G27925 (LOC103353204,LOC106512954,LOC102223374,LOC104951141)


Basic Information

Item Value
gene id G27925
gene name LOC103353204,LOC106512954,LOC102223374,LOC104951141
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17508123 ~ 17513168 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU37147
tgactgacacaaaaaaaaacaatttaattgaAAATTTCCCAATACAGTGCAAATTGCAGAATGGATCTTTGTGGTAAATCAGGCATCTGAGAGTCACAACTCAAACAAGGCTGTTGAGACAAAGAACTGTTTCCATGACACTGCATCAGAAGGCTCCTAAAACAATTATCAAATGCTGGCTTAGCCGTTATTAGTTTTCCAATCTTCATACCTTTCTAAACCCCTGAGACTGAAACATTTATGTTCTCATTCAACTGACAGGATTGTAGGCACAAAGCTGCTCTGTATGATGTGAAATTCATTTTTAAGGCGAAAAACTCCAAACCAAACTGACTTACATTATCAACTCTCTCATTCTCCCTCCGCTCCTTAAGTAACAATGAATGTTAGCGCTGTAAAGTAACAGACATTAAACATCAATTATTCTCTCTGTAATAGCTAAacatcttttttctttcctattTATATCACCATGTATTTACTCATTGGCAACCCATTCCCTGCTCCTAACTCTAGATACTTCTTTTTGCTCATAGGAACTGCCtgcataataatacaaaatgtcaACCTAGCTTCAAAATAGACCGGATCTGATCACAAAAGAAGCATCTAGGGTGAAGGACACTATAACTCTTGGGTTTGAAATGGGAGGGGCTGTTCTTTCAGAGAGCAGTGTCTTCAGAGCCAAAAAGCTTGGTGGCGATAGCCTGGCAGTCTGCAACAGAGGCTTTCCCATCAAAATCTGCTGGCAGGATGTCTGCGTCGAATTCTTTGAAGTAGTTGTCCAGCTCGTCGCCGTGAACAAAGACCCTCTCCAGCAACTTGCTCTTCATGAAGGGTTTGACCACGTTGTATGTGGTGGTGAAGTACCAGGGCTGGTGAGTAACGTGGACCGCCTTGAAACGCGCAGGGAAAGAGTCCTGCATCATGTCCACCATCTTCTTGAGCTCGGTCGGCTTTATTCCTGAGGCGTGCTGCATGGTGAAGCCCTTGAAATTCTCAATCAGGACAAAGCCATTGATCTGGGTTTCCTCATTCTCCAGCAACTTCTCCAGGATCACACAGTACGCTCTTAAGATCTCATCGAATGTGATCTCCTCCAGGTCCCAGTTCTCGATGTTGAAGAGCAGGACTACGTGGCCATACTTGTCCCTGCTGGGCAGTACCACAGGGTAACCCGCCTCGATGGTGCTGCGGACTGCCTCTGGGGTCAGATTCTCAAACAGCTCGGGATACTCCTTCCTGAAGCGCACATAACCCTTCATGAGCTCGTGGGCTCTGACAACCTCAAACTTGCGAGCTCTGAGGAAACGCAGGATCAGAGAGTCCGGTTTGTCCCCGAAGTGCTCCAGCACCAGTTTGGCCAAATCGTCTCCCTCCGCTGCTCTCTCCTTCATCATGACTCGCAGGTCCTTCAGTGTCGACGCCCGCCTCTCATCTGTCTCACTCAGCTCATCCTTCGCcttttgcaCAGTGTGTCCAGGCAGTTTGTGGCACGGCCCAAACACTGGCCCATGATCCTTCACTGACAAATTCTCCAGCTTAGACCTCATGGCCTGCTCCTCCTCTGACACCATACGGTAAGACCCAATAGCAGCCATGGTTGCAGCGTCTCACAGCAGCTTCACAAAC
>TU37149
tgactgacacaaaaaaaaacaatttaattgaAAATTTCCCAATACAGTGCAAATTGCAGAATGGATCTTTGTGGTAAATCAGGCATCTGAGAGTCACAACTCAAACAAGGCTGTTGAGACAAAGAACTGTTTCCATGACACTGCATCAGAAGGCTCCTAAAACAATTATCAAATGCTGGCTTAGCCGTTATTAGTTTTCCAATCTTCATACCTTTCTAAACCCCTGAGACTGAAACATTTATGTTCTCATTCAACTGACAGGATTGTAGGCACAAAGCTGCTCTGTATGATGTGAAATTCATTTTTAAGGCGAAAAACTCCAAACCAAACTGACTTACATTATCAACTCTCTCATTCTCCCTCCGCTCCTTAAGTAACAATGAATGTTAGCGCTGTAAAGTAACAGACATTAAACATCAATTATTCTCTCTGTAATAGCTAAacatcttttttctttcctattTATATCACCATGTATTTACTCATTGGCAACCCATTCCCTGCTCCTAACTCTAGATACTTCTTTTTGCTCATAGGAACTGCCtgcataataatacaaaatgtcaACCTAGCTTCAAAATAGACCGGATCTGATCACAAAAGAAGCATCTAGGGTGAAGGACACTATAACTCTTGGGTTTGAAATGGGAGGGGCTGTTCTTTCAGAGAGCAGTGTCTTCAGAGCCAAAAAGCTTGGTGGCGATAGCCTGGCAGTCTGCAACAGAGGCTTTCCCATCAAAATCTGCTGGCAGGATGTCTGCGTCGAATTCTTTGAAGTAGTTGTCCAGCTCGTCGCCGTGAACAAAGACCCTCTCCAGCAACTTGCTCTTCATGAAGGGTTTGACCACGTTGTATGTGGTGGTGAAGTACCAGGGCTGGTGAGTAACGTGGACCGCCTTGAAACGCGCAGGGAAAGAGTCCTGCATCATGTCCACCATCTTCTTGAGCTCGGTCGGCTTTATTCCTGAGGCGTGCTGCATGGTGAAGCCCTTGAAATTCTCAATCAGGACAAAGCCATTGATCTGGGTTTCCTCATTCTCCAGCAACTTCTCCAGGATCACACAGTACGCTCTTAAGATCTCATCGAATGTGATCTCCTCCAGGTCCCAGTTCTCGATGTTGAAGAGCAGGACTACGTGGCCATACTTGTCCCTGCTGGGCAGTACCACAGGGTAACCCGCCTCGATGGTGCTGCGGACTGCCTCTGGGGTCAGATTCTCAAACAGCTCGGGATACTCCTTCCTGAAGCGCACATAACCCTTCATGAGCTCGTGGGCTCTGACAACCTCAAACTTGCGAGCTCTGAGGAAACGCAGGATCAGAGAGTCCGGTTTGTCCCCGAAGTGCTCCAGCACCAGTTTGGCCAAATCGTCTCCCTCCGCTGCTCTCTCCTTCATCATGACTCGCAGGTCCTTCAGTGTCGACGCCCGCCTCTCATCTGTCTCACTCAGCTCATCCTTCGCcttttgcaCAGTGTGTCCAGGCAGTTTGTGGCACGGCCCAAACACTGGCCCATGATCCTTCACTGACAAATTCTCCAGCTTAGACCTCATGGCCTGCTCCTCCTCTGACACCATACGGTAAGACCCAATCTGTATAAAGAAGAAAAgcttaataaaaagaaaaccccTAACCCGTAACGATGCACACCAGTGAAGGACTGGTTAATCTGCTTCACGTGATTACAGAAAGGACTTCTAAAGCCACTTCTTAAAAACAGCTTAAGGGTCCATCCCAGGGCCAGCATCTACTGGCACAATAACAGCATCATGCGCTGACAG
>TU37150
tgactgacacaaaaaaaaacaatttaattgaAAATTTCCCAATACAGTGCAAATTGCAGAATGGATCTTTGTGGTAAATCAGGCATCTGAGAGTCACAACTCAAACAAGGCTGTTGAGACAAAGAACTGTTTCCATGACACTGCATCAGAAGGCTCCTAAAACAATTATCAAATGCTGGCTTAGCCGTTATTAGTTTTCCAATCTTCATACCTTTCTAAACCCCTGAGACTGAAACATTTATGTTCTCATTCAACTGACAGGATTGTAGGCACAAAGCTGCTCTGTATGATGTGAAATTCATTTTTAAGGCGAAAAACTCCAAACCAAACTGACTTACATTATCAACTCTCTCATTCTCCCTCCGCTCCTTAAGTAACAATGAATGTTAGCGCTGTAAAGTAACAGACATTAAACATCAATTATTCTCTCTGTAATAGCTAAacatcttttttctttcctattTATATCACCATGTATTTACTCATTGGCAACCCATTCCCTGCTCCTAACTCTAGATACTTCTTTTTGCTCATAGGAACTGCCtgcataataatacaaaatgtcaACCTAGCTTCAAAATAGACCGGATCTGATCACAAAAGAAGCATCTAGGGTGAAGGACACTATAACTCTTGGGTTTGAAATGGGAGGGGCTGTTCTTTCAGAGAGCAGTGTCTTCAGAGCCAAAAAGCTTGGTGGCGATAGCCTGGCAGTCTGCAACAGAGGCTTTCCCATCAAAATCTGCTGGCAGGATGTCTGCGTCGAATTCTTTGAAGTAGTTGTCCAGCTCGTCGCCGTGAACAAAGACCCTCTCCAGCAACTTGCTCTTCATGAAGGGTTTGACCACGTTGTATGTGGTGGTGAAGTACCAGGGCTGGTGAGTAACGTGGACCGCCTTGAAACGCGCAGGGAAAGAGTCCTGCATCATGTCCACCATCTTCTTGAGCTCGGTCGGCTTTATTCCTGAGGCGTGCTGCATGGTGAAGCCCTTGAAATTCTCAATCAGGACAAAGCCATTGATCTGGGTTTCCTCATTCTCCAGCAACTTCTCCAGGATCACACAGTACGCTCTTAAGATCTCATCGAATGTGATCTCCTCCAGGTCCCAGTTCTCGATGTTGAAGAGCAGGACTACGTGGCCATACTTGTCCCTGCTGGGCAGTACCACAGGGTAACCCGCCTCGATGGTGCTGCGGACTGCCTCTGGGGTCAGATTCTCAAACAGCTCGGGATACTCCTTCCTGAAGCGCACATAACCCTTCATGAGCTCGTGGGCTCTGACAACCTCAAACTTGCGAGCTCTGAGGAAACGCAGGATCAGAGAGTCCGGTTTGTCCCCGAAGTGCTCCAGCACCAGTTTGGCCAAATCGTCTCCCTCCGCTGCTCTCTCCTTCATCATGACTCGCAGGTCCTTCAGTGTCGACGCCCGCCTCTCATCTGTCTCACTCAGCTCATCCTTCGCcttttgcaCAGTGTGTCCAGGCAGTTTGTGGCACGGCCCAAACACTGGCCCATGATCCTTCACTGACAAATTCTCCAGCTTAGACCTCATGGCCTGCTCCTCCTCTGACACCATACGGTAAGACCCAATAGCAGCCATGGTTGCAGCGTCTCACAGCAGCTTCACAAACTTTAAGCAGACAGGATGAGAGGAGTAGACGGAGTGGCAGAGAGGACAACAAGAGGAGAGAGGATCAGGAGGGGAGGAGTTAAATGACACAGTGGATTACAATGAGCGG
>TU37151
TAGAAATGTAATAGCATACTAACTACCAACCCTTCATGAGCTCGTGGGCTCTGACAACCTCAAACTTGCGAGCTCTGAGGAAACGCAGGATCAGAGAGTCCGGTTTGTCCCCGAAGTGCTCCAGCACCAGTTTGGCCAAATCGTCTCCCTCCGCTGCTCTCTCCTTCATCATGACTCGCAGGTCCTTCAGTGTCGACGCCCGCCTCTCATCTGTCTCACTCAGCTCATCCTTCGCcttttgcaCAGTGTGTCCAGGCAGTTTGTGGCACGGCCCAAACACTGGCCCATGATCCTTCACTGACAAATTCTCCAGCTTAGACCTCATGGCCTGCTCCTCCTCTGACACCATACGGTAAGACCCAATAGCAGCCATGGTTGCAGCGTCTCACAGCAGCTTCACAAACTTTAAGCAGACAGGATGAGAGGAGTAGACGGAGTGGCAGAGAGGACAACAAGAGGAGAGAGGATCAGGAGGGGAGGAGTTAAATGACACAGTGGATTACAATGAGCGG

Function

NR:

description
PREDICTED: retinaldehyde-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37147 False 1632 TUCP 0.47 7 17509950 17513168
TU37149 True 1781 TUCP 0.46 6 17510128 17513168
TU37150 False 1740 TUCP 0.47 8 17508123 17513168
TU37151 False 512 lncRNA 0.53 4 17508123 17510825

Neighbor

gene id symbol gene type direction distance location
tmem208 tmem208 coding downstream 12345 17492108 ~ 17495778 (-)
smad6a LOC104930524,LOC103353200,LOC104949844,LOC100698095,LOC102202245,LOC101484891 coding downstream 32256 17456560 ~ 17475867 (-)
smad3a LOC104927744,LOC103353199,LOC108237917,LOC105936361 coding downstream 73450 17402752 ~ 17434673 (-)
map2k5 map2k5 coding downstream 137697 17296045 ~ 17370426 (-)
skor1a skor1,LOC102309670,LOC100696486,LOC101486626,LOC102796072 coding downstream 224292 17274978 ~ 17283831 (-)
LOC120555798 abhd2,LOC103353203,LOC102203876 coding upstream 1506 17514674 ~ 17532546 (-)
bloc1s6 bloc1s6,LOC102775909 coding upstream 62270 17575438 ~ 17579320 (-)
spata5l1 spata5l1 coding upstream 88944 17602112 ~ 17608382 (-)
dtwd1 dtwd1 coding upstream 111675 17624843 ~ 17628639 (-)
fgf7 fgf7 coding upstream 132366 17645534 ~ 17651479 (-)
G27909 NA non-coding downstream 213237 17293421 ~ 17294886 (-)
G27865 NA non-coding downstream 386543 17021921 ~ 17121580 (-)
G27775 NA non-coding downstream 865314 16638917 ~ 16642809 (-)
G27768 NA non-coding downstream 949118 16558638 ~ 16559005 (-)
G27767 NA non-coding downstream 949602 16557533 ~ 16558521 (-)
G27983 LOC100693649,LOC103353206,LOC102204817 non-coding upstream 50505 17563673 ~ 17605770 (-)
G27989 NA non-coding upstream 72697 17585865 ~ 17595161 (-)
G27998 secisbp2l non-coding upstream 97135 17610303 ~ 17729544 (-)
G28012 LOC101061426,LOC103379093,LOC106532957 non-coding upstream 110171 17623339 ~ 17624074 (-)
G28025 cops2,LOC107557994,LOC105018362 non-coding upstream 181892 17695060 ~ 17696442 (-)
LOC120556401 LOC104927750,LOC104949847,LOC103353195 other downstream 223614 17193513 ~ 17284509 (-)
LOC120555730 adamts7 other downstream 1099255 16321963 ~ 16408868 (-)
LOC120556162 znf609 other downstream 1348241 16071569 ~ 16159882 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other downstream 2429293 15050662 ~ 15078830 (-)
G27420 NA other downstream 2664218 14842713 ~ 14843905 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other upstream 86582 17599750 ~ 17601390 (-)
G28121 NA other upstream 704954 18218122 ~ 18220550 (-)
G28265 NA other upstream 869537 18382705 ~ 18383642 (-)
G28269 mapk6 other upstream 902901 18416069 ~ 18420499 (-)
LOC120556268 btbd1 other upstream 1136861 18650029 ~ 18658659 (-)

Expression


Co-expression Network