G28577 (LOC104960575,LOC102787400,LOC102215599,LOC102291763)


Basic Information

Item Value
gene id G28577
gene name LOC104960575,LOC102787400,LOC102215599,LOC102291763
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19471756 ~ 19472062 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU38009
CTCTGACAGCGACACAGGCACCACCAGGTAGTTTCCACCTTTCAGAGCCAGGTGCCCCTTGTGAAACAGATCCAGGGTCAGCTGAAGGTAGAGGATGGAGCCGTTGCTCCGTGTTGACAGGTGGCTGCTGAACTTGCTGAGGAGCAGCTGATCAGGGGCCGAGCCTGTGGGTGTGGTGACGTTAGCGGCGACCTGGGTGCTGCTGCTGACCCGGTGATGGATGTAGTCACTCAGGTCAGCTCCCAGATCACTGCTGTCTGGCAGGATGTCCAGAGAGATGCCAGAGAAGGGAAGAAGTGTAGTGATT

Function

NR:

description
PREDICTED: protein TANC1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38009 True 307 lncRNA 0.58 1 19471756 19472062

Neighbor

gene id symbol gene type direction distance location
wdsub1 wdsub1 coding upstream 12757 19446170 ~ 19458999 (+)
baz2ba baz2b coding upstream 27087 19373981 ~ 19444669 (+)
ly75 NA coding upstream 129179 19308338 ~ 19342577 (+)
pla2r1 pla2r1 coding upstream 165844 19277153 ~ 19305912 (+)
itgb6 itgb6 coding upstream 195951 19261291 ~ 19275805 (+)
LOC120556555 LOC103359454,LOC102294290 coding downstream 56023 19528085 ~ 19533813 (+)
LOC120556547 LOC103359454,LOC102294290,LOC100700192 coding downstream 63635 19535697 ~ 19545656 (+)
rbm26 rbm26 coding downstream 77292 19549354 ~ 19561725 (+)
obi1 NA coding downstream 134061 19606123 ~ 19613725 (+)
pou4f1 pou4f1,LOC103143517,LOC106914826 coding downstream 142783 19614845 ~ 19617452 (+)
G28576 LOC101468151,LOC102291763,LOC102215599,LOC100694597,LOC103359460,LOC102787400 non-coding upstream 2553 19468973 ~ 19469203 (+)
G28575 NA non-coding upstream 3093 19468304 ~ 19468663 (+)
G28574 NA non-coding upstream 3513 19466628 ~ 19468243 (+)
G28573 NA non-coding upstream 5232 19466312 ~ 19466524 (+)
G28572 NA non-coding upstream 6416 19465050 ~ 19465340 (+)
G28578 NA non-coding downstream 2733 19474795 ~ 19474996 (+)
G28579 LOC103359460,LOC107082540,LOC100694597 non-coding downstream 8110 19480172 ~ 19480434 (+)
G28580 LOC103359460 non-coding downstream 14208 19486270 ~ 19486525 (+)
LOC120555526 NA non-coding downstream 24152 19496214 ~ 19500223 (+)
LOC120556587 NA non-coding downstream 25676 19497738 ~ 19497873 (+)
LOC120555697 NA other upstream 384692 19074308 ~ 19087064 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 895814 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1728308 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3985305 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 4025264 15441455 ~ 15446492 (+)
G28581 NA other downstream 15184 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 40294 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 300057 19772119 ~ 19993954 (+)
G28770 NA other downstream 1239042 20711104 ~ 20761147 (+)
G28826 NA other downstream 1924151 21396213 ~ 21403450 (+)

Expression


Co-expression Network