ~ 11961772 (-)
LOC120555651 NA other downstream 1709761 11643231 ~ 11669269 (-)
mtfmt mtfmt,LOC102776665,LOC102776373 other downstream 1868730 11476506 ~ 11510300 (-)
G27321 NA other upstream 1078617 14469758 ~ 14470345 (-)
LOC120556476 NA other upstream 1186886 14578027 ~ 14580011 (-)
G27420 NA other upstream 1451572 14842713 ~ 14843905 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other upstream 1659521 15050662 ~ 15078830 (-)
LOC120556162 znf609 other upstream 2680428 16071569 ~ 16159882 (-)

Expression


Co-expression Network