LOC120556357


Basic Information

Item Value
gene id LOC120556357
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14573451 ~ 14577795 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU36403
AAGGCACAAAAGTGGTGGAAGCCGAggaaaaaattaaaacctgGCTGAAGTACAGTGGAGACCGAaatggaggaagaaaaaaaagagcaacagAAAAAGAAAAGCAGATGCCTCCCCCTCATGCAGATTCCAGCAGCTGCGAAAGTGAATgaaAAGATGCTGCtacttctcctcctctgctccgTCTTCATCATAAGAGCCACACACAATCTAATTTGCTTCAAATCTGCAAAAAACTGCAGAATACAGAAGAGAATCTGCACATTTTCTTAGTTTTCAGCTGGGATTTTTTGGCCTTCTTCCGCATTTTCTTTGCCGCCTTTTTGGTTTCCTTGTTGTTGATTtctttgactttattttttacttatcTTAGCATTTTTCCACTGACTgcct
>XR_005638842.1
AGTGGTGGAAGCCGAggaaaaaattaaaacctgGCTGAAGTACAGTGGAGACCGAaatggaggaagaaaaaaaagagcaacagAAAAAGAAAAGCAGATGCCTCCCCCTCATGCAGATTCCAGCAGCTGCGAAAGTGAATgaaAAGATGCTGCtacttctcctcctctgctccgTCTTCATCATAAGAGCCACACACAATCTAATTTGCTTCAAATCTGCAAAAAACTGCAGAATACAGAAGAGAATCTGCACATTTTCTTAGTTTTCAGCTGGGATTTTTTGGCCTTCTTCCGCATTTTCTTTGCCGCCTTTTTGGTTTCCTTGTTGTTGATTtctttgactttattttttacttatcTTAGCATTTTTCCACTGACTgcctttgtgttgttgtttttttcaactattttgtcAATCGGCTCACATcctgtgttatttatttattatgtgctCAAGTTTTTCCAACAACAGCACCACAAGACGTGAACTGCATTAAATTGTAATGTTAATTTTGTTACCAATAAATAGGTTTATTTTTATAACCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36403 False 393 lncRNA 0.41 3 14573615 14577795
XR_005638842.1 True 547 lncRNA 0.37 3 14573451 14577785

Neighbor

gene id symbol gene type direction distance location
lingo1b LOC103361724 coding downstream 323119 14225777 ~ 14250332 (-)
kcnq1.1 kcnq1,LOC101467915,LOC102292488,LOC102797067,LOC100697082 coding downstream 420003 14101129 ~ 14153448 (-)
trpm5 trpm5 coding downstream 482991 14062036 ~ 14090460 (-)
ttc17 ttc17,LOC103361721 coding downstream 525157 14017552 ~ 14048294 (-)
hsd17b12b hsd17b12,LOC103367509,LOC108234813,LOC106951467,LOC102212771 coding downstream 578136 13967714 ~ 13995315 (-)
muc15 NA coding upstream 61191 14638986 ~ 14654184 (-)
madd madd coding upstream 162397 14740192 ~ 14804767 (-)
nr1h3 nr1h3,LOC102777562 coding upstream 233650 14811445 ~ 14828395 (-)
LOC120556084 NA coding upstream 300227 14878022 ~ 14881139 (-)
LOC120556194 cd151,LOC104922780,LOC103368535 coding upstream 439769 15017564 ~ 15043882 (-)
G27322 NA non-coding downstream 45324 14527842 ~ 14528127 (-)
G27309 NA non-coding downstream 348173 14224336 ~ 14225278 (-)
G27301 NA non-coding downstream 393103 14180127 ~ 14180348 (-)
G27297 NA non-coding downstream 403612 14169613 ~ 14169839 (-)
G27295 NA non-coding downstream 405693 14167557 ~ 14167758 (-)
G27344 NA non-coding upstream 35320 14613115 ~ 14613329 (-)
LOC120556013 NA non-coding upstream 114414 14692209 ~ 14708662 (-)
G27395 fibin,LOC103373419,LOC106523552 non-coding upstream 125264 14703059 ~ 14706216 (-)
G27425 arl14ep,LOC102778030 non-coding upstream 276930 14854725 ~ 14862463 (-)
G27433 NA non-coding upstream 311982 14889777 ~ 14890063 (-)
G27321 NA other downstream 103106 14469758 ~ 14470345 (-)
G27075 LOC104939823,LOC100707594 other downstream 1477685 13069996 ~ 13095766 (-)
G26924 LOC108281047 other downstream 2268627 12304539 ~ 12304824 (-)
G26891 NA other downstream 2611679 11960701 ~ 11961772 (-)
LOC120555651 NA other downstream 2904182 11643231 ~ 11669269 (-)
LOC120556476 NA other upstream 232 14578027 ~ 14580011 (-)
G27420 NA other upstream 264918 14842713 ~ 14843905 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other upstream 472867 15050662 ~ 15078830 (-)
LOC120556162 znf609 other upstream 1493774 16071569 ~ 16159882 (-)
LOC120555730 adamts7 other upstream 1744168 16321963 ~ 16408868 (-)

Expression


Co-expression Network