G28812


Basic Information

Item Value
gene id G28812
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21357332 ~ 21456540 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU38282
aaaaaaaaataaaaaataactcGTCAAGCACTATATTCTGGCATTCATTCATCagaaaactagaaaatgatACATTACAGAGGAAGGTAAAATAAAACTGGAGCCCTTTTGGCATTCTCAGTCACAATGCTCCTgacattctttgtttttttttattgtgttttgattTGCTCAGCACCTATAaaatcatattaaaaaaaacagagtccCTAAAGATTTATGATACTTTGCTCTCATACTTGTGTATTTGTCGCTCAAAACCTTTTAGGAAACAGATGAAGTCGAGAGactcacattacattttgactTTGGATCAACTTAAATGTGCAGAAAACCTCAGTGAGCAAAAGgtagtttttgttttctgtcttctATAAAGCATTGTACAGTCACATTATTTACATATTCAGTATATTACAGCGCACTCTTTTTACTCTCAGTAGCTTGTGTGGTGCGTTTGATGCAGTgctcactctctctccttcaAGGAGAGGGCCCCTTCCTGTCTCCCTGTGCTTCTGAGTCTAATCTATCATCCTCAGGTCGGTATATGGCAGGTATTAAATGTGACTGGGTGATTCTAAGGGAAAGAAGGGGCCTTTGTGACAAAGTTAGTGATTGAAGATTATTGGGAATCAGGGTGTCAGTCTGTTCTTTAAAAGACGGTAACACTCTAAAATGCACAGGTGGTAATGCATAGTGTATTAACTGCAATGAGTACAACATTTCATTAAgcattagttttgtttgtgtgttacagTACTGCACCTTTGTGAAATGATTCCCCGGTTTTCGAGGGAAGCTATTGTAAAGTTTGGGTTGGTTGTTCTTTTTAGGCACATGGTTGATTTTTAAGGTTGCAGGCAGACATGGAGTGCTGCTTTTAGTCCAGAGGGAATCAAGAAAATGGCGTCACGCGCACACGCAGTCCACTGCTACCTGCAACAATGTGCGAGGTTTTCAACAGAACACAAAGTTGTGCCTAACACCATGCCACCCCTGCTGTGGTGACGGATGTTGATGCATCTTTTTAGGAGCAAATAAGATTGATTTAGTCCCCAATCGAGCCATGAAGTCATTATGCACCAAACACTCATGAAGATCTGAGCACCTATTCACACATTTTCTCTGAGTAGGGTAGCTGATGAAGGACTATTTATCTGGTCCCCATATTTTCAGTTGATCAGATTCTACATGAGCACTTGATTATTTCAAGCGTAGTGGGCACGGGCCATAGGTGAACTGGATGTAAGCAACATGACCACAGCTCTAGCAGCTGTGTTGCTGCAGAAAAGAGTCACGCTGCCTACCAAGTTCCAGTCAGATCTGCATTTAAGCACAGGATGCCAGGCGTAGCAGGCTGACCCAAGGCCAAAAATTTGATATTGATCTAAATAAGGCCCTGTGGGCAGTTTTTGAGGCAATGTTGTGCAGCATGTATTCCCATATCTTTTGCCAAGTACAGGGGACATTGCTCATTGCCTGACCAACTGTCTTAATGAGTCATTATACTGAGAATACTGTGAAAATCCCTGCAAATGCCTCTAGGCAGCAGTGTCATCACAGTAAAAGGGCAGGGTGATCCTGGGCTAAGGCTCCAGCTGAACCACGACACCTGGtccagctgtttgttttttaaacattccaATCTAAAACGTATCTCCATTGGTCAAAGcttttataaatatattggaAATAATCCTTATTGCCTCAATGAACTGCTCATGGATCAGTTTTGGCAGACTAGTGCGCTGGTCACTGGTGAGAGTCCAGCAGGGGGCAGGAGTGTGAGCGGATGTCGTTGTGTTTGTGGATGGCCTGGTCCAAGTCCAGAGACTGTCCGTTAACACTGACCTCCATACAGCCCCTGTAGGGCGCCGACACCAGCGTGGACACCAGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38282 True 1902 lncRNA 0.43 2 21357332 21456540

Neighbor

gene id symbol gene type direction distance location
nkpd1 LOC104962748 coding upstream 5268 21331153 ~ 21352064 (+)
LOC120556481 NA coding upstream 69358 21286843 ~ 21287974 (+)
LOC120555780 diaph3 coding upstream 664358 20504098 ~ 20692974 (+)
LOC120555422 pcdh20 coding upstream 910559 20442399 ~ 20446773 (+)
pou4f1 pou4f1,LOC103143517,LOC106914826 coding upstream 1739880 19614845 ~ 19617452 (+)
adprhl1 adprhl1,LOC102790835 coding downstream 148577 21605117 ~ 21613287 (+)
grtp1a grtp1 coding downstream 158161 21614701 ~ 21626517 (+)
tgfbrap1 tgfbrap1 coding downstream 194205 21650745 ~ 21667717 (+)
mrpl16 mrpl16,LOC102799737 coding downstream 211978 21668518 ~ 21674299 (+)
LOC120556067 NA coding downstream 217884 21674424 ~ 21681765 (+)
G28804 NA non-coding upstream 35707 21321312 ~ 21321625 (+)
LOC120555568 NA non-coding upstream 214142 21142725 ~ 21143190 (+)
G28792 NA non-coding upstream 283577 21073541 ~ 21073755 (+)
G28778 NA non-coding upstream 530855 20826224 ~ 20826477 (+)
G28777 NA non-coding upstream 559661 20797412 ~ 20797671 (+)
G28875 NA non-coding downstream 159176 21615716 ~ 21616158 (+)
G28880 cul4a non-coding downstream 179991 21636531 ~ 21638081 (+)
G28976 NA non-coding downstream 261948 21718488 ~ 21718824 (+)
G28990 NA non-coding downstream 430049 21886589 ~ 21889549 (+)
G29004 NA non-coding downstream 627405 22083945 ~ 22084401 (+)
G28770 NA other upstream 596185 20711104 ~ 20761147 (+)
LOC120555792 pcdh9,LOC102784100 other upstream 1363378 19772119 ~ 19993954 (+)
ercc3 ercc3 other upstream 1837114 19512356 ~ 19520218 (+)
G28581 NA other upstream 1869799 19487246 ~ 19487533 (+)
LOC120555697 NA other upstream 2270268 19074308 ~ 19087064 (+)
tpp2 tpp2 other downstream 69052 21525592 ~ 21562814 (+)
dcun1d2b dcun1d2,LOC102792160 other downstream 139791 21596331 ~ 21603906 (+)
gpc5a gpc5,LOC103365231 other downstream 263494 21720034 ~ 21872025 (+)
ankrd11 ankrd11 other downstream 1308179 22764719 ~ 22895007 (+)
LOC120555548 LOC103365626,LOC104942698 other downstream 1525243 22981783 ~ 22994164 (+)

Expression


Co-expression Network