G27493 (ddb1,LOC102208280,LOC106561926)


Basic Information

Item Value
gene id G27493
gene name ddb1,LOC102208280,LOC106561926
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15149500 ~ 15154115 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU36605
TAAACAGTACTAAAGCAAAGTTTATTAGAATAAACAAGGAAAACATCACAAAGACAAAATAGCTATAAATCTAtcattttaaccattttctttttcacacaGCGTGTTTACTCCAgacttcaataataaacttgaAAAGTGTAAGCCAGTCACATTTAAACTGTGGGGTGTAGAGGATCTTCTTACTGCTTCGATCTGCCTGCAACGGTCACAAATATATCCCAGAGAATGTTTTTGGTGAGGaaaatctctgttttttttgttcttccttTTTATAGTCACACATTATTCCACACGGACGCAATcacacatgcccacacacactccaacaCACTCAGACCAATGTCTTtactttggtctttttttttattttttattgtccaAACAGGATGCTACGCACTTCGCCCAGAGACTCTTGTCTAAATAAAGAATGCTACGCTCATCGTGCAGCACCTTCAGGGCCTCAACGGTTGACAAATCATTGAAGTCTAAAAGGACGAACATGCACAAActgtttatttataattatttacaAATCTGCAAAACCAAAACCCTTCCTCGGCGTTTTTGACCATCGCTGCTCCTCGGGACGCTCCTCTCACTCAGCGGGCGTCCGGATGCCGGTCGGGGTTAGTGGATCCTCGTCAGCTCCTCCACAATCTTAATGACCTCGTCCACTGTGGCTTCACGTTTCATGCCGCTGCCGTCATCGATCTGTAGAGTACTGACGACCTCCTGCATCTTGGCTCGACCCAGATCCAGGAAGCTCTCAATCAGATCCCCGTCGATGAATCCTGTGGCTTGCTCTGTCTTACGCTCCGTGTGGAAGGATCTCCAGAAGCTGTGCTCGATCTTGCCCACGCTCTTGATGACCTTGTTGAGGCGGGTCTGCAGGTCCAGGAGGAGGCTGTACCAGCCCTCGGACAGGGACGTCACCagac

Function

symbol description
ddb1 Predicted to enable DNA binding activity. Acts upstream of or within negative regulation of apoptotic process and regulation of cell cycle process. Predicted to be active in nucleus and site of double-strand break. Is expressed in blastomere; endoderm; nervous system; pharyngeal arch; and somite. Orthologous to human DDB1 (damage specific DNA binding protein 1).

NR:

description
PREDICTED: DNA damage-binding protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36605 True 941 lncRNA 0.46 3 15149500 15154115

Neighbor

gene id symbol gene type direction distance location
LOC120556194 cd151,LOC104922780,LOC103368535 coding downstream 105618 15017564 ~ 15043882 (-)
LOC120556084 NA coding downstream 268361 14878022 ~ 14881139 (-)
nr1h3 nr1h3,LOC102777562 coding downstream 321105 14811445 ~ 14828395 (-)
madd madd coding downstream 344733 14740192 ~ 14804767 (-)
muc15 NA coding downstream 495316 14638986 ~ 14654184 (-)
tspan4a tspan4,LOC102780031,LOC107381782 coding upstream 27605 15181720 ~ 15356059 (-)
LOC120555953 LOC104955210,LOC103368874,LOC100700844,LOC104922787,LOC101483392 coding upstream 264837 15418952 ~ 15427599 (-)
LOC120556362 slc25a44,LOC104955209 coding upstream 279307 15433422 ~ 15437488 (-)
LOC120556400 rps17,LOC100699764,LOC107389132 coding upstream 370229 15524344 ~ 15532010 (-)
csnk1g1 csnk1g1,LOC103370372 coding upstream 382859 15536974 ~ 15578092 (-)
G27450 NA non-coding downstream 132012 15016590 ~ 15017488 (-)
G27441 NA non-coding downstream 195609 14953538 ~ 14953891 (-)
G27440 NA non-coding downstream 196156 14952685 ~ 14953344 (-)
G27438 NA non-coding downstream 199515 14949578 ~ 14949985 (-)
G27433 NA non-coding downstream 259437 14889777 ~ 14890063 (-)
G27497 NA non-coding upstream 26624 15180739 ~ 15181020 (-)
G27499 taldo1 non-coding upstream 207919 15362034 ~ 15374091 (-)
G27545 psa4,psma4,LOC106562664 non-coding upstream 290211 15444326 ~ 15446509 (-)
G27551 rbpms2,LOC107381790,LOC104957780 non-coding upstream 321138 15475253 ~ 15482686 (-)
G27552 NA non-coding upstream 325191 15479306 ~ 15505668 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other downstream 70670 15050662 ~ 15078830 (-)
G27420 NA other downstream 305595 14842713 ~ 14843905 (-)
LOC120556476 NA other downstream 569489 14578027 ~ 14580011 (-)
G27321 NA other downstream 679155 14469758 ~ 14470345 (-)
G27075 LOC104939823,LOC100707594 other downstream 2053734 13069996 ~ 13095766 (-)
LOC120556162 znf609 other upstream 917454 16071569 ~ 16159882 (-)
LOC120555730 adamts7 other upstream 1167848 16321963 ~ 16408868 (-)
LOC120556401 LOC104927750,LOC104949847,LOC103353195 other upstream 2039398 17193513 ~ 17284509 (-)
G27925 LOC103353204,LOC106512954,LOC102223374,LOC104951141 other upstream 2354008 17508123 ~ 17513168 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other upstream 2445635 17599750 ~ 17601390 (-)

Expression


Co-expression Network