G28409


Basic Information

Item Value
gene id G28409
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19109918 ~ 19111687 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU37790
TCCTGAGTTGAGTGATCTGCATACATACAGTAATCAACAGGATGCATTATAAGCTGACTGTAAGAAAATTGACATCCCCGACCATTCCAATggatgcatttctttaaaagaatCCAGAGTAAAAGCTATAAAtctttcatttaatattttgacataaaTAAGTGATATAACATCTCATGTTGACACTACACACAGTTTAAACACAATTTATGTATCCTACTttaacaatattattatttaaggACTTGCCATGCTTGCAGTCAGATGACAGTAATCATAGATCTAGACATCCTAGAAAGGTTATGTCCATTGGAATGGTCGGGGGATCTGATgggttaatatttttatttattatacaaCTTGGTTGaatacttgattctgattggtcagtcaCGGCATTCTGCTGCCTGCTGTTTCTTTctatttcacattttaaatcaataaaattgttttaaaattaatatgTGTACTCATACCAAGCTCATACCGCTGATCAGCGGAtcacaaagggagagagagggtggatgAAACAGAATCAGCAACATTATTGTGAATTGAACCCCTTCAGACTGATTCAAGACGTCCTGCATAACCCTGTCGGGATTCTTATTTGCAATAATGATCGACTTGTTCTACACTACCCCTTATCTATATTGTATTCTTGAATTGCCCTCAATAAGTTTTCTTTTTAGTATGAAAGCTGACACAAGGAACTTATCCTGTCAGCTGCAAAGACATACTGTAATTataaatgaaatggaaaaatgcTTCTTGTTATTACGTTAGTAGCCTATACATGATCACATTAGCTATAGCACATTAGCTATAGCTATGTTGAGGTGTTGCTTTTTATAGTGGCTGATTAATTAAAATCCCTGTTTTAGATTTTAATGGTGTAACTGGATTTCCCTACTTTATTATTACACATTTTCCTGCCATGCACTGTGTGATTTTATGTAAGTGTTCTTTGGgaaacatttacatacatttgttttactgtagtacatacagtaaaagaggacctatttgggctgattttgtgtgtaaaaggaacaataaagatgaacacaaagaaagtaAGAAAACTTCCTGCACGAGGGAGAGGAGGAcgagtaccaggacaattcttTCTCTGtccactttttttcataaaccgtacattctataaagctactctgagatgggtcattcatcttttcttcagcatttctgcagcaaaagaaacaaaatgcatacatttactaaacccaacaaaacaaaaatgtagagaggcttcaagagaaactgcagtgtaaaacacaatctatgatcaataTGATCATTATTGTCTTATGTATAAGGGCATACCtgacacatataaaataatgcagtttctgtaattccatctgatgttagtgttttgtatgacattgtgttatgattgactaaatgttcctgatGGAAGATAACATgtatatttgattttgagacatgtttgcattgttttggtagacATAGTGTATTGTTTTAGTGaattgttgtattttgaaaattagtgttggagtttagttttcaatgtgtgattttgggcatgaaattaactgttttgccaattgTGTGTTGTAGATGTGTTGATGTCTTAAGAATTTAGGAAAGTTGTTCAAAAATTGTCACAgcgatcgtaaaaaactgtaatattgtACTGTCACTGTCATGCTGCTCTTCATCCTTATCCATTTCCTCTATCACTGCATGTACTGTACCATAAAATGACTTACTGTGATGCCCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37790 True 1770 lncRNA 0.34 1 19109918 19111687

Neighbor

gene id symbol gene type direction distance location
LOC120555696 NA coding upstream 855 19104266 ~ 19109063 (+)
tmem39a tmem39a coding upstream 85946 19010477 ~ 19023972 (+)
LOC120556409 LOC104967794 coding upstream 101532 18999528 ~ 19008386 (+)
LOC120555986 LOC103365180,LOC104967792 coding upstream 114640 18970586 ~ 18995278 (+)
LOC120555985 NA coding upstream 140440 18958969 ~ 18969478 (+)
LOC120555834 NA coding downstream 2279 19113966 ~ 19123540 (+)
stk16 stk16 coding downstream 15193 19126880 ~ 19132812 (+)
mnx2b LOC103365191,LOC104967070 coding downstream 52907 19164594 ~ 19168813 (+)
atic atic,LOC103365192,LOC102792413 coding downstream 62505 19174192 ~ 19181908 (+)
rbms1a LOC104918252,LOC103359468,LOC103143540 coding downstream 125558 19237245 ~ 19256129 (+)
G28408 NA non-coding upstream 6262 19103360 ~ 19103656 (+)
G28407 NA non-coding upstream 6843 19102717 ~ 19103075 (+)
G28406 NA non-coding upstream 8129 19101053 ~ 19101789 (+)
G28405 NA non-coding upstream 9279 19100419 ~ 19100639 (+)
G28398 NA non-coding upstream 15018 19094685 ~ 19094900 (+)
G28465 NA non-coding downstream 44910 19156597 ~ 19156813 (+)
G28473 LOC103359471 non-coding downstream 78431 19190118 ~ 19191162 (+)
G28474 LOC103359471 non-coding downstream 80085 19191772 ~ 19193265 (+)
G28479 LOC103359471 non-coding downstream 85059 19196746 ~ 19198227 (+)
G28492 psmd14,LOC107563735 non-coding downstream 118268 19229955 ~ 19230628 (+)
LOC120555697 NA other upstream 22854 19074308 ~ 19087064 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 533976 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1366470 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3623467 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3663426 15441455 ~ 15446492 (+)
G28581 NA other downstream 375559 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 400669 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 660432 19772119 ~ 19993954 (+)
G28770 NA other downstream 1599417 20711104 ~ 20761147 (+)
G28826 NA other downstream 2284526 21396213 ~ 21403450 (+)

Expression


Co-expression Network