G28438


Basic Information

Item Value
gene id G28438
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19053324 ~ 19053869 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU37828
tgcttgaCTCGGCTCGACTTGGCTCGACCGCGGTGCCCCgccctccattttccattgcagatttagtacacCTTATGCCTGAGGCAAGCGTGACTGGTCGTCATAGTggcgccgcaggaaactgccgtgacctaacacGGCAcgcacacagaacgtcgaaggtgtgttgtttttgactctcagcatgtggctgttgccagAAGACAacttttgtttcaaaagaagctggaggcagcaaaaaaaacacagctggctaaactatttaaaaatggcgggtttgttcaggacacccccgtctgtcgctagcaatgatgacgcagtgattagtgacgattctctctggccaatcagtagtctgcaggttttcacgtcaccttttggtatcggctcagctcgcttggaacctggacggaggtggtactaaaaaaaagtaactGTTAGCAGGTACaagggactttttttcgtaatggtaaaccaaaaaaggcgagtagagtcgaggcgagtcgagcaggtaccgcgtgatggaaaaacgccataatgCAGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37828 True 546 lncRNA 0.50 1 19053324 19053869

Neighbor

gene id symbol gene type direction distance location
LOC120555913 prss23,LOC103365183,LOC104967790 coding downstream 24087 19025898 ~ 19029237 (-)
grpr grpr,LOC103365195 coding downstream 103054 18942607 ~ 18950270 (-)
LOC120556456 NA coding downstream 155627 18890562 ~ 18897697 (-)
nhsb nhs,LOC101481021,LOC104963549,LOC100699658,LOC102307289 coding downstream 184638 18800847 ~ 18868686 (-)
cdkl5 LOC106914639,LOC103143564,LOC106952012,LOC105934466,LOC101067260,LOC102215627 coding downstream 285605 18728776 ~ 18767719 (-)
fn1b fn1,LOC103359471 coding upstream 128659 19182528 ~ 19207643 (-)
psmd14 psmd14,psde,LOC107563735 coding upstream 173770 19227639 ~ 19232840 (-)
marchf7 LOC104963329 coding upstream 289555 19343424 ~ 19358367 (-)
LOC120555523 LOC103359460,LOC102291763,LOC102215599,LOC101468151 coding upstream 405302 19459171 ~ 19495413 (-)
gtf2f2a gtf2f2 coding upstream 446660 19500529 ~ 19508532 (-)
G28437 NA non-coding downstream 16265 19036848 ~ 19037059 (-)
G28429 NA non-coding downstream 44903 19005908 ~ 19008421 (-)
G28309 NA non-coding downstream 484247 18568101 ~ 18569077 (-)
G28302 pde8a,LOC104953025,LOC106596071,LOC108251619,LOC102210709 non-coding downstream 495105 18542458 ~ 18558219 (-)
G28291 NA non-coding downstream 555235 18497849 ~ 18498089 (-)
G28442 NA non-coding upstream 9459 19063328 ~ 19063839 (-)
G28447 NA non-coding upstream 30433 19084302 ~ 19087065 (-)
G28456 NA non-coding upstream 56518 19110387 ~ 19111769 (-)
G28457 NA non-coding upstream 62118 19115987 ~ 19116404 (-)
G28460 NA non-coding upstream 67082 19120951 ~ 19122762 (-)
G28345 NA other downstream 333305 18719372 ~ 18720019 (-)
LOC120556268 btbd1 other downstream 394665 18650029 ~ 18658659 (-)
G28269 mapk6 other downstream 632825 18416069 ~ 18420499 (-)
G28265 NA other downstream 669682 18382705 ~ 18383642 (-)
G28121 NA other downstream 832774 18218122 ~ 18220550 (-)
LOC120555695 NA other upstream 222 19054091 ~ 19069996 (-)
LOC120555836 pcnp other upstream 69672 19123541 ~ 19126411 (-)
LOC120555658 NA other upstream 2526099 21579968 ~ 21583558 (-)
G28933 NA other upstream 2527173 21581042 ~ 21583498 (-)
gpc6a LOC101477426,LOC100710496,LOC102798074,LOC103365236,LOC102217784 other upstream 2832719 21886588 ~ 22051625 (-)

Expression


Co-expression Network