G28302 (pde8a,LOC104953025,LOC106596071,LOC108251619,LOC102210709)


Basic Information

Item Value
gene id G28302
gene name pde8a,LOC104953025,LOC106596071,LOC108251619,LOC102210709
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18542458 ~ 18558219 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU37639
attgttttatttttcattgaatAGTTTCTAATTTTTTTCCCGTGCCTTCAGACCAAGATGTGAATCAGAAGGAACAAACAAATCCCCTGATTGCGTGTACAATTCTGTCataagagagaaacaaagataaCTGGGGTCAATACATCTTATTAACCATCATTTGCTTAGCTGTTATGGCATTTATATACTGTTTAACGAGGAAATATTCTTAATAAGCAACAATCTTTAACATATATTAATATCCTAATCTGAAACCAGCCTTAAACAAAAAGCTGTTCCCTGGGTCTGTGCATAAGGATGTTGGACAAGTGGCCAAAATAGAATGATGTTTGATCAAAAATCAATGCAAGCTGGCCTCTAGGAGACTGCTTAAAAACAGTGATAGACAACTCTGCGATCCACATCCTTCTTAACCATTTAGTTCTCTGTATACATGCTCTGTGTGACCTTCCAATTCACAGGTATTCAGATAGCTATAATGGTTGATCTCATTTGCTGCAAATCCAGTGTAAAATTCATTGTCTATAAAAATATTGAGATTTACTTGAACATAACCTTCTGACTATGTTATAATAAAAACTCCAGATGTCCGTTGCAGTTGCACAGTGGGATGTACTGTataaatattgtataaaataagGCAGTCTTTTCAGTAGGATAAACCAGATCCAAAAATGTCTGGGAGAAAAAAATTTCAAGTCCAAAATGTTTTCACATATTTCTGCTGTTGTTAAATGTCAAGCGGTTTACAGCATTAAACCAAGAGTAAGGGATTGTTGCATCAATGAAAACACCCACACATGtccgtgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacgatgatCAACAATAACAGCTTATTCTACAATGCAACATCCCATCCCTGGACAAATCACTGAGACGTAGACATTTCTAATATTGTTTACAGTGCAATACAAAAGTGTTCATTCAAACTGGTACTGTACTTttgataagaaaataaaaatgtttaatatgGTAATGTtttatatgattattttttttgtcttcatcaGCTTtggcttttctctctctttttgaaattaattttgttCTTATTCATCAACTAATTCATTTATGAATTTTAATATAGAAAATATGGAACATCTAAGAAAAATTAACATACCAAATCATCTGTAATTAGTTACCTATGATCATGATGTTGAGGTTTTTGTCTCAGCAGTGGCCTAAAGTAAAGATCCATTCCCTGACCCAAAAAGTAAGCATCCCCCCATGTCTGTTATGACAGTTACGTGTCAACTTGGATGGGTTTTTGAAATACACATGAAaattttgcacaaaaaaaaacaaacaaacaaaaaaatcaaaacaagcAGTGGAGTGTTCTTTCATGGTGTGGCCTCCAGGGGCAGAATGAGCAGTCCTGGCTTGCTGCGAGCACAGGGATGGAGGTCAAAGGTGATTATATGGCCTGACATGGATTGGACAACTTCATATCCAGGCCACACTTCCACCCACTCCTCCAGTGTTGCTCGCTCCTTCAGTAAACAAGCAGTTTTTACTCAAACAGCAACTTCACAGGCAGCGCCCACGTGGTAATTAGGGGACGGATGCTTTGCCAGGAGGCCTGTTAGAACCCTCTCTCAGTCATGTCAGTTGACCAGCTACACTGCGAATGCCTGAGAGGCACGAGAAGTTCATAAGGATGCTGTCCGTGTCTGTTTGTCACAGTTCTCATCTGACAGGGTTGTAAAGCCAGCAATGTTATTGCTGCAACTGTCTGTCAGGAAGTCCTTCTGTGGTTTCTGTATGGACGGACATGTGGACGCTCGGCGTGCTACAGAAGCAAGAGAGTGAAGGCGAGGAGGCCTTTTGGCTGGCTGGCCTGGCAGGGAGAGAGACGCCccagcaggagagaggagggctGCCCTGGACTGCAGAGTCCAAGGGCCAAACACTGCAGCGCCTACTCTGGAGGCGGTCGCAGGCTGTGCAGCTTCCTCTCATCCAGGCCTTTCCAGTACTTGAAGTTGTTGTCCAAGTGCTGCATAAGATTGGGGAGGTCTGCAAAAGCTGGAGAGACAACAAAAGAAGTTGAAGCTCCATATCAGATTTTaacagtttgtttttaatgaccGTGTGATGGTTTTCAAACCAA
>TU37640
attgttttatttttcattgaatAGTTTCTAATTTTTTTCCCGTGCCTTCAGACCAAGATGTGAATCAGAAGGAACAAACAAATCCCCTGATTGCGTGTACAATTCTGTCataagagagaaacaaagataaCTGGGGTCAATACATCTTATTAACCATCATTTGCTTAGCTGTTATGGCATTTATATACTGTTTAACGAGGAAATATTCTTAATAAGCAACAATCTTTAACATATATTAATATCCTAATCTGAAACCAGCCTTAAACAAAAAGCTGTTCCCTGGGTCTGTGCATAAGGATGTTGGACAAGTGGCCAAAATAGAATGATGTTTGATCAAAAATCAATGCAAGCTGGCCTCTAGGAGACTGCTTAAAAACAGTGATAGACAACTCTGCGATCCACATCCTTCTTAACCATTTAGTTCTCTGTATACATGCTCTGTGTGACCTTCCAATTCACAGGTATTCAGATAGCTATAATGGTTGATCTCATTTGCTGCAAATCCAGTGTAAAATTCATTGTCTATAAAAATATTGAGATTTACTTGAACATAACCTTCTGACTATGTTATAATAAAAACTCCAGATGTCCGTTGCAGTTGCACAGTGGGATGTACTGTataaatattgtataaaataagGCAGTCTTTTCAGTAGGATAAACCAGATCCAAAAATGTCTGGGAGAAAAAAATTTCAAGTCCAAAATGTTTTCACATATTTCTGCTGTTGTTAAATGTCAAGCGGTTTACAGCATTAAACCAAGAGTAAGGGATTGTTGCATCAATGAAAACACCCACACATGtccgtgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagactcgGTTTCTTTCATTTAACACCTTATCATGGACTTTCATGGTGAATGGACATTCATGTAGACATGCGTGTTATCACTGTGGAATTCTGCAAACGCTCTGACGTGTGTTATCATATGGGAGTCGATTCATTTGTAGCGGAAGGAAGCTGTTTGGGTGTTTCGGACTTCTCGAAGGACCCTTGTGCTCTACAGGGCATGCTGCTTACCGTCATCAGCCCCCCCACGAGATCATTCGTATGGGGGTCTTCATCCTTGGTGCCGAACTGTGGGGAGTAGAGCTCAGTTGTCCTCAGGATCTCCAGTACCCGATCCAAGGCCTCTGCCACAGGCATAGGGCTGCTTTCCTGCGCTGCATTGATGATGTTGATTACCTTAGTGATGGGAGCTTCTATAGTCATGGAGTGGATTCGGGCCATCGAGGAGTGCCTGCGCTGTGAGCTCCCATCGCTCCCCCGAGACGTTGTGGATCTAACGTCCAGAGAGC

Function

symbol description
pde8a Predicted to enable 3',5'-cyclic-nucleotide phosphodiesterase activity and metal ion binding activity. Predicted to be involved in cAMP catabolic process. Predicted to act upstream of or within phosphorelay signal transduction system and regulation of transcription, DNA-templated. Orthologous to human PDE8A (phosphodiesterase 8A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37639 True 2187 lncRNA 0.41 2 18555965 18558219
TU37640 False 1359 lncRNA 0.42 4 18542458 18558219

Neighbor

gene id symbol gene type direction distance location
LOC120556233 LOC104953026,LOC102209912,LOC102302305,LOC101469394 coding downstream 60435 18471714 ~ 18482023 (-)
LOC120555694 LOC101077645 coding downstream 76377 18456550 ~ 18466081 (-)
usp8 usp8,LOC102785891 coding downstream 91439 18439582 ~ 18451019 (-)
tmod2 tmod3,LOC102784726,LOC102314562 coding downstream 182248 18335550 ~ 18360210 (-)
lysmd2 lysmd2 coding downstream 214670 18321428 ~ 18327788 (-)
LOC120555642 fsd2 coding upstream 16841 18575060 ~ 18584594 (-)
homer2 homer2 coding upstream 49250 18607469 ~ 18639221 (-)
ap1s2 ap1s2,LOC101078094,LOC107095773,LOC103463884,LOC101477195 coding upstream 113133 18671352 ~ 18676489 (-)
LOC120556226 LOC103360767 coding upstream 141126 18699345 ~ 18705558 (-)
ppef1 NA coding upstream 148071 18706290 ~ 18718603 (-)
G28291 NA non-coding downstream 44369 18497849 ~ 18498089 (-)
G28284 NA non-coding downstream 71008 18469813 ~ 18471450 (-)
G28267 NA non-coding downstream 155850 18385531 ~ 18386608 (-)
G28264 NA non-coding downstream 160079 18381978 ~ 18382379 (-)
G28263 NA non-coding downstream 160936 18381179 ~ 18381522 (-)
G28309 NA non-coding upstream 9882 18568101 ~ 18569077 (-)
G28429 NA non-coding upstream 447689 19005908 ~ 19008421 (-)
G28437 NA non-coding upstream 478629 19036848 ~ 19037059 (-)
G28438 NA non-coding upstream 495105 19053324 ~ 19053869 (-)
G28442 NA non-coding upstream 505109 19063328 ~ 19063839 (-)
G28269 mapk6 other downstream 121959 18416069 ~ 18420499 (-)
G28265 NA other downstream 158816 18382705 ~ 18383642 (-)
G28121 NA other downstream 321908 18218122 ~ 18220550 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other downstream 941068 17599750 ~ 17601390 (-)
G27925 LOC103353204,LOC106512954,LOC102223374,LOC104951141 other downstream 1029290 17508123 ~ 17513168 (-)
LOC120556268 btbd1 other upstream 91810 18650029 ~ 18658659 (-)
G28345 NA other upstream 161153 18719372 ~ 18720019 (-)
LOC120555695 NA other upstream 495872 19054091 ~ 19069996 (-)
LOC120555836 pcnp other upstream 565322 19123541 ~ 19126411 (-)
LOC120555658 NA other upstream 3021749 21579968 ~ 21583558 (-)

Expression


Co-expression Network