LOC120555836 (pcnp)


Basic Information

Item Value
gene id LOC120555836
gene name pcnp
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19123541 ~ 19126411 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU37839
CTGAAGAAGACTAGCGGCTTGACTTGTCTGGTTCCACAGGAAACGTTATGGCGGATTACGAGAATAACAGAAGGGGTGGCAACGACGACGGAGGTGATATTTGTGCTGTTTTAACGTCTAAAATGTGGCCGACAAAATAAGCAGTATTTAGCGTTAGCTCGATTGTTCAACCTATCCATGAAAACTACGCCCAGCTAATGTTAGACTGAGGAAACTTCACAAACGTTAAGCTAACTTAATGTTAGCTGCGTATcactggctaacgttagctagtgcGAAGTAACGTAAATAGTTTGCGTTGTATTAACGTAAACTATTTAGCTATGGGAATTGGGATGGCTGTAACTTCACGGCTAAAGTAACCGCTAGCTACGTTAGTCAGAGAATATGTTGAATATTTGCCTTCAGCCAGTCTCTTCGTTATCTTGCTAACCTGGCGTTAGCCTAGCTAGCGTGCAAGTATAGACGCAGGTTAACAACGTTATTATTATTTGCCCTCAGACCCTGTACAGCACTCTGTGTACCTTAACCCTGATATTGTAGGTAGTTTCTGCATACACAGTTCCAATGTGGACTATTAAGACCGTAAGTTAAATGGCAAGAACCTaagttaggctaacgttacattttgCTAGTTAATGGCTTGAAACCTTAGCCACACAGGTAAAGGTGATAGCTTATTATTCTCCAGTTCCCAGGAAACAGTTGTTCACCTTGGTGAGTTGTCTTGCCTCAAGCAGGGCCGcaggaggagggagacagagtgaaAACTAAGCCTGTCTCTTGTAGCACTGTGGGCGAAGGGACCGCAGTCAAACGCAAATCCCAGCATCTCACACCTGAAGATGAGGATGAGTCCTCCGCAGACCCACCAGCACCCCGCAAAATCTCCAAGATTGGCTTTAGCATGAGCAGTCCGATGGGGAAGAAGTCGAACCCCATTTctatcaaacttggagcatcAAAACCCAAAGAGCCAGTACCATCAGCTCCTCCAAAAAAGTCAGGGATGGCGTCTGTTTTTGACGAAGATGATAGTGAACCTGAGGAGATGCCCCCAGAAGCAAAGATGAGGATGAAGAATATTGGCAGAGAGACACCGACATCTGCAGGACCCAATTCCTTCAACAAGGGCAAGCAGGGTTTCTCTGATCATCAAAAACTTTGGGAGAGGAAGATGAAGGCCCAAGCAGACAAATTGTAAATGACTACTGTGAAGTTGCCACTACAACTACCACAGTTTGTGTCACTAAAAGAGGAGCGTGTGTGTATAGTTTAAACCATGTCAGAGATATCTATAAAGGCTCAAATGATTCCTTACTGTAGCCTCGGTTTTGACAACTTCTCAGCTTTGTGGACATACGGTAAAGAATACTTTAAGCCCTCTATGATATTATGTGACTGAGCTCACGTTTACGTTTCTAACCACTACTGGCTGATGCTAACTAAGAAAAGAGGTACCAGTGTCAACCCTTTTGTGATGAGAGGTGGGGTGATAGAGATAtgggacaaaaaaataattagccAGAATATTGTTTATACTAAAATTTGCTACAGTTGCTTTCTGCTGGTTAATTAGAAAATCTAGCATCTTAGAGCCCCCATGCCCCTTTTGTGACATGCTTGTTCCCAACTGAAGCTGGTTGGTTGTGGTGCTGAGCAAGCTCTCAGTGTTTGCTTGTCAAATATTTGTGTAAAAATGTACATAGAAGTGtgataatgttttatttttaaatccacaaatgggagtgtgtgtttgagtgttaaCGTAATCTTGCATGTGTGGCATAAACCAGACCTACAGATGGattgtttcatttcatttagtTTCGCAACATTAATGTACAACCCTTTGTTTTCACCAGCTATGCCACCTTATAGGCagtcttttgttttgttagttTAAGCTTTGTGTCAGTATTTCTGGTTTTGTTTACTTACTGGTTTTGTATTGAATCTGGCAATTTAAAAACCCTACAAAAATGATGTTCTGATGGAAGGACTGCTAATGTGTTTTTAGTTGACAACTGTGTGAAGACAGCTGTCACATGAACACCGGGGTGCTGGTAACACTTATTTTGAATGATTTCCAGGGGGTTAAAATGCTGGTCAGCAATGATTAGACACTTTTACAAACTCTTTTCATCGCCACTTTCACATCAGAAATAATGTGGAACCTCAGTGACTTATTCTGTGCCTGACACTTTCTTGGAAAACTCCCTTCATCAAAAATATGAACCCTGAATTCCTCTGTAGGTTACCTGACTGTTGTGCTTCCCCAAATGAATAACATAAACATCCACTGCTGCGACCTGTTTTATCTAACAACtc
>TU37840
CTGAAGAAGACTAGCGGCTTGACTTGTCTGGTTCCACAGGAAACGTTATGGCGGATTACGAGAATAACAGAAGGGGTGGCAACGACGACGGAGCACTGTGGGCGAAGGGACCGCAGTCAAACGCAAATCCCAGCATCTCACACCTGAAGATGAGGATGAGTCCTCCGCAGACCCACCAGCACCCCGCAAAATCTCCAAGATTGGCTTTAGCATGAGCAGTCCGATGGGGAAGAAGTCGAACCCCATTTctatcaaacttggagcatcAAAACCCAAAGAGCCAGTACCATCAGCTCCTCCAAAAAAGTCAGGGATGGCGTCTGTTTTTGACGAAGATGATAGTGAACCTGAGGAGATGCCCCCAGAAGCAAAGATGAGGATGAAGAATATTGGCAGAGAGACACCGACATCTGCAGGACCCAATTCCTTCAACAAGGGCAAGCAGGGTTTCTCTGATCATCAAAAACTTTGGGAGAGGAAGATGAAGGCCCAAGCAGACAAATTGTAAATGACTACTGTGAAGTTGCCACTACAACTACCACAGTTTGTGTCACTAAAAGAGGAGCGTGTGTGTATAGTTTAAACCATGTCAGAGATATCTATAAAGGCTCAAATGATTCCTTACTGTAGCCTCGGTTTTGACAACTTCTCAGCTTTGTGGACATACGGTAAAGAATACTTTAAGCCCTCTATGATATTATGTGACTGAGCTCACGTTTACGTTTCTAACCACTACTGGCTGATGCTAACTAAGAAAAGAGGTACCAGTGTCAACCCTTTTGTGATGAGAGGTGGGGTGATAGAGATAtgggacaaaaaaataattagccAGAATATTGTTTATACTAAAATTTGCTACAGTTGCTTTCTGCTGGTTAATTAGAAAATCTAGCATCTTAGAGCCCCCATGCCCCTTTTGTGACATGCTTGTTCCCAACTGAAGCTGGTTGGTTGTGGTGCTGAGCAAGCTCTCAGTGTTTGCTTGTCAAATATTTGTGTAAAAATGTACATAGAAGTGtgataatgttttatttttaaatccacaaatgggagtgtgtgtttgagtgttaaCGTAATCTTGCATGTGTGGCATAAACCAGACCTACAGATGGattgtttcatttcatttagtTTCGCAACATTAATGTACAACCCTTTGTTTTCACCAGCTATGCCACCTTATAGGCagtcttttgttttgttagttTAAGCTTTGTGTCAGTATTTCTGGTTTTGTTTACTTACTGGTTTTGTATTGAATCTGGCAATTTAAAAACCCTACAAAAATGATGTTCTGATGGAAGGACTGCTAATGTGTTTTTAGTTGACAACTGTGTGAAGACAGCTGTCACATGAACACCGGGGTGCTGGTAACACTTATTTTGAATGATTTCCAGGGGGTTAAAATGCTGGTCAGCAATGATTAGACACTTTTACAAACTCTTTTCATCGCCACTTTCACATCAGAAATAATGTGGAACCTCAGTGACTTATTCTGTGCCTGACACTTTCTTGGAAAACTCCCTTCATCAAAAATATGAACCCTGAATTCCTCTGTAGGTTACCTGACTGTTGTGCTTCCCCAAATGAATAACATAAACATCCACTGCTGCGACCTGTTTTATCTAACAACtc
>XM_039794971.1
AATAGTGTGTACGGAGCTTGTTTGGCGCGTAGCGACTGAAGAAGACTAGCGGCTTGACTTGTCTGGTTCCACAGGAAACGTTATGGCGGATTACGAGAATAACAGAAGGGGTGGCAACGACGACGGAGGGCCGcaggaggagggagacagagtgaaAACTAAGCCTGTCTCTTGTAGCACTGTGGGCGAAGGGACCGCAGTCAAACGCAAATCCCAGCATCTCACACCTGAAGATGAGGATGAGTCCTCCGCAGACCCACCAGCACCCCGCAAAATCTCCAAGATTGGCTTTAGCATGAGCAGTCCGATGGGGAAGAAGTCGAACCCCATTTctatcaaacttggagcatcAAAACCCAAAGAGCCAGTACCATCAGCTCCTCCAAAAAAGTCAGGGATGGCGTCTGTTTTTGACGAAGATGATAGTGAACCTGAGGAGATGCCCCCAGAAGCAAAGATGAGGATGAAGAATATTGGCAGAGAGACACCGACATCTGCAGGACCCAATTCCTTCAACAAGGGCAAGCAGGGTTTCTCTGATCATCAAAAACTTTGGGAGAGGAAGATGAAGGCCCAAGCAGACAAATTGTAAATGACTACTGTGAAGTTGCCACTACAACTACCACAGTTTGTGTCACTAAAAGAGGAGCGTGTGTGTATAGTTTAAACCATGTCAGAGATATCTATAAAGGCTCAAATGATTCCTTACTGTAGCCTCGGTTTTGACAACTTCTCAGCTTTGTGGACATACGGTAAAGAATACTTTAAGCCCTCTATGATATTATGTGACTGAGCTCACGTTTACGTTTCTAACCACTACTGGCTGATGCTAACTAAGAAAAGAGGTACCAGTGTCAACCCTTTTGTGATGAGAGGTGGGGTGATAGAGATAtgggacaaaaaaataattagccAGAATATTGTTTATACTAAAATTTGCTACAGTTGCTTTCTGCTGGTTAATTAGAAAATCTAGCATCTTAGAGCCCCCATGCCCCTTTTGTGACATGCTTGTTCCCAACTGAAGCTGGTTGGTTGTGGTGCTGAGCAAGCTCTCAGTGTTTGCTTGTCAAATATTTGTGTAAAAATGTACATAGAAGTGtgataatgttttatttttaaatccacaaatgggagtgtgtgtttgagtgttaaCGTAATCTTGCATGTGTGGCATAAACCAGACCTACAGATGGattgtttcatttcatttagtTTCGCAACATTAATGTACAACCCTTTGTTTTCACCAGCTATGCCACCTTATAGGCagtcttttgttttgttagttTAAGCTTTGTGTCAGTATTTCTGGTTTTGTTTACTTACTGGTTTTGTATTGAATCTGGCAATTTAAAAACCCTACAAAAATGATGTTCTGATGGAAGGACTGCTAATGTGTTTTTAGTTGACAACTGTGTGAAGACAGCTGTCACATGAACACCGGGGTGCTGGTAACACTTATTTTGAATGATTTCCAGGGGGTTAAAATGCTGGTCAGCAATGATTAGACACTTTTACAAACTCTTTTCATCGCCACTTTCACATCAGAAATAATGTGGAACCTCAGTGACTTATTCTGTGCCTGACACTTTCTTGGAAAACTCCCTTCATCAAAAATATGAACCCTGAATTCCTCTGTAGGTTACCTGACTGTTGTGCTTCCCCAAATGAATAACATAAACATCCACTGCTGCGACCTGTTTTATCTAACAACtcagtcaaatacattttttggaTGAAC

Function

symbol description
pcnp Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be active in nucleus. Orthologous to human PCNP (PEST proteolytic signal containing nuclear protein).

NR:

description
PREDICTED: PEST proteolytic signal-containing nuclear protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37839 True 2331 TUCP 0.42 4 19123566 19126376
TU37840 False 1635 TUCP 0.42 5 19123566 19126376
XM_039794971.1 False 1744 mRNA 0.42 5 19123541 19126411

Neighbor

gene id symbol gene type direction distance location
LOC120555913 prss23,LOC103365183,LOC104967790 coding downstream 94304 19025898 ~ 19029237 (-)
grpr grpr,LOC103365195 coding downstream 173271 18942607 ~ 18950270 (-)
LOC120556456 NA coding downstream 225844 18890562 ~ 18897697 (-)
nhsb nhs,LOC101481021,LOC104963549,LOC100699658,LOC102307289 coding downstream 254855 18800847 ~ 18868686 (-)
cdkl5 LOC106914639,LOC103143564,LOC106952012,LOC105934466,LOC101067260,LOC102215627 coding downstream 355822 18728776 ~ 18767719 (-)
fn1b fn1,LOC103359471 coding upstream 56117 19182528 ~ 19207643 (-)
psmd14 psmd14,psde,LOC107563735 coding upstream 101228 19227639 ~ 19232840 (-)
marchf7 LOC104963329 coding upstream 217013 19343424 ~ 19358367 (-)
LOC120555523 LOC103359460,LOC102291763,LOC102215599,LOC101468151 coding upstream 332760 19459171 ~ 19495413 (-)
gtf2f2a gtf2f2 coding upstream 374118 19500529 ~ 19508532 (-)
G28460 NA non-coding downstream 779 19120951 ~ 19122762 (-)
G28457 NA non-coding downstream 7137 19115987 ~ 19116404 (-)
G28456 NA non-coding downstream 11772 19110387 ~ 19111769 (-)
G28447 NA non-coding downstream 36476 19084302 ~ 19087065 (-)
G28442 NA non-coding downstream 59702 19063328 ~ 19063839 (-)
G28464 NA non-coding upstream 9327 19135738 ~ 19136610 (-)
G28495 NA non-coding upstream 99721 19226132 ~ 19227494 (-)
G28516 NA non-coding upstream 166563 19292974 ~ 19294310 (-)
G28545 NA non-coding upstream 204079 19330490 ~ 19331515 (-)
G28552 NA non-coding upstream 225586 19351997 ~ 19409502 (-)
LOC120555695 NA other downstream 53545 19054091 ~ 19069996 (-)
G28345 NA other downstream 403522 18719372 ~ 18720019 (-)
LOC120556268 btbd1 other downstream 464882 18650029 ~ 18658659 (-)
G28269 mapk6 other downstream 703042 18416069 ~ 18420499 (-)
G28265 NA other downstream 739899 18382705 ~ 18383642 (-)
LOC120555658 NA other upstream 2453557 21579968 ~ 21583558 (-)
G28933 NA other upstream 2454631 21581042 ~ 21583498 (-)
gpc6a LOC101477426,LOC100710496,LOC102798074,LOC103365236,LOC102217784 other upstream 2760177 21886588 ~ 22051625 (-)
LOC120555944 LOC103365297,LOC100709700,LOC102795695,LOC102312860 other upstream 3144459 22270870 ~ 22336817 (-)
cbfa2t3 cbfa2t3,LOC102789151 other upstream 3422289 22548700 ~ 22601557 (-)

Expression


Co-expression Network