LOC120555409


Basic Information

Item Value
gene id LOC120555409
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13997113 ~ 14001647 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU36310
ctgcTGTATAGAAATGGTTAAAAGCATCATTAATATTGAAACATACATAATCTACAAAGGTGAATATACCAGTAAACCCATTCAGTCTTTCTTAAAGTTaggctttctttttttaaatctatgtaTGCACATTTTCAATTAGTCCATAGACATTATGACATATTTGaacaaagaagagaaaagatatgacaaaataagacaaaatcAGATCAAATATAAAATTATGTTATGTTAATTATAACAAATAGGGAGACAAAAAAGCACACATGAAGAGAGGGATTAAAGTGTAAGGTAAAaagtaacagacacacacacacacacacacagtgtgtcttGTCTCACTTTTTCATCTGTTGTTAAATTGAGAAAAAGACCACAAATCAATTATTCAAGGGAAAATGGAGAGTTGAGCTAAATGGCATATTTAAAAGAGTTTTAAATGTTGATCAATTTGCTTTTGGAGCCTAACCACTTATGTGTACCTGGTTGTTTTCCAGTTCAAGATAGTTGAACATTTCCTTCACCTATAGAGCGTGAGAAGAAATGGTCGCAGCTTTTCATTTAGTTCAGTGCATGTCTGGCTGATTAAATGGCTGCTCGGTGTCCATCTGATAACTATACTGCTGTATTTTACAAATAATTGTGAAAACATTCTCTCTTTCTATTGCTCCTTcccttacacacatacacacacacacacacacacacacacacacacacatatatatatacagtatatacacacacagacacacttctgCAAAAGTAACACTATAACATGAATGGGCATTAATTCCCTATACACATCTTTCTCTGTGCGTCTTGCCTTTTAAATAAAGATTGCACACATAGTCATAGCTGTGATACATAACAGTGATACTGTTGTCACAGCAGAAAAAATAAAGGACAAAGTCAAAGAAAAACTAAGAGATGGCACATCCTACAGTAATACATTTAGAAATGTCCATGCAAGGTTTCTTTCTTGTTTAATGTCCCGTCCCAAACACTTCCATCACATTACGTACAGGACATGATTTACACGACAAGGACAAACACAGTATGTcccataatatatataataatgacACATAACAcgtgaaaaagaaaatcacacaaacacacacacacacaaacacacaacttcTTTAGTCCCTGGATCTGAACtctttacatttatatatcatTTTAGTGTTCCTAATATTTCTCTAAAATAGGAATTATATTGGTCAAATATGTAAAGACTTTTTAAATGTGGTTGTCTTTCACTGTAGACATCACATCATCTTTCCACTATTGCTGCATTTTTTATCAAGTTATTGTCACCAACCCCACACCTCTCAAAACAGAGAACTGTACAGAAACAGACTGTTcggaccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaactgtaagTACTTCTCCTTCAAGCAGGTGAGCTGATTAAAAAAGCTGTCCTGGAGGGGAAATCACAGGGAGAGGGAGGCTTTAACACATTTGCACTGTACCCGAAGCAGGAGCTCCCTGCTTCGTGAGCTGCTACACTTCTCTACTggagctggggggggggggggcttattGCTCATGGGCGTGAGACCTGAGACCACAGGACCCTAGGTTTGGGGCCCCTGAGCCAGATCTCCTGTGTGAAGTGACTCTCATAAAAATATTTCACATCGCAAATTTTAAAGGATCAGTTATTGAAGTCAGATTACAAAAACAAAGCACATTTGTAAAACCAAAGGAAAAGCTTAAACATTCACAAGGAAGTATCATTCATCACCTTAGGCTTTTCTGAAGGACGTTCAGGTCTAGTGAACTATTTGAACTGAGTACTTTTTCAACTGCGTGGAGATTTTGACTGAACAACCGATTTTCACATGGCAGTCAAAGTTGCTAAGCGTGCTGCCAGTGTTCGCACATTGAAGTATTATGAATGATTTTCAACACAATGTGTGATTAACACTTTCTACTTGTTTTAGTGTGtgtaaatgggtgaatgagaggcagattgtaaagcgctttgtctataaatgcagtccatttgcCATTTACAGTAGTACTgaactagcctggtcctaccagactctgctacatttcatttgtacagagaatctgtccactctccattgacaagggTTAACTTCCTTGagggcgggtactctgttgaagtttaaaactattggatctgccaagagccactctggatctgccataaccaatcgctaacaaTCGCATGACAAtcgtatgtcatgcgcatgtgcaacaagaggggagaccgacaactatcggcttatatttagcattagcatcgctagtgttagccttagccaactccttcaccactaacagagCGAGCTGGAcaatctaacttttcccgaacccccgTGGGGAGAaggggccacaacatcatgtccaccaacaaaactcagcaaagattgttcttgctcgggcttttgCTTCTGGATGTTCGGCAGCGTTgctgccacaacggaccgaatggcttcgctcgcatctttctagcgCACGTCTTCAACTTCGTCgatctcagccactccctctgttcgctgattggactgcCAAATATTTGAAaaccggagaaaacccaagaatataccgcaaacccagacggagtactgaagggaaatgaaaattgagcggaagtacgtaggagggcggagtgAGTTTTCCCCACTCACTCGGTGGATTCATCCTGCGGCCCCCACTTTGGTTTGGTCAGTGCTCCCGTCTCCCGGCGTAGTGTGTGCGTGATGTGTAGACGGCCTGCGAGTTCAAAAGccataaacaaaaacaataaagataatatgAGAAAGCGGAAGCAAATATATCGTCCATATTGCTTACAACCGTTCCTGATCCAGAAGGGAAAGTGATGTGACATTGGCATACATTACATTGTGAGTTAAATGGGAAAATGTACCGCAAAATGAAGAAGACACTCAAAACATTGAGAAcatccatatatacagtagtatGCTTCGAATGTGATAAAATAGGAATTCTTGCGCTTTTGAATTTGCATTTTGTTGACTGTTGATTAGGTTCACAAAAGCATACAGaggtgtatttaaaaaaaaaaagccaaatatttaaattacaagaaaatttgaaaaacatGTAAGTGCACCTCAGGTTTCTGCAGTGGTGATTTGTAGTACATCATGTGTTTGTATGACATCTATGCAGAAACGCCCCAAAATCCTGATTTAAGGTATATTTAAGTAACTTAAAAATGACTGAATCTGTGACATTGTTGAGAAACTGCTTTGAATATAATGCCTTAATAACTATTTCgaataaaagcaacaaaaaaatccCCACAGCTGATTCATCTTCATCTCTGTGACAGCTGTCAGTCTAGCTGTCCCAGATGTTTAGTCAGCAGAAATGTAAGAATCAAAACAACACGTTGCTAAAATAAAAGCTTCACCGTAGAACGTCGCATTTTCATCTGCTCACAAACAAGAagctgtaaaaaataaacatcacaTAAGAAGGCATTAGCAGGCATGTCCAGAGAACAAATTCTGATGAAGATGATGTAATTCTGATGCAAAATAATGACtcaataaaaaactatttttgtttAGTCTAATAATGCATACATTCCTACTGTGTTGTGAAAAATCCTCCACATCTGTTGCTCTTTTAAACATGTTCGTTTATAGCACAACAGAAACCAACGCTGTGCATAATGGTGCATCACAAGTGTAACACCAAACAATCCAGTGGACTGCTGAATGAGTGTACACTGCTGTTGGAGGTAGGAGATGGTGTagtttttgaatttgaatttgtttgttttgca
>XR_005638709.1
cccgaacccccgTGGGGAGAaggggccacaacatcatgtccaccaacaaaactcagcaaagattgttcttgctcgggcttttgCTTCTGGATGTTCGGCAGCGTTgctgccacaacggaccgaatggcttcgctcgcatctttctagcgCACGTCTTCAACTTCGTCgatctcagccactccctctgttcgctgattggactgcCAAATATTTGAAaaccggagaaaacccaagaatataccgcaaacccagacggagtactgaagggaaatgaaaattgagcggaagtacgtaggagggcggagtgAGGCTAGTACTGAGCCTTAATCAGAACAAATGCATTTCCTTATATGGCTGATAATTATTGCGATTCAGGCGCATTCCTAACTTGCACAGTgctgtgtcagcgctggagAAACGTCTGGCTGCATGAGTtgacattctgggataggaggaaaaaaacattgcggcttgtttgaatttctttaaaccaatcacaatcgccttgggcagcgctaagctccagaTGCAGCGAcagtgcccttgcaaaatagatacCGGCGGAGATATAGCGGGGAGGGGAATGCCGACTAAAATATGCAGCCAATGGCAGTCCTTATCCCAACAGTCTACATCCGTTTTCCCCACTCACTCGGTGGATTCATCCTGCGGCCCCCACTTTGGTTTGGTCAGTGCTCCCGTCTCCCGGCGTAGTGTGTGCGTGATGTGTAGACGGCCTGCGAGTTCAAAAGccataaacaaaaacaataaagataatatgAGAAAGCGGAAGCAAATATATCGTCCATATTGCTTACAACCGTTCCTGATCCAGAAGGGAAAGTGATGTGACATTGGCATACATTACATTGTGAGTTAAATGGGAAAATGTACCGCAAAATGAAGAAGACACTCAAAACATTGAGAAcatccatatatacagtagtatGCTTCGAATGTGATAAAATAGGAATTCTTGCGCTTTTGAATTTGCATTTTGTTGACTGTTGATTAGGTTCACAAAAGCATACAGaggtgtatttaaaaaaaaaaagccaaatatttaaattacaagaaaatttgaaaaacatGTAAGTGCACCTCAGGTTTCTGCAGTGGTGATTTGTAGTACATCATGTGTTTGTATGACATCTATGCAGAAACGCCCCAAAATCCTGATTTAAGGTATATTTAAGTAACTTAAAAATGACTGAATCTGTGACATTGTTGAGAAACTGCTTTGAATATAATGCCTTAATAACTATTTCgaataaaagcaacaaaaaaatccCCACAGCTGATTCATCTTCATCTCTGTGACAGCTGTCAGTCTAGCTGTCCCAGATGTTTAGTCAGCAGAAATGTAAGAATCAAAACAACACGTTGCTAAAATAAAAGCTTCACCGTAGAACGTCGCATTTTCATCTGCTCACAAACAAGAagctgtaaaaaataaacatcacaTAAGAAGGCATTAGCAGGCATGTCCAGAGAACAAATTCTGATGAAGATGATGTAATTCTGATGCAAAATAATGACtcaataaaaaactatttttgtttAGTCTAA

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU36310 True 3875 lncRNA 0.39 2 13997113 14001647
XR_005638709.1 False 1569 lncRNA 0.42 2 13999535 14001434

Neighbor

gene id symbol gene type direction distance location
LOC120556255 apip,LOC102794906 coding upstream 231486 13750416 ~ 13765627 (+)
slc1a2a LOC104925837,LOC100698156,LOC102211357,LOC103366006,LOC104946114,LOC101471102 coding upstream 274048 13697646 ~ 13723065 (+)
si:ch211-102l7.3 LOC102292170 coding upstream 300346 13678132 ~ 13696767 (+)
spg21 spg21,LOC102788283 coding upstream 725895 13252165 ~ 13271218 (+)
kbtbd13 NA coding upstream 788778 13204839 ~ 13208335 (+)
traf6 LOC103361723 coding downstream 46644 14048291 ~ 14055494 (+)
cdkn1ca NA coding downstream 91217 14092864 ~ 14094321 (+)
luzp2 luzp2 coding downstream 281512 14283159 ~ 14463293 (+)
fibinb fibin,LOC103373419,LOC106523552 coding downstream 701332 14702979 ~ 14706234 (+)
LOC120555721 arl14ep,LOC102778030,LOC103375558 coding downstream 850638 14852285 ~ 14864789 (+)
G27241 NA non-coding upstream 60385 13928199 ~ 13936728 (+)
G27220 NA non-coding upstream 252662 13737183 ~ 13744451 (+)
G27190 NA non-coding upstream 345618 13650883 ~ 13651495 (+)
G27179 NA non-coding upstream 578959 13417937 ~ 13418154 (+)
G27164 NA non-coding upstream 595178 13401726 ~ 13401935 (+)
G27306 NA non-coding downstream 221662 14223309 ~ 14224234 (+)
G27320 NA non-coding downstream 464831 14466478 ~ 14466680 (+)
LOC120556358 NA non-coding downstream 572550 14574197 ~ 14577703 (+)
G27356 NA non-coding downstream 682186 14683833 ~ 14684116 (+)
G27358 NA non-coding downstream 729170 14730817 ~ 14731646 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other upstream 140690 13809935 ~ 13856423 (+)
slc35c1 slc35c1 other upstream 320500 13671477 ~ 13676613 (+)
LOC120556202 NA other upstream 759294 13235235 ~ 13237819 (+)
G27086 NA other upstream 886774 13109757 ~ 13110339 (+)
lto1 oraov1 other upstream 2084391 11903272 ~ 11912722 (+)
bbox1 bbox1,LOC102798250 other downstream 706915 14708562 ~ 14735176 (+)
kcna4 kcna4 other downstream 887743 14889390 ~ 14965062 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other downstream 1046230 15047877 ~ 15053622 (+)
LOC120556433 psma4,psa4,LOC106562664 other downstream 1439808 15441455 ~ 15446492 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other downstream 1473500 15475147 ~ 15486451 (+)

Expression


Co-expression Network