LOC120556268 (btbd1)


Basic Information

Item Value
gene id LOC120556268
gene name btbd1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18650029 ~ 18658659 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU37674
CAGGGCCTGCCCAGTCTGGAATATTGTTCGATCGGGAGGTGGTAAATCTGTTtttacactttacagtaaaCCCCAAACCACGGGTCGACTACATCGACAGGCCCCGCTGCTGCCTCAGGGGGGAGGAGTGCAGCATTAATAGATTCCAGCAGGTTGAGAGTCGATGGGGGTACAGTGGTACCAGCGACAGAATCAGATTCAATGTTAACAGAAGAATATGCATAGTGGGTTTTGGCTTGTATGGTTCAATACATGGCCCCAATGACTATCAGGTCAACATACAGATTTTAGAGAGCGACAAACGCATTACACTGGGGCAGAACGACACAGGTTTTAACTGTGACGGCACAGCCAACACTTTCAGAGTGATGTTCAAAGAGCCTGTGGAAATCCTACCCAGTGTCAGCTACACTGCATGTGCCACTTTAAAGGGCCCAGACTCTCATTATGGCACAAAAGGGTTAAAGAAAGTGACCCAGGAATCAGCGACGGGGACCAAGAcgacctttttcttttttagctcGCCAGGAAATAATAACGGTACATCAGTGGAAGATGGGCAGATACCAGAGATCATCTACTACACCTAGACTTAACACGGTGTCATGCAGgAAGCTGCCAGTGCAGGAGTTAATCCTGCACGAGGGAAACTAGAGAGACTGCTACCATTTCATTTAGTTATTTTCTCAGCTTTTGGTGATTCATTTACAGAAAGTATAacatttgcatatttttttattgtgcactGTTATCATTTATTCAGCAGGTGTCTTCAAGTACTTTGTTTTTGCATTGTATCAAGGAtccatgtgtgttgtgtaactTCGCCAGTGGTACTGTACATGTTGTAATTTATGACTACATGTTTGCATAGCa
>XM_039795742.1
GCGCGTGTGCGTCATTTCTGGAGAGACGCAAgctcatagacagtaaaagaaagctagCAGGTAACGTTGGCTAGCTAAACATCAAAGGATGATGGCGTCAACCGCGATGGATACCACGTAAATAACTCACGAGACGGACGGTCGGGGTATTTCCGTGGATCATTAACGGTACTTTGAAGAATTAGAATAAAACAGAGAAGCGTGTCGTTATGGCGACCGGGAGCGGCGACAGCGTCGGCTTAGCGTCAAACCATGACGGTCAGGAGGCAGCATCCAACGCGGTTCAGTCGGTTCAGTCTGGAGCCGCAGCGGTGCTCTCCAACGTGCCAGCCTCCGGCCCTGCCCGGTCCGCCTCCCCGCCTGTCCTCGGCCTTCACCGGGAACCCATGTACAACTGGCAGGCGACGAAGAGCTCCCTGAAGGAGCGCTTCGCCTTCCTCTTCAACAACGAGCTGCTCAGCGACGTCAGGTTTATAGTCGGGAAGGGCAGACAGGCCCAGAGGATACCGGCCCATAAATTTGTCCTGGCAGCTGGCAGTGCCGTTTTTGATGCCATGTTCAACGGAGGGATGGCCACAACCTCGGCTGAAATAGAGCTGCCTGATGTGGAACCGGCAGCCTTCCTCGCCCTGCTCAGGTTCTTGTATTCTGACGAGGTCCACATTGGTCCAGAGACCGTGATGACGACTCTGTATACAGCTAAGAAGTATGCAGTCCCTGCTCTGGAGAGTCACTGTGTGGAGTTCCTCACCAAGCACCTCAGAGCCGACAACGCGTTCATGCTCCTCACTCAGGCAAGGTTATTTGATGAGCCTCAACTTGCCAGTCTCTGCTTAGACACCATAGACAAAAGCACTGCGGACGCAATAAATGCAGAGGGCTTTACAGATATTGACCTCGaAACCTTATGTGCAgtgctacaaagagacacactcAGCATCAGGGAGAACCGCTTATTTGGGGCGGTGGTCCGCTGGGCAGAGGCCGAGTGTTACAGACAACAGCTCCCCCAGACCTCGGAGAACAAACAGAAGGTTCTGGGGAAAGCTCCTCCGCTTACCCTTGATATTCTTTCTTGTGCAACAGGGCCTGCCCAGTCTGGAATATTGTTCGATCGGGAGGTGGTAAATCTGTTtttacactttacagtaaaCCCCAAACCACGGGTCGACTACATCGACAGGCCCCGCTGCTGCCTCAGGGGGGAGGAGTGCAGCATTAATAGATTCCAGCAGGTTGAGAGTCGATGGGGGTACAGTGGTACCAGCGACAGAATCAGATTCAATGTTAACAGAAGAATATGCATAGTGGGTTTTGGCTTGTATGGTTCAATACATGGCCCCAATGACTATCAGGTCAACATACAGATTTTAGAGAGCGACAAACGCATTACACTGGGGCAGAACGACACAGGTTTTAACTGTGACGGCACAGCCAACACTTTCAGAGTGATGTTCAAAGAGCCTGTGGAAATCCTACCCAGTGTCAGCTACACTGCATGTGCCACTTTAAAGGGCCCAGACTCTCATTATGGCACAAAAGGGTTAAAGAAAGTGACCCAGGAATCAGCGACGGGGACCAAGAcgacctttttcttttttagctcGCCAGGAAATAATAACGGTACATCAGTGGAAGATGGGCAGATACCAGAGATCATCTACTACACCTAGACTTAACACGGTGTCATGCAGGTACACTGAGCCAGACACCACAAGACTGGACTGCTGGAGATAAACGTAGTGCCTCATGATCCCTTGGaataaagaatgtgtgtgtttgagatagtgtgtgtatgtgtgtgtgtgtttgagagagtgtgtgtatctgtctatACAATAGCGGTGTACAGACATGATCAAGAATGTGGAAACAAGCGGAGTTGTGGGAAAATCACAGCTCTTGTATGAAGAAAAGCTTTTGTGGCATAAACtgtttcatcatttgtaaatgaTCTAAATCCTGttgtcctgtctgtgtgttgttatcaggAAGCTGCCAGTGCAGGAGTTAATCCTGCACGAGGGAAACTAGAGAGACTGCTACCATTTCATTTAGTTATTTTCTCAGCTTTTGGTGATTCATTTACAGAAAGTATAacatttgcatatttttttattgtgcactGTTATCATTTATTCAGCAGGTGTCTTCAAGTACTTTGTTTTTGCATTGTATCAAGGAtccatgtgtgttgtgtaactTCGCCAGTGGTACTGTACATGTTGTAATTTATGACTACATGTTTGCATAGCacttcattaaaatgaaaagaaaa

Function

symbol description
btbd1 Enables cullin family protein binding activity and identical protein binding activity. Predicted to be involved in neurogenesis. Located in P-body and nucleoplasm. Part of protein-containing complex.

NR:

description
PREDICTED: BTB/POZ domain-containing protein 1 isoform X1

GO: NA

KEGG:

id description
K10477 BTBD1_2; BTB/POZ domain-containing protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
TU37674 False 876 lncRNA 0.44 5 18650051 18652441
XM_039795742.1 True 2278 mRNA 0.49 8 18650029 18658659

Neighbor

gene id symbol gene type direction distance location
homer2 homer2 coding downstream 10808 18607469 ~ 18639221 (-)
LOC120555642 fsd2 coding downstream 65435 18575060 ~ 18584594 (-)
LOC120556233 LOC104953026,LOC102209912,LOC102302305,LOC101469394 coding downstream 168006 18471714 ~ 18482023 (-)
LOC120555694 LOC101077645 coding downstream 183948 18456550 ~ 18466081 (-)
usp8 usp8,LOC102785891 coding downstream 199010 18439582 ~ 18451019 (-)
ap1s2 ap1s2,LOC101078094,LOC107095773,LOC103463884,LOC101477195 coding upstream 12693 18671352 ~ 18676489 (-)
LOC120556226 LOC103360767 coding upstream 40686 18699345 ~ 18705558 (-)
ppef1 NA coding upstream 47631 18706290 ~ 18718603 (-)
cdkl5 LOC106914639,LOC103143564,LOC106952012,LOC105934466,LOC101067260,LOC102215627 coding upstream 70117 18728776 ~ 18767719 (-)
nhsb nhs,LOC101481021,LOC104963549,LOC100699658,LOC102307289 coding upstream 142188 18800847 ~ 18868686 (-)
G28309 NA non-coding downstream 80952 18568101 ~ 18569077 (-)
G28302 pde8a,LOC104953025,LOC106596071,LOC108251619,LOC102210709 non-coding downstream 91810 18542458 ~ 18558219 (-)
G28291 NA non-coding downstream 151940 18497849 ~ 18498089 (-)
G28284 NA non-coding downstream 178579 18469813 ~ 18471450 (-)
G28267 NA non-coding downstream 263421 18385531 ~ 18386608 (-)
G28429 NA non-coding upstream 347249 19005908 ~ 19008421 (-)
G28437 NA non-coding upstream 378189 19036848 ~ 19037059 (-)
G28438 NA non-coding upstream 394665 19053324 ~ 19053869 (-)
G28442 NA non-coding upstream 404669 19063328 ~ 19063839 (-)
G28447 NA non-coding upstream 425643 19084302 ~ 19087065 (-)
G28269 mapk6 other downstream 229530 18416069 ~ 18420499 (-)
G28265 NA other downstream 266387 18382705 ~ 18383642 (-)
G28121 NA other downstream 429479 18218122 ~ 18220550 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other downstream 1048639 17599750 ~ 17601390 (-)
G27925 LOC103353204,LOC106512954,LOC102223374,LOC104951141 other downstream 1136861 17508123 ~ 17513168 (-)
G28345 NA other upstream 60713 18719372 ~ 18720019 (-)
LOC120555695 NA other upstream 395432 19054091 ~ 19069996 (-)
LOC120555836 pcnp other upstream 464882 19123541 ~ 19126411 (-)
LOC120555658 NA other upstream 2921309 21579968 ~ 21583558 (-)
G28933 NA other upstream 2922383 21581042 ~ 21583498 (-)

Expression


Co-expression Network