G28576 (LOC101468151,LOC102291763,LOC102215599,LOC100694597,LOC103359460,LOC102787400)


Basic Information

Item Value
gene id G28576
gene name LOC101468151,LOC102291763,LOC102215599,LOC100694597,LOC103359460,LOC102787400
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19468973 ~ 19469203 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU38008
ACGATGTCGACGTGTCCTGCAGCGACGGCCAGACAGAGGGGCGTCATGCCACTGTCAGTAGTCCCATCTACTGGCGCGCCCATTTCAAGCAGCAGAGCTACCATCTCCACATGCCCCAGGTGGGCGTGGACGGCCAGAATTGGGGCATGTCCAACCACCTCTGTACACCAGGTCACGCTAGCGCCACCTAGCATTAACAGACGACTTACCTGCAGGATGAAAAACATGAAT

Function

NR:

description
protein TANC1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38008 True 231 lncRNA 0.57 1 19468973 19469203

Neighbor

gene id symbol gene type direction distance location
wdsub1 wdsub1 coding upstream 9974 19446170 ~ 19458999 (+)
baz2ba baz2b coding upstream 24304 19373981 ~ 19444669 (+)
ly75 NA coding upstream 126396 19308338 ~ 19342577 (+)
pla2r1 pla2r1 coding upstream 163061 19277153 ~ 19305912 (+)
itgb6 itgb6 coding upstream 193168 19261291 ~ 19275805 (+)
LOC120556555 LOC103359454,LOC102294290 coding downstream 58882 19528085 ~ 19533813 (+)
LOC120556547 LOC103359454,LOC102294290,LOC100700192 coding downstream 66494 19535697 ~ 19545656 (+)
rbm26 rbm26 coding downstream 80151 19549354 ~ 19561725 (+)
obi1 NA coding downstream 136920 19606123 ~ 19613725 (+)
pou4f1 pou4f1,LOC103143517,LOC106914826 coding downstream 145642 19614845 ~ 19617452 (+)
G28575 NA non-coding upstream 310 19468304 ~ 19468663 (+)
G28574 NA non-coding upstream 730 19466628 ~ 19468243 (+)
G28573 NA non-coding upstream 2449 19466312 ~ 19466524 (+)
G28572 NA non-coding upstream 3633 19465050 ~ 19465340 (+)
G28571 NA non-coding upstream 4441 19464210 ~ 19464532 (+)
G28577 LOC104960575,LOC102787400,LOC102215599,LOC102291763 non-coding downstream 2553 19471756 ~ 19472062 (+)
G28578 NA non-coding downstream 5592 19474795 ~ 19474996 (+)
G28579 LOC103359460,LOC107082540,LOC100694597 non-coding downstream 10969 19480172 ~ 19480434 (+)
G28580 LOC103359460 non-coding downstream 17067 19486270 ~ 19486525 (+)
LOC120555526 NA non-coding downstream 27011 19496214 ~ 19500223 (+)
LOC120555697 NA other upstream 381909 19074308 ~ 19087064 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 893031 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1725525 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3982522 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 4022481 15441455 ~ 15446492 (+)
G28581 NA other downstream 18043 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 43153 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 302916 19772119 ~ 19993954 (+)
G28770 NA other downstream 1241901 20711104 ~ 20761147 (+)
G28826 NA other downstream 1927010 21396213 ~ 21403450 (+)

Expression


Co-expression Network