G28473 (LOC103359471)


Basic Information

Item Value
gene id G28473
gene name LOC103359471
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19190118 ~ 19191162 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU37865
CCAGGTGCCACCACCTCAGAGTAGGAGGGTCCCAGGCCATTCTTAGGGACACTGGTGATTCTGTAGCCTCTGATTGGTCCCTGAGCAGGAGACCAGCGCACCGTGATGGCGTTGTCACTGACATCCGTCAGTTTCATTTGTGTGGGGGACTCAGTATCAGTCTTGTGCGTGATGTAGACCGGGGTGTTTGAGGAAGGGCTGTCCCCTCTTCCAGTAACCGCGTAGACCGTGATGGTGTAGTCAGTACCGGGCTTCAGACCGGTGATGGTGGCGGTGGTCTGTGTGCCTGGGATTGTGAACTCTTGAGGAGTCTCACCACtTGTGCCTCCGTAGGTGATCCTGTAGTTCTTCACTGTGACAGAGGGGGCATCCCAGCGAATGGTGATGCTGGACGGGGTGGACGATGTTACCTCCAGGTCAGTGGGAGCATCGGAGATGGTGGCCTGTGTGCCAGTCAGAGGCTGACTCTCCTGATTATTGTTGACAGCATACACATATATCAGATACTCCGTCTCTGGCGTCAGTCCAGTCAAAGTGAAGTGGTTCCTGGATGGGGGCAGCCTCTCGTCTTTCGGCCGCCCGCCGCTCGTCTTCTGAAAGCGGAGGCGGTAGCCGGTAATGGCAGCAGTCGGAGCCACCCAGTGAATGGTGAAGGAGTTGGTGCGAATATCGGAGAAGTCCAAGCCAGTGGGGGAGTCAAGAG

Function

NR:

description
General transcription factor II-I repeat domain-containing protein 2B, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37865 True 703 lncRNA 0.57 4 19190118 19191162

Neighbor

gene id symbol gene type direction distance location
atic atic,LOC103365192,LOC102792413 coding upstream 8210 19174192 ~ 19181908 (+)
mnx2b LOC103365191,LOC104967070 coding upstream 21305 19164594 ~ 19168813 (+)
stk16 stk16 coding upstream 57306 19126880 ~ 19132812 (+)
LOC120555834 NA coding upstream 66578 19113966 ~ 19123540 (+)
LOC120555696 NA coding upstream 81055 19104266 ~ 19109063 (+)
rbms1a LOC104918252,LOC103359468,LOC103143540 coding downstream 46083 19237245 ~ 19256129 (+)
itgb6 itgb6 coding downstream 70129 19261291 ~ 19275805 (+)
pla2r1 pla2r1 coding downstream 85991 19277153 ~ 19305912 (+)
ly75 NA coding downstream 117176 19308338 ~ 19342577 (+)
baz2ba baz2b coding downstream 182819 19373981 ~ 19444669 (+)
G28465 NA non-coding upstream 33305 19156597 ~ 19156813 (+)
G28409 NA non-coding upstream 78431 19109918 ~ 19111687 (+)
G28408 NA non-coding upstream 86462 19103360 ~ 19103656 (+)
G28407 NA non-coding upstream 87043 19102717 ~ 19103075 (+)
G28406 NA non-coding upstream 88329 19101053 ~ 19101789 (+)
G28474 LOC103359471 non-coding downstream 610 19191772 ~ 19193265 (+)
G28479 LOC103359471 non-coding downstream 5584 19196746 ~ 19198227 (+)
G28492 psmd14,LOC107563735 non-coding downstream 38793 19229955 ~ 19230628 (+)
G28526 NA non-coding downstream 131870 19323032 ~ 19344125 (+)
G28571 NA non-coding downstream 273048 19464210 ~ 19464532 (+)
LOC120555697 NA other upstream 103054 19074308 ~ 19087064 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 614176 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1446670 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3703667 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3743626 15441455 ~ 15446492 (+)
G28581 NA other downstream 296084 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 321194 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 580957 19772119 ~ 19993954 (+)
G28770 NA other downstream 1519942 20711104 ~ 20761147 (+)
G28826 NA other downstream 2205051 21396213 ~ 21403450 (+)

Expression


Co-expression Network