G27877


Basic Information

Item Value
gene id G27877
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17292715 ~ 17294951 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU37093
GCCAACACAGATAATTACAGAAAAGGCCATAATCAGCCAGTAATACCACAGCACTAATATTTCTGCTGAGTCCCATCACTGACTTAATGCTTTATGGTTTAGGcaaaaactggaaaaaataaaaagtcacaagctaaaaagtaaaagaaaaaaaaatatttccactGATACTGCAGATTCATAATTAAAAATCACAGTCAATAAGTACATTGCCAAACTATAAAAGACGTGTCTGAGCTTTTTTTTGGCGCTTACATAACATCTGTTCAGAAATAAGaaaccatttttctttttggtttCATTTGAGTTGCaagaatacatttaatatttgcAGTGTGTTCATCAGTAGCCACTACACACTCTTCTTATTTTACACTTATTTACTAGTTTTGCCAGACTGCTAAGTATTTATAGCTTCAGTTACATTTAAGGCCAACATTATGTAAGGTGGATGTCTCACAGATGTGTTAACAGTACGGTAGAATTTAACAGATGAATATAATTAACAATATATGTGGTATAATGTAAAGTACATATTCTATTCAATGCGCAACTGTTGGAAAATCCATGTTGATGTATTTTCGTTACTGGAACTTTTGAGTTCggcaattattattatatatttattttaatttctttaggATAAGGACAAGTTCTTCCCAAAGTTAAGGTAAAACTATATTTATGTACATCAAAGTTAAAAGGCTGTGGCTCAATTTCAGGTTTCTTAGGCAGGAATAATGGCACTAATAAAATGTGTCGTATGGGAAGGATTATGCAAATAGCGCCTCTGCTGGTTGTGCAGTTCACAAATAATGCGTCTTGGAATGATTGATCACAAACTGTATCTGAACTGCTGTGACACAGAATTAAGGACATTGTAATAATCAGCGTTCATCAACAATAATGAGCTGTTGCATATGGAGAAGgattccataaaaaaaaaaagtttcagtttttcaaaattCACCTCAATATGTTCTGAGCACAACCAGTAGAGGGCGCTACAAGAAGTTTCCCTGGCACATCGGAACCCGTTAAATAACGCCAGATTGTGGTGCTGTGTTCAATTCCTCCTGGGAAACAGTAACCTGACAGACAGActccacttactagcttttgcCCAAACTCTCAAATCCATCTTGTGGTCTTCCTAGTTGACCTTAAATTAAGATTTTCTTTTGTAGCATTTTGTAGCAAAAATGCTAAATGAATAGCCCATCCTGGAAATAAGATGCTTGacaatcaaagtgataaaaaaaacagaccaacTGTGGGCTTGTtcgtgtaaaaaaaatacaggaaaTCTTTAGTTCCCAAATAATTAATGAGACGATGGAGCACGTTTGATTGATCtacaaacaacaaaatgtcTTCTCTGTTTCGGCTGATTTACTGTCAAAAGGCCAGTGATTAAAATTAAGCATCCATGTGTCTCCTCATCGTTACAGAGGATAAAGCACTTTGAACAGTGTACTGAAGAAATGACTCATCATATGTATAATAAACTGGGGATTTAAGCCTTTTGGGTTTTGCTGATGTACTGCCGTTACATTCGTTTCCAGTGATGTTCACACTGTACACATCTAGTCACTGTAGGCTGCGTTTACTGTGCCCTTGTGGAAGAAATGGCATTTAATTGCACTTGAGCTCTACACATTTCAATAGCTGCACATAAAGACCTTGCCAAATCCTTTTCGTCACACAACCCAATATGTTAGCCTCCGTCATGAGAGATAAATTTACCATTCGGGTCGTCGGGGGTCTTTGGTGTCAAGTGCACTGCATTAATGTTTTCCCTCTATAGATATCAACTGATCTTATTTGGCAatctaataaaataacatacTTTCTGTACAGTGCATTACATTTCTTGCTAAAGTTACAATTTACTACTTAGGAAGTGGATAAAACGAAATGTTGAAGAGGAAAGTGGAGCAGTTCTCCACTTTCATTCAgcagctgtttgtttttcttagaATCCATTAAGAATAAACTATGGACAAGAAgagaaatgtaacaaaaaccatatctctttctccccttataaactagggatgcaccgatccgactatTTCAGTCCAAATACCGATACCTAGGCTTTGAGTTTCGGCCGATACCGTGTATAAATCCAATACCTGTGTTTATTAATAAGTATCTATAGTGTATACCTCACTGTGTGGAAGTGAATATGATAATTTTTTGTGTAAGGCAACATCAGGCTTGACTTGAATATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37093 True 2237 lncRNA 0.36 1 17292715 17294951

Neighbor

gene id symbol gene type direction distance location
LOC120556405 kif23,LOC104944434 coding upstream 566024 16701035 ~ 16726691 (+)
paqr5b paqr5 coding upstream 629986 16651817 ~ 16662729 (+)
glceb glce coding upstream 649868 16581385 ~ 16642847 (+)
coro2ba coro2b coding upstream 747924 16495835 ~ 16544791 (+)
LOC120556141 LOC104920616,LOC104955854,LOC103374661,LOC102791325,LOC102298654 coding upstream 880144 16411033 ~ 16412571 (+)
slc39a1 LOC104951142,LOC103353202,LOC105936366 coding downstream 202469 17497420 ~ 17505106 (+)
rlbp1a LOC104951141,LOC103353204 coding downstream 213154 17508105 ~ 17513164 (+)
LOC120556258 LOC103353205,LOC104951143 coding downstream 239876 17534827 ~ 17548420 (+)
LOC120556259 LOC104951145 coding downstream 255039 17549990 ~ 17556201 (+)
mibp2 LOC100693649,LOC103353206,LOC102204817 coding downstream 268780 17563731 ~ 17566207 (+)
G27840 NA non-coding upstream 120244 17172255 ~ 17172471 (+)
LOC120556428 NA non-coding upstream 214922 17070550 ~ 17077793 (+)
G27819 NA non-coding upstream 266390 16966545 ~ 17026325 (+)
G27810 NA non-coding upstream 342784 16872015 ~ 16949931 (+)
LOC120556216 NA non-coding upstream 484934 16730564 ~ 16807781 (+)
G27879 NA non-coding downstream 18937 17313888 ~ 17314090 (+)
G27884 NA non-coding downstream 86428 17381379 ~ 17465644 (+)
G27895 NA non-coding downstream 199797 17494748 ~ 17495773 (+)
G27977 NA non-coding downstream 530913 17825864 ~ 17826910 (+)
G28066 slc24a5,LOC102781271 non-coding downstream 576795 17871746 ~ 17876173 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 1806264 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 1846223 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 2239093 15047877 ~ 15053622 (+)
kcna4 kcna4 other upstream 2327653 14889390 ~ 14965062 (+)
bbox1 bbox1,LOC102798250 other upstream 2557539 14708562 ~ 14735176 (+)
LOC120555788 NA other downstream 429594 17724545 ~ 17743448 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other downstream 1266922 18561873 ~ 18575942 (+)
LOC120555697 NA other downstream 1779357 19074308 ~ 19087064 (+)
G28581 NA other downstream 2192295 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 2217405 19512356 ~ 19520218 (+)

Expression


Co-expression Network