G27545 (psa4,psma4,LOC106562664)


Basic Information

Item Value
gene id G27545
gene name psa4,psma4,LOC106562664
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15444326 ~ 15446509 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU36673
TACAGACAACACATCCATCAGTTTCCAAACTTTTAATGTAAAAGACAAAACACTACAGAATTTGGTGACGAGGTGAAGACAATTATTTTTGCTCATTTGTCCTTCTCCTTCTGCTCCTTCTCCTTTTTGTCCTTTTCAGCCTTGGCCTCCTCAGCCTCGTGCCGTTTGATGAGTTCCTCGACTTCTTTCTGCTTCAACACCTTGATTTTTGTTTTCCCGTCTTCTCGAGTCAGGGTGGCAATTTCCACTTTCTCCGCTGAGAGCTTGCTGACATCCATTGTTTTGTTGAGGACTTTGACAGCCAAAGCCAGAGCAGAAGACAGACTCATCTCACCCTCTTTGAAGTCCTGCTTCAACATGGACACTGCAGCAGCGCTGTTGTTGCCAATACACGTTGCCTTCCAGCCTCCATAGTTGCCACTGGGGTCACTCTGGTACAACTGGAAGCCGTAATGTTTGTCCCAGCCCATGTACAGCAGAGAAACACCAAATGGCCTCTTACC

Function

symbol description
psma4 Predicted to enable threonine-type endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMA4 (proteasome 20S subunit alpha 4).

NR:

description
PREDICTED: proteasome subunit alpha type-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36673 True 503 lncRNA 0.47 3 15444326 15446509

Neighbor

gene id symbol gene type direction distance location
LOC120556362 slc25a44,LOC104955209 coding downstream 6838 15433422 ~ 15437488 (-)
LOC120555953 LOC104955210,LOC103368874,LOC100700844,LOC104922787,LOC101483392 coding downstream 16727 15418952 ~ 15427599 (-)
tspan4a tspan4,LOC102780031,LOC107381782 coding downstream 88267 15181720 ~ 15356059 (-)
LOC120556194 cd151,LOC104922780,LOC103368535 coding downstream 400444 15017564 ~ 15043882 (-)
LOC120556084 NA coding downstream 563187 14878022 ~ 14881139 (-)
LOC120556400 rps17,LOC100699764,LOC107389132 coding upstream 77835 15524344 ~ 15532010 (-)
csnk1g1 csnk1g1,LOC103370372 coding upstream 90465 15536974 ~ 15578092 (-)
LOC120555812 snx1,LOC102784823 coding upstream 133531 15580040 ~ 15591856 (-)
neo1a NA coding upstream 153466 15599975 ~ 15787368 (-)
LOC120556584 NA coding upstream 193260 15639769 ~ 15639960 (-)
G27499 taldo1 non-coding downstream 70235 15362034 ~ 15374091 (-)
G27497 NA non-coding downstream 263306 15180739 ~ 15181020 (-)
G27493 ddb1,LOC102208280,LOC106561926 non-coding downstream 290211 15149500 ~ 15154115 (-)
G27450 NA non-coding downstream 426838 15016590 ~ 15017488 (-)
G27441 NA non-coding downstream 490435 14953538 ~ 14953891 (-)
G27551 rbpms2,LOC107381790,LOC104957780 non-coding upstream 28744 15475253 ~ 15482686 (-)
G27552 NA non-coding upstream 32797 15479306 ~ 15505668 (-)
G27554 NA non-coding upstream 36601 15483110 ~ 15486465 (-)
G27582 NA non-coding upstream 87491 15534000 ~ 15535337 (-)
G27587 NA non-coding upstream 100069 15546578 ~ 15546791 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other downstream 365496 15050662 ~ 15078830 (-)
G27420 NA other downstream 600421 14842713 ~ 14843905 (-)
LOC120556476 NA other downstream 864315 14578027 ~ 14580011 (-)
G27321 NA other downstream 973981 14469758 ~ 14470345 (-)
G27075 LOC104939823,LOC100707594 other downstream 2348560 13069996 ~ 13095766 (-)
LOC120556162 znf609 other upstream 625060 16071569 ~ 16159882 (-)
LOC120555730 adamts7 other upstream 875454 16321963 ~ 16408868 (-)
LOC120556401 LOC104927750,LOC104949847,LOC103353195 other upstream 1747004 17193513 ~ 17284509 (-)
G27925 LOC103353204,LOC106512954,LOC102223374,LOC104951141 other upstream 2061614 17508123 ~ 17513168 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other upstream 2153241 17599750 ~ 17601390 (-)

Expression


Co-expression Network