G28557


Basic Information

Item Value
gene id G28557
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19417412 ~ 19418435 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU37981
CTGTTTTAGCCTGAACTCATTGATCTGCGCAAGTGAAGCTTCCAGCTGTTTCTTCTTGTTGGATTTACCAGAGCCAGGAACAGTGCGCCGAGGTGGCTTCAGCGAGGACTTCTGGGAGCTTGTTGCAGATGAGGTCAAACCAAAGGGTTTTGCGGAGGTAGACAGCGGGAAAGTCGAGTGGGGCGGAGAGGGGACTGAGTGAGGCTTAGgggaggagcagagggagaggggcAGGTGctgtggggaggaggagggcagCAGTTTGGGAGGTTTGGGAGAGGCAGTGCTGGAGAGTGCCTTTGGAGATGTGGTGAGGGCTATGGGGGAGGAAGACGGTGAAGACTCCCTACGGGGCTGAGAGAGCAGTGCCAGGGGCTTTGAGTTGGCAGCCAGGCCAGTGGACTGGATCACACTGAAGTGTTGCTGTGGGCTCTCTGTCCAGGACCTGGAGCTGTGCAGGGCCAGCAGCGCCGTTTGGGACAAGGCAGGAGGGGAGGCAGAGCAGGGTAAGGGCACAAGGTTTGGGGGCTTGGAGGAGACCTTGTGAGCCTGGGTGTCTTTCTTGTCATGGAGCTCCCCAGAGAGTGGTCTGTCAGTCTTTGCAGTTCCAGTACCCGGTATCAAAACCTTTGTTTTCTTCCTTGTCCGCTTCTCAGAGTCTGACAATTCACTCTGTTTGTCCTCTTCTTCGTCATcctcatcgtcatcatcatcatcttcgtCATCCTCTGCTAAGTCTTCCAGATCACTGCTGAGGGACCCGTCACTTGAGCTGTCTGAGGATGTGCCTGACTCACTGTTGCTCGCCACACAAGTGTCTGCTGGCTTCTTCCGTTGCTTCTGAGTAGAGAGCAAAAAATGCAAGAATCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37981 True 871 lncRNA 0.55 2 19417412 19418435

Neighbor

gene id symbol gene type direction distance location
marchf7 LOC104963329 coding downstream 59045 19343424 ~ 19358367 (-)
psmd14 psmd14,psde,LOC107563735 coding downstream 184572 19227639 ~ 19232840 (-)
fn1b fn1,LOC103359471 coding downstream 209769 19182528 ~ 19207643 (-)
LOC120555913 prss23,LOC103365183,LOC104967790 coding downstream 388175 19025898 ~ 19029237 (-)
grpr grpr,LOC103365195 coding downstream 467142 18942607 ~ 18950270 (-)
LOC120555523 LOC103359460,LOC102291763,LOC102215599,LOC101468151 coding upstream 40736 19459171 ~ 19495413 (-)
gtf2f2a gtf2f2 coding upstream 82094 19500529 ~ 19508532 (-)
gpalpp1 gpalpp1 coding upstream 90250 19508685 ~ 19511713 (-)
LOC120556479 NA coding upstream 835278 20253713 ~ 20279186 (-)
tdrd3 tdrd3 coding upstream 1057192 20475627 ~ 20497725 (-)
G28552 NA non-coding downstream 7910 19351997 ~ 19409502 (-)
G28545 NA non-coding downstream 85897 19330490 ~ 19331515 (-)
G28516 NA non-coding downstream 123102 19292974 ~ 19294310 (-)
G28495 NA non-coding downstream 189918 19226132 ~ 19227494 (-)
G28464 NA non-coding downstream 280802 19135738 ~ 19136610 (-)
G28558 baz2b non-coding upstream 2113 19420548 ~ 19435713 (-)
G28623 LOC103359454,LOC100700192 non-coding upstream 111137 19529572 ~ 19531634 (-)
G28632 LOC102784954 non-coding upstream 131692 19550127 ~ 19551890 (-)
G28637 NA non-coding upstream 139243 19557678 ~ 19559314 (-)
LOC120556360 NA non-coding upstream 155884 19574319 ~ 19600624 (-)
LOC120555836 pcnp other downstream 291001 19123541 ~ 19126411 (-)
LOC120555695 NA other downstream 347416 19054091 ~ 19069996 (-)
G28345 NA other downstream 697393 18719372 ~ 18720019 (-)
LOC120556268 btbd1 other downstream 758753 18650029 ~ 18658659 (-)
G28269 mapk6 other downstream 996913 18416069 ~ 18420499 (-)
LOC120555658 NA other upstream 2161533 21579968 ~ 21583558 (-)
G28933 NA other upstream 2162607 21581042 ~ 21583498 (-)
gpc6a LOC101477426,LOC100710496,LOC102798074,LOC103365236,LOC102217784 other upstream 2468153 21886588 ~ 22051625 (-)
LOC120555944 LOC103365297,LOC100709700,LOC102795695,LOC102312860 other upstream 2852435 22270870 ~ 22336817 (-)
cbfa2t3 cbfa2t3,LOC102789151 other upstream 3130265 22548700 ~ 22601557 (-)

Expression


Co-expression Network