slc35c1 (slc35c1)


Basic Information

Item Value
gene id slc35c1
gene name slc35c1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13671477 ~ 13676613 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU36229
tTCACATGCATTTGGGGCAGTGTAACAATTCTTTTAAAATGAGATGACTAAGTAATATAATAATGTGTCTTTTATGGTCCAGTCTACATGTCTAAgtgaagaaaacaaaatcatgtttttattcataGGCAGGGTTTTTCCAACATAGAGACATTTTTGGCGCCCCTCCTCCCCAAAGAGGTTTCAGCCAGAtccaaaggaaaatcaccagcacAAAAACATCGGGAGGAGTAGACGCTGCTGATATAGTGGCATCAGTATTGAATTGAGACATATTTATAACTGGATAtggttgggtttttttttcaagagGACTTGGGCACCCACCAACTCTGCCCGGGTACAGTACGAAGTGTTCAAACTTTTGGCATCAAGTGAACTCGGATATGGGCCCAGATCCCTGATGTAAAATAACCCTTATTACATTATATTCCAttgtatttcattatattttgaattgtcacctGCCTCCtgagttttgtgttttccttttaGATACATAAAGACGgttccaccataaattggtgcatacaaATGTATCAGAAtccaggaaatgaagtgtttggtGCTCAATATTTGCTGGGGAGGACCCTCAGACCCCAGCTTGATATgtgtacccccccccccaccccccctcctcctcaaaggaccattctgagc
>XM_039795668.1
TCGTATTGTTATTGCCGTAGGCGGAACACAGTCGTCATGTTTGTATCGTATAGGTAGCATCACTGCTGGtctgtagctagctacataTTAGCTCATGTAAATGCTGCGGTTTTTTTTACCCAGGCTGCTCTTCTTTCTCTGTAATCATGAACAGGACACAGCTGAAGCGGTCCAGTATATTGAGGATGGCTCTAGCCGGTTCGGAAACAATGGACGGACATGGAGAGACTTTCATATTCCGTGCTGTCAGAATAGGTGCTGTGGTTGCACTGTACTGGTTCATTTCAATAACTATGGTGTTCCTTAATAATTACCTGCTGGACAACCGAGACCTGGACGCGCCGTTATTTGTTACTTTCTATCAGTGTTTGGTGACTGTCGGACTGTGCTGGCTCATGCAGCTGCTGTCCAAGTTGTGCCCGGGACTCATCGACTTCCCCTCGGTCAAACTCGACGTGAAGACGTCACGAGAGGTCCTGCCGCTGTCCATTGTGTTCATTGCCATGATCACCTTCAACAACCTGTGCCTGAAACATGTCGGTGTGGCTTTCTACACGGTCGGTCGTTCACTCAGCACAGTGTTTAATGTGCTGTTATCGTACGTTATCCTAAAACAAACCACGTCATACCAAGCCATACTGTGCTGTGGGATCATTCTAGGTGGATTCTGGCTTGGTGTGGACCAGGAAGGCGTGGCAGGGTCCCTCTCCTGGTCAGGTGTCTTCTTTGGGGTGGTGGCCAGCGCTTGTGTCTCTCTAAACGCCATCTACACCAAGAAGGTGATGCCAGCGGTGGACGGCAACATCTGGAAACTCTCCTACTACAACAACATTAATGCCTGCGTCCTCTTCCTCCCACTCATTCTCGTGTTTGGAGAGTTGGGCAATCTCGCCCACTTCAGCCTCCTGACTGACGTCAGGTTTTGGGGCATGATGACGCTCGGAGGAGTGTTTGGTTTCGCCATTGGCTACGTCACAGGCCTCCAGATCAAGTATACCAGTCCACTCACGCACAACGTCTCGGGGACAGCAAAGGCCTGTGCGCAGACTGTTATCGCGGTTGTGTACAACTCTTCCAGTAAAAGCCTGCTGTGGTGGACCAGTAACCTGTTGGTTCTTTGTGGCTCGTCAGCCTACACTTGGGTCAAAAGTCTAGAAATGAAGAAGCCTTCTCCTCACAGAGACCCTCCGGACTCAGCCAAGGAAAAACTGCTGCCAGGGGAAAAAGGCAGCTTGGGAGTGTAACGGTTGTAACTAGGCTGagaaactttctttttttttttttatacgtgGGGTGAGAGTATGaaataatgtaatatttagGACATGACTGATTAATGTTTGAGGTGATTATGCACACATGGAATCAGTGATTTTGGTTAGGTTTAATAGTCTTTGGGTTTTATACAGTTGCACTTGAAGCCTGAAgaaatttttatatatatatatatatatatatataattttttttttttatttaaagctatTCACATGCATTTGGGGCAGTGTAACAATTCTTTTAAAATGAGATGACTAAGTAATATAATAATGTGTCTTTTATGGTCCAGTCTACATGTCTAAgtgaagaaaacaaaatcatgtttttattcataGGCAGGGTTTTTCCAACATAGAGACATTTTTGGCGCCCCTCCTCCCCAAAGAGGTTTCAGCCAGAtccaaaggaaaatcaccagcacAAAAACATCGGGAGGAGTAGACGCTGCTGATATAGTGGCATCAGTATTGAATTGAGACATATTTATAACTGGATAtggttgggtttttttttcaagagGACTTGGGCACCCACCAACTCTGCCCGGGTACAGTACGAAGTGTTCAAACTTTTGGCATCAAGTGAACTCGGATATGGGCCCAGATCCCTGATGTAAAATAACCCTTATTACATTATATTCCAttgtatttcattatattttgaattgtcacctGC
>XM_039795669.1
AACAGAGGTAAAAAGACAAGACATTTCCTTGTAGACATTCTCCATGCTGGACTCAAATATAGAGCAACCTCCGACAACATAAGGACACAGCTGAAGCGGTCCAGTATATTGAGGATGGCTCTAGCCGGTTCGGAAACAATGGACGGACATGGAGAGACTTTCATATTCCGTGCTGTCAGAATAGGTGCTGTGGTTGCACTGTACTGGTTCATTTCAATAACTATGGTGTTCCTTAATAATTACCTGCTGGACAACCGAGACCTGGACGCGCCGTTATTTGTTACTTTCTATCAGTGTTTGGTGACTGTCGGACTGTGCTGGCTCATGCAGCTGCTGTCCAAGTTGTGCCCGGGACTCATCGACTTCCCCTCGGTCAAACTCGACGTGAAGACGTCACGAGAGGTCCTGCCGCTGTCCATTGTGTTCATTGCCATGATCACCTTCAACAACCTGTGCCTGAAACATGTCGGTGTGGCTTTCTACACGGTCGGTCGTTCACTCAGCACAGTGTTTAATGTGCTGTTATCGTACGTTATCCTAAAACAAACCACGTCATACCAAGCCATACTGTGCTGTGGGATCATTCTAGGTGGATTCTGGCTTGGTGTGGACCAGGAAGGCGTGGCAGGGTCCCTCTCCTGGTCAGGTGTCTTCTTTGGGGTGGTGGCCAGCGCTTGTGTCTCTCTAAACGCCATCTACACCAAGAAGGTGATGCCAGCGGTGGACGGCAACATCTGGAAACTCTCCTACTACAACAACATTAATGCCTGCGTCCTCTTCCTCCCACTCATTCTCGTGTTTGGAGAGTTGGGCAATCTCGCCCACTTCAGCCTCCTGACTGACGTCAGGTTTTGGGGCATGATGACGCTCGGAGGAGTGTTTGGTTTCGCCATTGGCTACGTCACAGGCCTCCAGATCAAGTATACCAGTCCACTCACGCACAACGTCTCGGGGACAGCAAAGGCCTGTGCGCAGACTGTTATCGCGGTTGTGTACAACTCTTCCAGTAAAAGCCTGCTGTGGTGGACCAGTAACCTGTTGGTTCTTTGTGGCTCGTCAGCCTACACTTGGGTCAAAAGTCTAGAAATGAAGAAGCCTTCTCCTCACAGAGACCCTCCGGACTCAGCCAAGGAAAAACTGCTGCCAGGGGAAAAAGGCAGCTTGGGAGTGTAACGGTTGTAACTAGGCTGagaaactttctttttttttttttatacgtgGGGTGAGAGTATGaaataatgtaatatttagGACATGACTGATTAATGTTTGAGGTGATTATGCACACATGGAATCAGTGATTTTGGTTAGGTTTAATAGTCTTTGGGTTTTATACAGTTGCACTTGAAGCCTGAAgaaatttttatatatatatatatatatatatataattttttttttttatttaaagctatTCACATGCATTTGGGGCAGTGTAACAATTCTTTTAAAATGAGATGACTAAGTAATATAATAATGTGTCTTTTATGGTCCAGTCTACATGTCTAAgtgaagaaaacaaaatcatgtttttattcataGGCAGGGTTTTTCCAACATAGAGACATTTTTGGCGCCCCTCCTCCCCAAAGAGGTTTCAGCCAGAtccaaaggaaaatcaccagcacAAAAACATCGGGAGGAGTAGACGCTGCTGATATAGTGGCATCAGTATTGAATTGAGACATATTTATAACTGGATAtggttgggtttttttttcaagagGACTTGGGCACCCACCAACTCTGCCCGGGTACAGTACGAAGTGTTCAAACTTTTGGCATCAAGTGAACTCGGATATGGGCCCAGATCCCTGATGTAAAATAACCCTTATTACATTATATTCCAttgtatttcattatattttgaattgtcacctGC

Function

symbol description
slc35c1 Predicted to enable GDP-fucose transmembrane transporter activity and antiporter activity. Predicted to be involved in GDP-fucose import into Golgi lumen and protein O-linked fucosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIc. Orthologous to human SLC35C1 (solute carrier family 35 member C1).

NR:

description
PREDICTED: GDP-fucose transporter 1

GO: NA

KEGG:

id description
K15279 SLC35C1, FUCT1; solute carrier family 35 (GDP-fucose transporter), member C1

RNA

RNA id representative length rna type GC content exon number start site end site
TU36229 False 660 lncRNA 0.42 1 13675954 13676613
XM_039795668.1 True 1953 mRNA 0.45 2 13672466 13676421
XM_039795669.1 False 1882 mRNA 0.45 3 13671477 13676421

Neighbor

gene id symbol gene type direction distance location
spg21 spg21,LOC102788283 coding upstream 400259 13252165 ~ 13271218 (+)
kbtbd13 NA coding upstream 463142 13204839 ~ 13208335 (+)
si:cabz01068815.1 NA coding upstream 495074 13144507 ~ 13176403 (+)
LOC120556474 NA coding upstream 580042 13089535 ~ 13091435 (+)
LOC120556313 LOC104939823,LOC100707594,LOC101479997,LOC105924362 coding upstream 600145 13065952 ~ 13071332 (+)
si:ch211-102l7.3 LOC102292170 coding downstream 1519 13678132 ~ 13696767 (+)
slc1a2a LOC104925837,LOC100698156,LOC102211357,LOC103366006,LOC104946114,LOC101471102 coding downstream 21033 13697646 ~ 13723065 (+)
LOC120556255 apip,LOC102794906 coding downstream 73803 13750416 ~ 13765627 (+)
traf6 LOC103361723 coding downstream 371678 14048291 ~ 14055494 (+)
cdkn1ca NA coding downstream 416251 14092864 ~ 14094321 (+)
G27190 NA non-coding upstream 19982 13650883 ~ 13651495 (+)
G27179 NA non-coding upstream 253323 13417937 ~ 13418154 (+)
G27164 NA non-coding upstream 269542 13401726 ~ 13401935 (+)
G27163 NA non-coding upstream 280113 13391156 ~ 13391364 (+)
G27161 NA non-coding upstream 290197 13379046 ~ 13381280 (+)
G27220 NA non-coding downstream 60570 13737183 ~ 13744451 (+)
G27241 NA non-coding downstream 251586 13928199 ~ 13936728 (+)
LOC120555409 NA non-coding downstream 320500 13997113 ~ 14001647 (+)
G27306 NA non-coding downstream 546696 14223309 ~ 14224234 (+)
G27320 NA non-coding downstream 789865 14466478 ~ 14466680 (+)
LOC120556202 NA other upstream 433658 13235235 ~ 13237819 (+)
G27086 NA other upstream 561138 13109757 ~ 13110339 (+)
lto1 oraov1 other upstream 1758755 11903272 ~ 11912722 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other upstream 3811477 9814697 ~ 9860000 (+)
asb7 asb7,LOC102792420 other upstream 3994450 9653578 ~ 9677027 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other downstream 133322 13809935 ~ 13856423 (+)
bbox1 bbox1,LOC102798250 other downstream 1031949 14708562 ~ 14735176 (+)
kcna4 kcna4 other downstream 1212777 14889390 ~ 14965062 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other downstream 1371264 15047877 ~ 15053622 (+)
LOC120556433 psma4,psa4,LOC106562664 other downstream 1764842 15441455 ~ 15446492 (+)

Expression


Co-expression Network