G28674 (pcdh9)


Basic Information

Item Value
gene id G28674
gene name pcdh9
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19991932 ~ 19993954 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU38120
CATGATTAAAACATTTATTGCAGTAGCTGTATACCTGTAGAGTAACAAGGATTAACTGTTTCAGTATCTGTGATGTCAAACACCCTCACAAACTGACAAACATACCGCGATAAGCAAATCACTCCATCCCACTTAACTTCTTTATATTGTGACATAAATatgaaagtgctttacaaacTGAATGTCTCCTTAATGCACAAATCAACTCTAttccaacaaaataaaattacacAAAAAGGATCAAGTTAATTTTTAAAAGCTATATCTTTTAGCATGCTATTGCATTGTGTAACTTGATTTCCATGCTGTGGAATAAAACCAAGCTTTTCAGACAGTGGAATGACAGATGATCTTTCCCGGTTACCCATTATCTGCACAtgcctttgtgtttttctttagtACCAACGACTTGATTTTGTACTTTAATATCTGTGTGATTTTGTCTCTAAATTTGGCAAACATTTAATGCATAAGGCATTTGATTATCTGACAGGATAGTCTTTGTAGCCAACATGTTCTCATCATTTAAATAAGCACAATTCAGTGTTTGAAGAAACATCATGAAGGCACAGTGATTAAAGTCTTATCTTAACCTGTGTTTTCTTACGTATGGAAAATAATATGTGgaaacaatatatacacatatgtcAATAAATTGCAGGTACTACTGAGGGATTGCACTCAGTTAAATCACAATTTGAATAAAATCTATACAGTAATAAGATCAACATTAGATAAAACATTTAGCCATTTACAAATATATTGCTATTTAATTGTACTTTCAAAATCAGTTTATAGAGGAGAGCTTTCAGAGcttttcatttttataatgCACATATTGAGCAATGACATCCTTCAtacaaaatgttgttttttttcaaaaaggtttGCCTGTGGTTTTGCAGTGcttaaataaaatgattatgAAATATGGGCAACACTGAGTATACTAGGGGAATTTAAAATCAAGCATTGGGTTTTTAAACAATTAGGTAAATGTTTTCTTGTTGTACATTATGTCACATTATAGATCTTGGTCTAGTTGAAATCCCAAATCCTGATGACAAGCCATCATGATGACAACAGTCAAGAACTGTCCTATTCACTGTGGTTATTACGGGTACATGATAGTGGTTAATAAGTCTTatttacaaacacacagacaatgaCAGAATAAACAAGTGTCCACTAACAGTGTTATTAGAACAACACTTTCTGAAATGTAATTCCATTTTCTTTGACTGTGTTGATTAATATAGTCCTGAACAACTCAATAACAACCACACCACAAACATTTGTATATACTGGTCAGCCAtagtagtcttttttttttcttgtaatttgttttcattttctccatttGACACATGTCCTTCATCCACTTGTCCAAATCACACACAAAGTGAACAGGACATTTTATGTTGAAGAAATCCATGGAGAGTCATAAAAAAGAGGTTTCCTCTAGAGCCATAGTAAAGTTGTATTGTAGAGAACACAGCATAAGCACTATAGTTTTGTGGCCTACATAGTACATGTGGCTATCACACTGCAGAAGCATCAACGTAAGTGGGAAGAGATgaaacaagaaagaaaacaattaaCAGGAGAGGGGCTCAGGTGGCCGTCTCACAGCACAGAAGCAAAGTCCGTCTTATAGCTGTTGGTCCTTGGGGCTGTCTGGGCAGGAGGCTGGCTGGCAGGACTTCAGACTTACCAGTGGAATATCAGCCATGCCACTGTTGGTGAAGTGTCCCTCTCCACTCCCAAACTGCTTCCTGTCACCAAAATGCTCTGACCGCCCACTCTCATTTTTCCAGGTTCTGGTCAGATTATGTCCATTTAGAAGTTTTTCCTTGGGACCCCACTCTCTCTGAGACCCAAAGCTAGACACAGGGGATTTGGGCTGATGGTATGTTCCCAATGTTGGGGGCATCCAGCAGTTGTCTGAATGTCCCAGGACTAGGCATTCCTGTGTGCACATCTCTGTAGCTTCCACTAGGCCACGAGGTCCCAGGGGTCCATc

Function

symbol description
pcdh9 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system.

NR:

description
PREDICTED: protocadherin-9 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38120 True 2023 lncRNA 0.37 1 19991932 19993954

Neighbor

gene id symbol gene type direction distance location
gpalpp1 gpalpp1 coding downstream 480219 19508685 ~ 19511713 (-)
gtf2f2a gtf2f2 coding downstream 483400 19500529 ~ 19508532 (-)
LOC120555523 LOC103359460,LOC102291763,LOC102215599,LOC101468151 coding downstream 496519 19459171 ~ 19495413 (-)
marchf7 LOC104963329 coding downstream 633565 19343424 ~ 19358367 (-)
psmd14 psmd14,psde,LOC107563735 coding downstream 759092 19227639 ~ 19232840 (-)
LOC120556479 NA coding upstream 259759 20253713 ~ 20279186 (-)
tdrd3 tdrd3 coding upstream 481673 20475627 ~ 20497725 (-)
pcdh17 LOC104926281,LOC104949434 coding upstream 926990 20920944 ~ 20990225 (-)
LOC120556394 LOC104958904,LOC103352838,LOC105933796,LOC103378628,LOC107088303,LOC107687747 coding upstream 1358577 21352531 ~ 21362696 (-)
txnl4b txnl4b coding upstream 1374958 21368912 ~ 21371958 (-)
G28670 NA non-coding downstream 67934 19923735 ~ 19923998 (-)
LOC120556360 NA non-coding downstream 391308 19574319 ~ 19600624 (-)
G28637 NA non-coding downstream 432618 19557678 ~ 19559314 (-)
G28632 LOC102784954 non-coding downstream 440042 19550127 ~ 19551890 (-)
G28623 LOC103359454,LOC100700192 non-coding downstream 460298 19529572 ~ 19531634 (-)
G28677 NA non-coding upstream 68579 20062533 ~ 20063645 (-)
G28678 NA non-coding upstream 70416 20064370 ~ 20064710 (-)
G28697 NA non-coding upstream 120069 20114023 ~ 20114362 (-)
LOC120556571 NA non-coding upstream 147279 20141233 ~ 20315422 (-)
G28722 LOC103376870 non-coding upstream 362093 20356047 ~ 20356344 (-)
LOC120555836 pcnp other downstream 865521 19123541 ~ 19126411 (-)
LOC120555695 NA other downstream 921936 19054091 ~ 19069996 (-)
G28345 NA other downstream 1271913 18719372 ~ 18720019 (-)
LOC120556268 btbd1 other downstream 1333273 18650029 ~ 18658659 (-)
G28269 mapk6 other downstream 1571433 18416069 ~ 18420499 (-)
LOC120555658 NA other upstream 1586014 21579968 ~ 21583558 (-)
G28933 NA other upstream 1587088 21581042 ~ 21583498 (-)
gpc6a LOC101477426,LOC100710496,LOC102798074,LOC103365236,LOC102217784 other upstream 1892634 21886588 ~ 22051625 (-)
LOC120555944 LOC103365297,LOC100709700,LOC102795695,LOC102312860 other upstream 2276916 22270870 ~ 22336817 (-)
cbfa2t3 cbfa2t3,LOC102789151 other upstream 2554746 22548700 ~ 22601557 (-)

Expression


Co-expression Network