G28479 (LOC103359471)


Basic Information

Item Value
gene id G28479
gene name LOC103359471
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19196746 ~ 19198227 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU37873
GCCTGAGGCCTGGACCAGCTGATTCGGATGGAGGACTCACCCACCTCATCGACTGCGTGCTGAGTAGGGGCGTCAGGAGCTGTAGTCTGGGACGTAGTCAGAATGAGGTTTGGCTGTCCCTGATGTGGGAGCTCGTAGACGTTGACGTTGTATCTGCGTCCTGGCAGGAGGTCCGCGATAGTGACAGAGTTGGCTGTGCGAGGAACATCCAGGACTTTTGATTTGGC

Function

NR:

description
PREDICTED: fibronectin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37873 True 227 lncRNA 0.57 3 19196746 19198227

Neighbor

gene id symbol gene type direction distance location
atic atic,LOC103365192,LOC102792413 coding upstream 14838 19174192 ~ 19181908 (+)
mnx2b LOC103365191,LOC104967070 coding upstream 27933 19164594 ~ 19168813 (+)
stk16 stk16 coding upstream 63934 19126880 ~ 19132812 (+)
LOC120555834 NA coding upstream 73206 19113966 ~ 19123540 (+)
LOC120555696 NA coding upstream 87683 19104266 ~ 19109063 (+)
rbms1a LOC104918252,LOC103359468,LOC103143540 coding downstream 39018 19237245 ~ 19256129 (+)
itgb6 itgb6 coding downstream 63064 19261291 ~ 19275805 (+)
pla2r1 pla2r1 coding downstream 78926 19277153 ~ 19305912 (+)
ly75 NA coding downstream 110111 19308338 ~ 19342577 (+)
baz2ba baz2b coding downstream 175754 19373981 ~ 19444669 (+)
G28474 LOC103359471 non-coding upstream 3481 19191772 ~ 19193265 (+)
G28473 LOC103359471 non-coding upstream 5584 19190118 ~ 19191162 (+)
G28465 NA non-coding upstream 39933 19156597 ~ 19156813 (+)
G28409 NA non-coding upstream 85059 19109918 ~ 19111687 (+)
G28408 NA non-coding upstream 93090 19103360 ~ 19103656 (+)
G28492 psmd14,LOC107563735 non-coding downstream 31728 19229955 ~ 19230628 (+)
G28526 NA non-coding downstream 124805 19323032 ~ 19344125 (+)
G28571 NA non-coding downstream 265983 19464210 ~ 19464532 (+)
G28572 NA non-coding downstream 266823 19465050 ~ 19465340 (+)
G28573 NA non-coding downstream 268085 19466312 ~ 19466524 (+)
LOC120555697 NA other upstream 109682 19074308 ~ 19087064 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 620804 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1453298 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3710295 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3750254 15441455 ~ 15446492 (+)
G28581 NA other downstream 289019 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 314129 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 573892 19772119 ~ 19993954 (+)
G28770 NA other downstream 1512877 20711104 ~ 20761147 (+)
G28826 NA other downstream 2197986 21396213 ~ 21403450 (+)

Expression


Co-expression Network