LOC120556470


Basic Information

Item Value
gene id LOC120556470
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 16672602 ~ 16681853 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU36934
GTCAGATCATTTTGTTAGTTTGTGCCTGCTGTGTCGCCACGTGTCAGTTTGAATTAGGTTCTTTGCTCCCTGGATTTCCATGGGTCTCAAGTTTCTGGTCACAGCCATCAACTCTTCCATGTGTGCTACCCACTTCCAGATGAAGGCCATGGAACAGGACATGGTAACACGGCGCACTGGCTCCTTGAACACTCCATACCCATTAGCTTTGCCAACTCAGTGGGTGCAGCGCTGCTTTGTGTGGTGGTAAATTTGACTATCATCATCTTCTACAGTCTacctctcctctctgctccaGTCCATCAAGAAAAGAAACATGATAAAGGTCCAAGGAAAGCCTCAGCCAAGGTCTGCCCCTGCTACTAAACCTCAGGCTTCAAGTCACGGCTAAGAGATTCCGGCTGGTTACGAGACATATGGACATGTGAAAAGTGTGCAATATGGGTGATTTTGAAGAACACAGCTATGAGGAACTGACATAATCATAATGTGCAGTCGGCATTAAACTCATGGTGGGTAACGGCCTTCAGACAACACTGGGATTACTGCTATTACAAAAAAGACACAGGAATTTATGACAAgggaaagaaaatgttttgctCTTGAGTTTGCGCTGCCTGCAAAGTAGCTTAAAACTAAAAACTTAAATAATTCAAAGTTCAGTTACTGTTAATGCATGAATACAGAGTAAATGTTTTCAGGTTTGTTTATTTCCCTCCATATGATTGCTGTTTCTGTCCCTGTGACCTGTGAGACATGTCACATTGTTCTTTTGATACAAAACTGAAAGTATTTATGTACATagttattatgatttttttaaataaaccaaCCAAACCTGCCCGCATGTCATTCTTATTCTAAATAGGAACGAATTGTGTAACTTATT
>XR_005638864.1
cttTTGTCTTGTGTCAGATCATTTTGTTAGTTTGTGCCTGCTGTGTCGCCACGTGTCAGTTTGAATTAGGTTCTTTGCTCCCTGGATTTCCATGGGTCTCAAGTTTCTGGTCACAGCCATCAACTCTTCCATGTGTGCTACCCACTTCCAGATGAAGGCCATGGAACAGGACATGGTAACACGGCGCACTGGCTCCTTGAACACTCCATACCCATTAGCTTTGCCAACTCAGTGGGTGCAGCGCTGCTTTGTGTGGTGGTAAATTTGACTATCATCATCTTCTACAGTCTacctctcctctctgctccaGTCCATCAAGAAAAGAAACATGATAAAGGTCCAAGGAAAGCCTCAGCCAAGGTCTGCCCCTGCTACTAAACCTCAGGCTTCAAGTCACGGCTAAGAGATTCCGGCTGGTTACGAGACATATGGACATGTGAAAAGTGTGCAATATGGGTGATTTTGAAGAACACAGCTATGAGGAACTGACATAATCATAATGTGCAGTCGGCATTAAACTCATGGTGGGTAACGGCCTTCAGACAACACTGGGATTACTGCTATTACAAAAAAGACACAGGAATTTATGACAAgggaaagaaaatgttttgctCTTGAGTTTGCGCTGCCTGCAAAGTAGCTTAAAACTAAAAACTTAAATAATTCAAAGTTCAGTTACTGTTAATGCATGAATACAGAGTAAATGTTTTCAGGTTTGTTTATTTCCCTCCATATGATTGCTGTTTCTGTCCCTGTGACCTGTGAGACATGTCACATTGTTCTTTTGATACAAAACTGAAAGTATTTATGTACATagttattatgatttttttaaataaaccaaCCAAACCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36934 True 889 lncRNA 0.41 2 16672614 16681853
XR_005638864.1 False 853 lncRNA 0.42 2 16672602 16681805

Neighbor

gene id symbol gene type direction distance location
paqr5b paqr5 coding upstream 9873 16651817 ~ 16662729 (+)
glceb glce coding upstream 29755 16581385 ~ 16642847 (+)
coro2ba coro2b coding upstream 127811 16495835 ~ 16544791 (+)
LOC120556141 LOC104920616,LOC104955854,LOC103374661,LOC102791325,LOC102298654 coding upstream 260031 16411033 ~ 16412571 (+)
calml4a calml4 coding upstream 351656 16312723 ~ 16320946 (+)
LOC120556405 kif23,LOC104944434 coding downstream 19182 16701035 ~ 16726691 (+)
slc39a1 LOC104951142,LOC103353202,LOC105936366 coding downstream 815567 17497420 ~ 17505106 (+)
rlbp1a LOC104951141,LOC103353204 coding downstream 826252 17508105 ~ 17513164 (+)
LOC120556258 LOC103353205,LOC104951143 coding downstream 852974 17534827 ~ 17548420 (+)
LOC120556259 LOC104951145 coding downstream 868137 17549990 ~ 17556201 (+)
G27711 NA non-coding upstream 266873 16405528 ~ 16405729 (+)
G27710 NA non-coding upstream 288353 16383992 ~ 16384249 (+)
G27709 NA non-coding upstream 298260 16374113 ~ 16374342 (+)
G27708 NA non-coding upstream 320617 16351784 ~ 16351985 (+)
G27706 NA non-coding upstream 333830 16338387 ~ 16338772 (+)
LOC120556471 NA non-coding downstream 17118 16698971 ~ 16700822 (+)
LOC120556216 NA non-coding downstream 48711 16730564 ~ 16807781 (+)
G27810 NA non-coding downstream 190162 16872015 ~ 16949931 (+)
G27819 NA non-coding downstream 284692 16966545 ~ 17026325 (+)
LOC120556428 NA non-coding downstream 388697 17070550 ~ 17077793 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 1186151 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 1226110 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 1618980 15047877 ~ 15053622 (+)
kcna4 kcna4 other upstream 1707540 14889390 ~ 14965062 (+)
bbox1 bbox1,LOC102798250 other upstream 1937426 14708562 ~ 14735176 (+)
LOC120555788 NA other downstream 1042692 17724545 ~ 17743448 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other downstream 1880020 18561873 ~ 18575942 (+)
LOC120555697 NA other downstream 2392455 19074308 ~ 19087064 (+)
G28581 NA other downstream 2805393 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 2830503 19512356 ~ 19520218 (+)

Expression


Co-expression Network