G28516


Basic Information

Item Value
gene id G28516
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19292974 ~ 19294310 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU37917
CCTCTCCAGGCTGCCCAATGGACAGGCCGATCCACCAGTCTGTCGGGCCCAGCGAGAGCTGAGGAGACACAGttacagaacagaacagagatGAAAAAGAACTTCACTTTTAACCCTCCTCCTTTGCAATCAAGTCCTCACTGAGCCAGAAGATCGGCTTTTCAGAGCCTCTCTGCCATTCAGGCACTCTCCTTGCCCCGTGCTTCCCTTCTTTCACGGCCTTGTTTTGTTCCCTTTATCCCCTCACAAGCCTCAACACCACAAGAGACTTCTTTAGTGTGGTCCAAAAGGCCGCCGCCGAaaaacagccttttttttttactctctgtGTGTGGGGGCACTCAAGCATGAAAGTGTCCGCACATGAGGTACATTTTAGCTTGTAGACGTGTGTCTGTAAACACTTGAGTTTGTATGAGTGTGTCAATTGTTtgttttcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaactgttAGGAGAAAAGGCCTATTGGGCCATTCGTTGGAGAAGAGCCTCTGCGATTAAGTACACTGCTCTGGCTGTGTGTACTCCTGTGTGAAATTGTGCTCCTGCTCACTGAAACCAAAAAAACTATTGTTAATGTCTCAACGCCTCCGGCCTCATTATCGTCACGTAATTAGATGCTGGGAGTATTTGCATGGAGAAAAAGTAAATGTTAGatgcattttatatttttgaaataactgaaatacatttttcacattccATGTTTTACAATGAAATATGAGATATTGCAATATGAATTAGTTGTGGTTTGTTCATCACAATAATATCATACACATTTGTGCTGTATATAGGATATCGTCCACTAGACgttttttattactttagcCGACATAATTATACTACAAAATTTTGATTCTGACAAATGCCTTAGGGTGGACAAAAAGTAATGTTCtggaaaaaatgaaaactatTTCAGTAGTGCTGTATGCTACCACCTCAGAGTTATTATAAAACAGAAGCCTTCCTACAAATATATGGCAGTCTGGCAATACTGAAATTCTGTGAATCTAGGTTTTAGCAGTCACAATAACAGACCCGCCGCAAGCGCTCCTTGACAAAGTGCAGCTCCTCTCTGGAGTGAATGGACAGCAGGTAGGCTCCCATCATCTGACAGGCCAGAGAGACGGCGTCCCAATCAAAGGGCTGCTTGGCCAGCAGGTACTCAGCCCCACGGTAAAACACCCACGGCTCGCTCTCTGTGGTGGAGCCAGACGGACAATTATAACATTTTCAggtaatacaattttaaatatatatcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37917 True 1294 lncRNA 0.43 2 19292974 19294310

Neighbor

gene id symbol gene type direction distance location
psmd14 psmd14,psde,LOC107563735 coding downstream 60134 19227639 ~ 19232840 (-)
fn1b fn1,LOC103359471 coding downstream 85331 19182528 ~ 19207643 (-)
LOC120555913 prss23,LOC103365183,LOC104967790 coding downstream 263737 19025898 ~ 19029237 (-)
grpr grpr,LOC103365195 coding downstream 342704 18942607 ~ 18950270 (-)
LOC120556456 NA coding downstream 395277 18890562 ~ 18897697 (-)
marchf7 LOC104963329 coding upstream 49114 19343424 ~ 19358367 (-)
LOC120555523 LOC103359460,LOC102291763,LOC102215599,LOC101468151 coding upstream 164861 19459171 ~ 19495413 (-)
gtf2f2a gtf2f2 coding upstream 206219 19500529 ~ 19508532 (-)
gpalpp1 gpalpp1 coding upstream 214375 19508685 ~ 19511713 (-)
LOC120556479 NA coding upstream 959403 20253713 ~ 20279186 (-)
G28495 NA non-coding downstream 65480 19226132 ~ 19227494 (-)
G28464 NA non-coding downstream 156364 19135738 ~ 19136610 (-)
G28460 NA non-coding downstream 170212 19120951 ~ 19122762 (-)
G28457 NA non-coding downstream 176570 19115987 ~ 19116404 (-)
G28456 NA non-coding downstream 181205 19110387 ~ 19111769 (-)
G28545 NA non-coding upstream 36180 19330490 ~ 19331515 (-)
G28552 NA non-coding upstream 57687 19351997 ~ 19409502 (-)
G28557 NA non-coding upstream 123102 19417412 ~ 19418435 (-)
G28558 baz2b non-coding upstream 126238 19420548 ~ 19435713 (-)
G28623 LOC103359454,LOC100700192 non-coding upstream 235262 19529572 ~ 19531634 (-)
LOC120555836 pcnp other downstream 166563 19123541 ~ 19126411 (-)
LOC120555695 NA other downstream 222978 19054091 ~ 19069996 (-)
G28345 NA other downstream 572955 18719372 ~ 18720019 (-)
LOC120556268 btbd1 other downstream 634315 18650029 ~ 18658659 (-)
G28269 mapk6 other downstream 872475 18416069 ~ 18420499 (-)
LOC120555658 NA other upstream 2285658 21579968 ~ 21583558 (-)
G28933 NA other upstream 2286732 21581042 ~ 21583498 (-)
gpc6a LOC101477426,LOC100710496,LOC102798074,LOC103365236,LOC102217784 other upstream 2592278 21886588 ~ 22051625 (-)
LOC120555944 LOC103365297,LOC100709700,LOC102795695,LOC102312860 other upstream 2976560 22270870 ~ 22336817 (-)
cbfa2t3 cbfa2t3,LOC102789151 other upstream 3254390 22548700 ~ 22601557 (-)

Expression


Co-expression Network