G28163 (usp8,LOC102785891)



Basic Information


Item Value
gene id G28163
gene name usp8,LOC102785891
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18444816 ~ 18445296 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>TU37466
CTTGGTCTCTCTGTTGATGGTGGGTATAACAGCAGCAGTGGTCGGAGCGCTGGCCTTCTTCTGGGCCTCCTCCCTCAGGTCCTGGCTGATATCAGGAGAGGAGTAGGAGCGTTTCAGTTTAGACTGTTCCCGCTCTTGTTCACAGTTGGTGTCTGGCTCAGCTGGTCGTGGGGTTTTCTGTTTAACTGTTGGTGGCGTGGAGGGTGGAGTCTGGGGAACAGTGACCTCAGGAGGGTACAGGTGGACACGGTTGGTTGGGGAATGGTAGTACCGGTAGGTCCCCGTCACCGTGTCAAGGAACTAGCCAAAAATGGAGGGGtgaacCTTCATCCAACCGACTGGAAGGCCAGGTACAC

Function


symbol description
usp8 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within regulation of cilium assembly. Predicted to be active in several cellular components, including dendritic spine; midbody; and postsynaptic density. Predicted to be extrinsic component of endosome membrane and extrinsic component of plasma membrane. Human ortholog(s) of this gene implicated in ACTH-secreting pituitary adenoma. Orthologous to human USP8 (ubiquitin specific peptidase 8).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 8

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU37466 True 356 lncRNA 0.56 2 18444816 18445296
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Neighbor


gene id symbol gene type direction distance location
LOC120555692 LOC104956759 coding upstream 5376 18433272 ~ 18439440 (+)
mapk6 mapk6 coding upstream 25266 18403621 ~ 18419550 (+)
leo1 leo1 coding upstream 64470 18362149 ~ 18380346 (+)
scg3 scg3 coding upstream 123512 18306445 ~ 18321304 (+)
tnfaip8l3 tnfaip8l3 coding upstream 149302 18273688 ~ 18295514 (+)
hdc hdc,LOC106587893,LOC103379072 coding downstream 9360 18454656 ~ 18458552 (+)
gatm gatm,LOC102780634 coding downstream 40766 18486062 ~ 18491068 (+)
pde8a pde8a,LOC100690151,LOC102210709,LOC101463592,LOC102780154 coding downstream 60232 18505528 ~ 18557335 (+)
LOC120555641 whamm,LOC102778540 coding downstream 140477 18585773 ~ 18604970 (+)
LOC120555930 NA coding downstream 193986 18639282 ~ 18642799 (+)
LOC120555993 NA non-coding upstream 263615 18004828 ~ 18181201 (+)
G28083 NA non-coding upstream 525620 17918900 ~ 17919196 (+)
G28065 NA non-coding upstream 555599 17888761 ~ 17889217 (+)
G28066 slc24a5,LOC102781271 non-coding upstream 568643 17871746 ~ 17876173 (+)
G27977 NA non-coding upstream 617906 17825864 ~ 17826910 (+)
G28195 homer2 non-coding downstream 162009 18607305 ~ 18615809 (+)
LOC120556026 NA non-coding downstream 400973 18846269 ~ 18847406 (+)
G28393 NA non-coding downstream 608828 19054124 ~ 19055004 (+)
G28394 NA non-coding downstream 612250 19057546 ~ 19057853 (+)
G28396 NA non-coding downstream 626524 19071820 ~ 19072036 (+)
LOC120555788 NA other upstream 701368 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 2958365 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 2998324 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 3391194 15047877 ~ 15053622 (+)
kcna4 kcna4 other upstream 3479754 14889390 ~ 14965062 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other downstream 116577 18561873 ~ 18575942 (+)
LOC120555697 NA other downstream 629012 19074308 ~ 19087064 (+)
G28581 NA other downstream 1041950 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 1067060 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 1326823 19772119 ~ 19993954 (+)

Expression


G28163(usp8,LOC102785891) Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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G28163(usp8,LOC102785891) Expression in each Bioproject

Bar chart with 4 bars.
G28163(usp8,LOC102785891) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Co-expression Network