LOC120556358


Basic Information

Item Value
gene id LOC120556358
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14574197 ~ 14577703 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU36395
ttgtaaacgactgtagaattaaataaaatgcagtaagcaatcatttggagcaaattgtcatcactcaaatgtgcgtaagagtgcttttcagtgttcgtagattttgttcttagctaagaacaaatccaagttaagaaaacattagtgaatgccagaatcttcgtaaaaagttcgtaagaagggtttaagaacacatttcttcgtaagaacggttggtgaatgaggcccaatgttcaTAGTAAGTATTATTTCAGAACCACTTCAAAGTGAAAAGCATCGCCCAAGTCACCACCTTCCTCCAAGGGCTCACCGAATTTGAGTGGAAGACATCAAACTAGTACGGACCACCCCACCAGAGCATAAATACTCTTGTCTGGATTGGAGACCCCCAAGCAGATGTGGATCAGCAAGCAGAAGTACCATGGGTTCGGCCCCTCCATCATCCTTCACAAATCTTCTAAAGCTTCTAAACAAGACTGTTCCTCCTTCCCCTCCCCAACCAAATGCCCATCAACTTCAGCTCTGTGGTAAACAACCACACCACATTTTTCATACAAGTTACAGTATCATACTGTACAATGGAACTGCGGTAAGGGCAtcatactgtaaaaaacatgTACACTT
>XR_005638843.1
TGTAACTCAAAGAATATGGTGTTAGGAGTTGAATGTATAGCTACCATGGTTTATGGGGggaaagtaaaatgtatttatttcccTAGCCGCTTAACTTTAAATTTGACCAATCGTTAAACAATTGATTAAAGGACTCTTTTATATGGCTTTAAGTTTTTCTTGACAACATAATGTTGTTAGCTATCTAGCTATATATTATGTCATTAACTTGTAATACATCTGTTATTCTAACAATATAAGAGTTATCTACATCATACTGGTTCCCTGCATACTAAtgcatggcattttttttaatcttgttattgtgttttataaCCCCATGCATGCacttaaaaatatacattttaattatttcatatgtataataacagtcagtgtaaaaaaaaggccatagtaacaCTTGCTCTCGCTCCTGAGATGGTTGACCAATCAGTGATGAGAGTCATCGCTTTGATCTCCTGCCAATCACTCGCGCTCAGACAGAAGAAAGGCACAGACTGCAGCAGCTGCAAAAAGGACCtttctttatcttttctttcCCATTTTCAGACTTGTTGAAGTGATGTGTGTAACGTGAGAACAACCACTTCAAAGTGAAAAGCATCGCCCAAGTCACCACCTTCCTCCAAGGGCTCACCGAATTTGAGTGGAAGACATCAAACTAGTACGGACCACCCCACCAGAGCATAAATACTCTTGTCTGGATTGGAGACCCCCAAGCAGATGTGGATCAGCAAGCAGAAGTACCATGGGTTCGGCCCCTCCATCATCCTTCACAAATCTTCTAAAGCTTCTAAACAAGACTGTTCCTCCTTCCCCTCCCCAACCAAATGCCCATCAACTTCAGCTCTGTGGTAAACAACCACACCACATTTTTCATACAAGTTACAGTATCATACTGTACAATGGAACTGCGGTAAGGGCAtcatactgtaaaaaacatgTACACTTATGGTATTGTAAGGGGGTAGTTACAGTGACTCCGCATATCTACATAACAAGTCTAACAGTGTATTTCATGGTACATTTTAACGtccattttgaatttgatgccagcaagacattttcaaaaaaagtttgGTCATGTTGGGGTAGCACATATTTTATACATCTTCATGCAGTGAAGATAAGGCTGTATGCCTAGTGAAGATGAAATACGCCTCTGTTTAATGGTAGGTTagacagaggaagaaaaaacaatCATTGGAAGACACTTACATTCACTTTCGCAGCTGCTGGAATCTGCATGAGGGGGAGGCATCTGCTTTTCtgtgttgaagaaaaaaattatcaaaatgtAAATTACTTAAAACTCCAACCATTTGCAAAGGTATTTGATCagtcttacaaaaaaaaaaacatcaccatTACTTGGCCTTACTAAAGGCCTTGTGTACCTTTTTc

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04610 Complement and coagulation cascades
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU36395 False 624 lncRNA 0.41 2 14576443 14577250
XR_005638843.1 True 1404 lncRNA 0.38 3 14574197 14577703

Neighbor

gene id symbol gene type direction distance location
luzp2 luzp2 coding upstream 110904 14283159 ~ 14463293 (+)
cdkn1ca NA coding upstream 479876 14092864 ~ 14094321 (+)
traf6 LOC103361723 coding upstream 518703 14048291 ~ 14055494 (+)
LOC120556255 apip,LOC102794906 coding upstream 808570 13750416 ~ 13765627 (+)
slc1a2a LOC104925837,LOC100698156,LOC102211357,LOC103366006,LOC104946114,LOC101471102 coding upstream 851132 13697646 ~ 13723065 (+)
fibinb fibin,LOC103373419,LOC106523552 coding downstream 125276 14702979 ~ 14706234 (+)
LOC120555721 arl14ep,LOC102778030,LOC103375558 coding downstream 274582 14852285 ~ 14864789 (+)
ddb1 ddb1 coding downstream 502091 15079794 ~ 15154115 (+)
taldo1 taldo1,LOC102780893 coding downstream 784496 15362199 ~ 15374072 (+)
LOC120556051 NA coding downstream 796485 15374188 ~ 15392333 (+)
G27320 NA non-coding upstream 107517 14466478 ~ 14466680 (+)
G27306 NA non-coding upstream 349963 14223309 ~ 14224234 (+)
LOC120555409 NA non-coding upstream 572550 13997113 ~ 14001647 (+)
G27241 NA non-coding upstream 637469 13928199 ~ 13936728 (+)
G27220 NA non-coding upstream 829746 13737183 ~ 13744451 (+)
G27356 NA non-coding downstream 106130 14683833 ~ 14684116 (+)
G27358 NA non-coding downstream 153114 14730817 ~ 14731646 (+)
G27432 NA non-coding downstream 379797 14957500 ~ 14957867 (+)
LOC120556117 NA non-coding downstream 422001 14999704 ~ 15000287 (+)
G27449 NA non-coding downstream 438881 15016584 ~ 15017505 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other upstream 717774 13809935 ~ 13856423 (+)
slc35c1 slc35c1 other upstream 897584 13671477 ~ 13676613 (+)
LOC120556202 NA other upstream 1336378 13235235 ~ 13237819 (+)
G27086 NA other upstream 1463858 13109757 ~ 13110339 (+)
lto1 oraov1 other upstream 2661475 11903272 ~ 11912722 (+)
bbox1 bbox1,LOC102798250 other downstream 130859 14708562 ~ 14735176 (+)
kcna4 kcna4 other downstream 311687 14889390 ~ 14965062 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other downstream 470174 15047877 ~ 15053622 (+)
LOC120556433 psma4,psa4,LOC106562664 other downstream 863752 15441455 ~ 15446492 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other downstream 897444 15475147 ~ 15486451 (+)

Expression


Co-expression Network