G27565 (rps17,LOC101480409,LOC100699764,LOC107389132)


Basic Information

Item Value
gene id G27565
gene name rps17,LOC101480409,LOC100699764,LOC107389132
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15523974 ~ 15531915 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU36704
CCAGAAATGATTTAACACTCCATAGTTTCCTGCCAAATCAAACTGTCTTCAATTTGGTGCATAAATGTCAGTCTGTATACaattatgaaattatttttttcattacagCCATACCTTCTGTTCCAATTTAAGTTTTAGAAACCTGGGAAGCTGGGACAGTGATTGTGAAAATGTAGTGGGATTCATGACGCTGCTTCGCTGTGGTCTGTCACGGTATTGGGTAACACAGGTAGACTGACCCTATCAGGTGACAACGAGCAAGGTTGGTTGACGCCAGTTTGTGGAAGGCTCATGTAACGACTGTAATGTAtcatttagaaagaaaaaaaaattcacttcCTGggtaaaaagtaaagaaaaataacACTTCTTATTAATAATTATGTCTCTTTATTAGAAGGATTATTACACATGATTTTACAGTCCTCTTGGTGTTTTGAAGTTCATTCCAATAGTTGGCTGAGTGACTTGAAGGTTGGATAGGCCACTGAAATCCAGCATTTTGAGCATTTCCTTTGTGTCTGGATCCACCTCGATGAGCTCCTGGTCCAGTGCAGAAATCTCTGGGACGTAGttgtccctcctctctctctcctcctcctgcagcttGATGGAGATGCCTCGGACTGGGCCGCGCTGAATGCGCTTCATCAGGTGGGTCACATACCCTGCAATTTTGTTGCGCAGAGGCTTGCTGGGGATAATGGCGATCTCCTCGCACACCCTCTTGTTGGTGTGGAAGTCACTGCCCAGGCGTGTGTAGTATTTCTCAATGATGACCCTGGCGGCCTTCTTGACTGTCTTGGTCCTGACTCGCCCCATGTTGACTCGGACCGGTGGAAGAG
>TU36705
CCAGAAATGATTTAACACTCCATAGTTTCCTGCCAAATCAAACTGTCTTCAATTTGGTGCATAAATGTCAGTCTGTATACaattatgaaattatttttttcattacagCCATACCTTCTGTTCCAATTTAAGTTTTAGAAACCTGGGAAGCTGGGACAGTGATTGTGAAAATGTAGTGGGATTCATGACGCTGCTTCGCTGTGGTCTGTCACGGTATTGGGTAACACAGGTAGACTGACCCTATCAGGTGACAACGAGCAAGGTTGGTTGACGCCAGTTTGTGGAAGGCTCATGTAACGACTGTAATGTAtcatttagaaagaaaaaaaaattcacttcCTGggtaaaaagtaaagaaaaataacACTTCTTATTAATAATTATGTCTCTTTATTAGAAGGATTATTACACATGATTTTACAGTCCTCTTGGTGTTTTGAAGTTCATTCCAATAGTTGGCTGAGTGACTTGAAGGTTGGATAGGCCACTGAAATCCAGCATTTTGAGCATTTCCTTTGTGTCTGGATCCACCTCGATGAGCTCCTGGTCCAGTGCAGAAATCTCTGGGACGTAGttgtccctcctctctctctcctcctcctgcagcttGATGGAGATGCCTCGGACTGGGCCGCGCTGAATGCGCTTCATCAGGTGGGTCACATACCTGAGAGACAAACAGGAGCACATGATTATACCAGCATAAGTAAACCGTCAACAACAAAAGACGCTGATTGATCATTTAGAGCTTGCTTGATGCATTACAATTTTGATGATTGCCATTTACTGTAGCAAGGAAAAGATGGTTACGGATTACAAACTGCCAATTCTTTCTTCAGTTACATATAATGAATCGACCACTTAGTTTATTAGCAATTTTAACACATTACTTGGACATTTCTAACAATTCAGTCATAAAAAGCTGCAATATCGAAAACACTAGGGAATTGTTACTAAACTTAATAGCTAATGGTTATTGTGCAACAGCTCTCAAGTTCATTACacacagattaatcgataaatAAATATTGTGACTCACGTTCCCTGAAACAATGAATAAAATAGGAAAAACTTTCTATTAGAATAACCAACCCAATGTATTCAGCATTTTGTAACATCAATTGAAAgcgtaaaaaaactaaacaatcaACCCAGCAATAACCATCACTTTGTGGTGTGCCACAGTTTGAGAGGACAAAAACCGCCAAAACAGATTAATTCAACTAAAGTGCTCTGCCTTCGTTGTTGTCTGCTGAGAAAGCACACGACTGACctcactttaaaggtcccatggcatgaacatttcactttatgaggttttttaacattaatacgCAAACACAACCTAACCTATGGTCCCcctgtggctagaaatggtgataggtgtaaaccgagccctgggtatcctgctctgcttttgagaaaatgaaagctcagatgagccgatctggaatcttctccttatgaggtcataaggagcaaggttacctcccctttctctgctttgcccgcccagagaatttggcccacccatgagaaagagtcatcatggctttcaaaccagcaaagtggcagttggtcaaggccacacccccaccctccaccttaccccctctctcctcctccatagcatttaaagctacagacacagaaatggcacatactaaggaaagctcattgtgggactggctctagtggctataattctgcaccaaggctgaatttcgggaaagagacttcagatacagtattaggggaccactaaggcctatataaaagcatccacaaagcagcatgtcatgggacctttaataaaaacacataaataatGGCAACGCACTAACTGTGATAAAGCAAAACAAGAGGCCAGCACCTCTGTTTCTTCAGGACATAGCTtctcagtaaaaaaaataaaaattcagtTTCAAGAATAACTTAATTAAAAGTGgggtaaaatgtttattttggaTGAACAGCTGCAGGAGACTACAGCAGTACGGTCCTCTGAGTGAAATGTACTGCCTGCTGACTCACTTTGATATTTCTCTGCACTTACTTCCCCAGACTACAATCATTCATTTTCTCTTcattcagtcttcattttgccCTCAACCCTGAAGGCTCCGCAGGCTACAGCAAAGAGAACATCAGTACATTTTGACAGCTGACCTACGAGGACGAATGTCTGGAAAATGTGAGCGATGCATCTGGAGGAGCGATGCATCTGGAGGACTGCAACATCCAGCTGGATGTTGCAGTCCTCCAGAATGGAAACATAGTGATTAAAGGCATGTCTGTATCAACTATTTACACTTTCTAGTGATCTCTCAAACTCCTTAAATAACGAAACTACTCTGGGCCGGAGTGTTCcaagtaaccttaccaaaaaggctcagggtgctggtataatatgaaagcggctggtggatttaaggctcaaaataataatttactattgaatgaatcaaatttaaaCATATTTGTCAGTGGCTGGTTGACGTTCACATTGTTAAAAGTTAATTTCCCATCCTGGCATGGGACACGCATTCACTTACAGTTTGACCAAGTACTAATAGGCCTTTCATTTTTTATTGCACTTACGATAGCGAGAAGTCATCGTCGTACTGTCTCATTTCCTGTTTCTTCTGCATctaccatgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtcgcgGGGAGAACTGAGCAGCTGGGCTTTAGGGTGACAAATCAATCTTTCAGGGTAATTAAGCTATGATCGAGCAACGGCAAGCACCACTGCTTTCTACTGCTGTGACAATCAgacaaatatttaataataaagtCCACCATGAACCAGATCATGAGAGTAACAACATAAACTCTTGCTAAAGGTACTCCAAGACGACAGATATTCCATTATGCAATGCGGTCTCCTCCGTTGACCCTGAACAGCCTGtttaatgctgctgctgctgaagaacCCTTAATGTCACCATTCCATTAGAGGTGAACTTAAAAAGCTGAACCaggctgcaaacacacaaacacaatcactTGGGCTGGACGAATCATGTACTgatagaaataataaaaatcactaataaatggtaaattaaACTTTAGTTAAGTAGTAAACAGTGGTAAACAATGAAAGGATTAATATTTTTACTAATTATAACTaatttaatgctttaatgtaTAACAGTTTATTGTTGCACATATTATTACACATTTGTTAATAATTAGCATATGATTTGTAAACCTTAAGAAATAGTTTGTAAACTgtcaataaacattatttggatggctattATAAAGCAATAAATGCAACTGCTTAGGAGAGCGTTTTGGGCTttgagggactgagaagttgtcgatgttcaaattgttTGGGCTAAGTCccggatcttcccaatcctacctacagcacctctAATGGGgccaaataaatgttttatgatgCTTTATAAACACTTTTTAATTCCCTAATTATTATAAGCATTAGTGGCAACTTAATAGTGGCCATAATGTTGATAGATGGTTTATAAAAACAATGATCAACCattatcaaagtattaactatTTATCTAAATGTATGaactaattattttatattacactAATGAT

Function

symbol description
rps17 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; immature eye; and midbrain. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 4. Orthologous to human RPS17 (ribosomal protein S17).

NR:

description
PREDICTED: 40S ribosomal protein S17

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36704 False 845 lncRNA 0.45 5 15523974 15531915
TU36705 True 3608 lncRNA 0.39 4 15523974 15530314

Neighbor

gene id symbol gene type direction distance location
cpeb1b cpeb1 coding upstream 19524 15490399 ~ 15504450 (+)
LOC120555952 LOC103368873 coding upstream 105199 15393784 ~ 15418775 (+)
LOC120556051 NA coding upstream 131641 15374188 ~ 15392333 (+)
taldo1 taldo1,LOC102780893 coding upstream 149902 15362199 ~ 15374072 (+)
ddb1 ddb1 coding upstream 369859 15079794 ~ 15154115 (+)
senp8 senp8,LOC103374590,LOC103374606 coding downstream 486353 16018268 ~ 16021643 (+)
cln6a cln6,LOC100690854 coding downstream 769866 16301781 ~ 16312679 (+)
calml4a calml4 coding downstream 780808 16312723 ~ 16320946 (+)
LOC120556141 LOC104920616,LOC104955854,LOC103374661,LOC102791325,LOC102298654 coding downstream 879118 16411033 ~ 16412571 (+)
coro2ba coro2b coding downstream 963920 16495835 ~ 16544791 (+)
G27459 NA non-coding upstream 458465 15062219 ~ 15065509 (+)
G27449 NA non-coding upstream 506469 15016584 ~ 15017505 (+)
LOC120556117 NA non-coding upstream 523687 14999704 ~ 15000287 (+)
G27432 NA non-coding upstream 566107 14957500 ~ 14957867 (+)
G27358 NA non-coding upstream 792328 14730817 ~ 14731646 (+)
G27566 NA non-coding downstream 2088 15534003 ~ 15535415 (+)
G27567 NA non-coding downstream 13576 15545491 ~ 15545779 (+)
G27568 NA non-coding downstream 14529 15546444 ~ 15546655 (+)
G27613 NA non-coding downstream 286693 15818608 ~ 15819369 (+)
G27627 NA non-coding downstream 355003 15886918 ~ 15888823 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 37523 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 77482 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 470352 15047877 ~ 15053622 (+)
kcna4 kcna4 other upstream 558912 14889390 ~ 14965062 (+)
bbox1 bbox1,LOC102798250 other upstream 788798 14708562 ~ 14735176 (+)
LOC120555788 NA other downstream 2192630 17724545 ~ 17743448 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other downstream 3029958 18561873 ~ 18575942 (+)
LOC120555697 NA other downstream 3542393 19074308 ~ 19087064 (+)
G28581 NA other downstream 3955331 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 3980441 19512356 ~ 19520218 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G373722 NA misc CI01000176 null 31747 ~ 48881 (-)