G28578


Basic Information

Item Value
gene id G28578
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19474795 ~ 19474996 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU38010
GCAGGCTGGCTATGGGCTCCAGGATGCCCTTTCGGAAGGCAGCAATGGGGTCTTGAACGCAGGATCGCAGGCTGAGTGTGTTTTGTAGGTGAGGCTCTTGTACCAGCAGCTCCCTGTACGGGGCGAGCTGTGGCGCTCTGGCCAATAGGGCGGCGACACTGTGCACAAACTCTGGTACCAGGCAGGTGTAGGTGTTGTCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38010 True 202 lncRNA 0.60 1 19474795 19474996

Neighbor

gene id symbol gene type direction distance location
wdsub1 wdsub1 coding upstream 15796 19446170 ~ 19458999 (+)
baz2ba baz2b coding upstream 30126 19373981 ~ 19444669 (+)
ly75 NA coding upstream 132218 19308338 ~ 19342577 (+)
pla2r1 pla2r1 coding upstream 168883 19277153 ~ 19305912 (+)
itgb6 itgb6 coding upstream 198990 19261291 ~ 19275805 (+)
LOC120556555 LOC103359454,LOC102294290 coding downstream 53089 19528085 ~ 19533813 (+)
LOC120556547 LOC103359454,LOC102294290,LOC100700192 coding downstream 60701 19535697 ~ 19545656 (+)
rbm26 rbm26 coding downstream 74358 19549354 ~ 19561725 (+)
obi1 NA coding downstream 131127 19606123 ~ 19613725 (+)
pou4f1 pou4f1,LOC103143517,LOC106914826 coding downstream 139849 19614845 ~ 19617452 (+)
G28577 LOC104960575,LOC102787400,LOC102215599,LOC102291763 non-coding upstream 2733 19471756 ~ 19472062 (+)
G28576 LOC101468151,LOC102291763,LOC102215599,LOC100694597,LOC103359460,LOC102787400 non-coding upstream 5592 19468973 ~ 19469203 (+)
G28575 NA non-coding upstream 6132 19468304 ~ 19468663 (+)
G28574 NA non-coding upstream 6552 19466628 ~ 19468243 (+)
G28573 NA non-coding upstream 8271 19466312 ~ 19466524 (+)
G28579 LOC103359460,LOC107082540,LOC100694597 non-coding downstream 5176 19480172 ~ 19480434 (+)
G28580 LOC103359460 non-coding downstream 11274 19486270 ~ 19486525 (+)
LOC120555526 NA non-coding downstream 21218 19496214 ~ 19500223 (+)
LOC120556587 NA non-coding downstream 22742 19497738 ~ 19497873 (+)
LOC120556586 NA non-coding downstream 23097 19498093 ~ 19498224 (+)
LOC120555697 NA other upstream 387731 19074308 ~ 19087064 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 898853 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1731347 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3988344 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 4028303 15441455 ~ 15446492 (+)
G28581 NA other downstream 12250 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 37360 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 297123 19772119 ~ 19993954 (+)
G28770 NA other downstream 1236108 20711104 ~ 20761147 (+)
G28826 NA other downstream 1921217 21396213 ~ 21403450 (+)

Expression


Co-expression Network