LOC120556583


Basic Information

Item Value
gene id LOC120556583
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21409652 ~ 21413209 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU38321
cggctcactgtgtttccgcacggaggattattactagcgcacaagaggtttgcgcttctgcggacacaagactgacggcccatattacaaatgaaggaagacgaaaatagcgagggtctaaaagggagagacaggcgagagaaaacgacagaaagtttgggatcattttaagctgcaaacatgctgctacatcacctctgtaacaaacctccagtgtactcatccattccacggagccaacccgacacaagGTGTACCTGCTGGTTCTCAGCGTCACCACCCTCAGTTTGCTGCTGGCACCGGTGCTGTGGAGAGTTACCACACACAAATGGGTTTCCCGGGCAGAACGCAAAACCGTTACATGACCAGACCGGCGTCAAGGCCCAAAGGTTCCCGTCTAACTCCCACAAAAAGAGTCGGAACGGTTGGACCaaatcttctttttcttcttctttgcaaCATCGCTGAACCCCTCCACTCTTCGTAAAAGCTGGACATTATCTGTGACTTTAAAGAATCCTTGATAAAAAAGCACACCCGCTCGACAGTCCAGTGGAGAAGCAAAAGTACTTGATATCTTTCCGGCTCTGTTGTGTTTAATGCACTTATGAAGATAAACAGATACGTTCCCTCTCTACTGTCTGTAATAATGAATTTCAATGgaattccttttctttttttccgaTTCTCAGTGGTTTCTGTACTTTCAACCCAAGGTTTTTCTGATTACTTGTAACAATCACAAATCTAAATTCATTCTCATTTTTCATGTAAGGGTAaaatatttagattttatttttatttttttatttattagggAAAATGATTCTGTAATTTATATTGCCTCATTTGACCATCTCACATTACTATTACTGACTTTTGGGATATCGCTTGTCTGGCTTACCCAATGACGTACAGTGCATCGCCGGATGTCAGGCCCCTTCCGCTATGTCCGCTATGATTATACAAGGGCACTGTTGCTGCATCCGGGGCTTAGGGCCgcctaagacgattgtgattggtttaaagaaatacaaacaacctagaggtgtagccagaccatactcaaGCACTGACACAGAGCTGTGGTGATAGGTCTGGCTATTCGAGGCTAGGCTATTGCGAATGTCCGATTCAAATCCTTACTGAAGTGCAAACCTTCTATCTGCTGTATTTAATAGATGACACTCATAGATTATTGTAATCATTGTACTACTGTGAATTAAGCTGTGAGGACACTCTTCAGTGTTACCTAAAAACTACAACAATTCCTTTTACAAAGTCTGTATTCATACACGTTAGTAAAAGGTAAGCAATggagatgaaaaaaaatagtAGAGAGCATCTCACAAGAACAGAAAATGCTCGTCAGAAAAGGAAAACCTGCACTAGTTACCGTGGAATGTCAAATGTATGTGCCTGCTCAACACTGCTCCGCATTAAAAGCGAGGACCTTGGT
>TU38322
tgcctcatggactcatggcagtgtgctacccatCTGGCCCGTTAtgtgagagctaatcagcagaACTGGACCGAGTAAACTTAATAAAAACTATCTGTTTTATTCATGCagctctaaataaaaaaagtttgagtACATTTTGGcaagcaattttttttatacaacctTCGTTAAATAAAAGTATGGTAAAGAGAGACGTATCTCTCTGCCTGTCAGACGCTGCgctcccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatttaccCTTTAAACTTAgctctattttcttttttatgtgtACCTATGTCCATAAAAATCTTCTTGAGGTCGTCAACGTGGAATAAAATCTAAAAGTCATGATACAGTATTAAAACAGTGTAGGTGTCAGTGATTGTGCTCATTTTAAGTCGGAAATGCTTATGATAGTAATAACTAATGATTAGATTTTCtcaacttttgactactttcTCTCTGCTCAGGTGTACCTGCTGGTTCTCAGCGTCACCACCCTCAGTTTGCTGCTGGCACCGGTGCTGTGGAGAGTTACCACACACAAATGGGTTTCCCGGGCAGAACGCAAAACCGTTACATGACCAGACCGGCGTCAAGGCCCAAAGGTTCCCGTCTAACTCCCACAAAAAGAGTCGGAACGGTTGGACCaaatcttctttttcttcttctttgcaaCATCGCTGAACCCCTCCACTCTTCGTAAAAGCTGGACATTATCTGTGACTTTAAAGAATCCTTGATAAAAAAGCACACCCGCTCGACAGTCCAGTGGAGAAGCAAAAGTACTTGATATCTTTCCGGCTCTGTTGTGTTTAATGCACTTATGAAGATAAACAGATACGTTCCCTCTCTACTGTCTGTAATAATGAATTTCAATGgaattccttttctttttttccgaTTCTCAGTGGTTTCTGTACTTTCAACCCAAGGTTTTTCTGATTACTTGTAACAATCACAAATCTAAATTCATTCTCATTTTTCATGTAAGGGTAaaatatttagattttatttttatttttttatttattagggAAAATGATTCTGTAATTTATATTGCCTCATTTGACCATCTCACATTACTATTACTGACTTTTGGGATATCGCTTGTCTGGCTTACCCAATGACGTACAGTGCATCGCCGGATGTCAGGCCCCTTCCGCTATGTCCGCTATGATTATACAAGGGCACTGTTGCTGCATCCGGGGCTTAGGGCCgcctaagacgattgtgattggtttaaagaaatacaaacaacctagaggtgtagccagaccatactcaaGCACTGACACAGAGCTGTGGTGATAGGTCTGGCTATTCGAGGCTAGGCTATTGCGAATGTCCGATTCAAATCCTTACTGAAGTGCAAACCTTCTATCTGCTGTATTTAATAGATGACACTCATAGATTATTGTAATCATTGTACTACTGTGAATTAAGCTGTGAGGACACTCTTCAGTGTTACCTAAAAACTACAACAATTCCTTTTACAAAGTCTGTATTCATACACGTTAGTAAAAGGTAAGCAATggagatgaaaaaaaatagtAGAGAGCATCTCACAAGAACAGAAAATGCTCGTCAGAAAAGGAAAACCTGCACTAGTTACCGTGGAATGTCAAATGTATGTGCCTGCTCAACACTGCTCCGCATTAAAAGCGAGGACCTTGGT
>XR_005638869.1
aacaaacctccagtgtactcatccattccacggagccaacccgacacaagGTGTACCTGCTGGTTCTCAGCGTCACCACCCTCAGTTTGCTGCTGGCACCGGTGCTGTGGAGAGTTACCACACACAAATGGGTTTCCCGGGCAGAACGCAAAACCGTTACATGACCAGACCGGCGTCAAGGCCCAAAGGTTCCCGTCTAACTCCCACAAAAAGAGTCGGAACGGTTGGACCaaatcttctttttcttcttctttgcaaCATCGCTGAACCCCTCCACTCTTCGTAAAAGCTGGACATTATCTGTGACTTTAAAGAATCCTTGATAAAAAAGCACACCCGCTCGACAGTCCAGTGGAGAAGCAAAAGTACTTGATATCTTTCCGGCTCTGTTGTGTTTAATGCACTTATGAAGATAAACAGATACGTTCCCTCTCTACTGTCTGTAATAATGAATTTCAATGgaattccttttctttttttccgaTTCTCAGTGGTTTCTGTACTTTCAACCCAAGGTTTTTCTGATTACTTGTAACAATCACAAATCTAAATTCATTCTCATTTTTCATGTAAGGGTAaaatatttagattttatttttatttttttatttattagggAAAATGATTCTGTAATTTATATTGCCTCATTTGACCATCTCACATTACTATTACTGACTTTTGGGATATCGCTTGTCTGGCTTACCCAATGACGTACAGTGCATCGCCGGATGTCAGGCCCCTTCCGCTATGTCCGCTATGATTATACAAGGGCACTGTTGCTGCATCCGGGGCTTAGGGCCgcctaagacgattgtgattggtttaaagaaatacaaacaacctagaggtgtagccagaccatactcaaGCACTGACACAGAGCTGTGGTGATAGGTCTGGCTATTCGAGGCTAGGCTATTGCGAATGTCCGATTCAAATCCTTACTGAAGTGCAAACCTTCTATCTGCTGTATTTAATAGATGACACTCATAGATTATTGTAATCATTGTACTACTGTGAATTAAGCTGTGAGGACACTCTTCAGTGTTACCTAAAAACTACAACAATTCCTTTTACAAAGTCTGTATTCATACACGTTAGTAAAAGGTAAGCAATggagatgaaaaaaaatagtAGAGAGCATCTCACAAGAACAGAAAATGCTCGTCAGAAAAGGAAAACCTGCACTAGTTACCGTGGAATGTCAAATGTATGTGCCTGCTCAACACTGCTCCGCATTAAAAGCGAGGACCTTGGTGGCTTCTCCTGCTGTTAATGTCTTCATCTTTCATAATGTGCAATGTGTAAGTGTACTGTCACGTACATGTTatgctttattttatgtttcacATTTTTCTGCAGTATGTCCACACACAGTGGTATTTTTTCTTAACTTTGTGTAGTTTACATacttgtgttggtggccatggcgCAAAGAGATgctgtttttgtcaaatgttcaaatttttaaattgttgaattcattcatttatttattaaaaataagatGACTCAGATATATTTGCTTGATTTAGTCTGTATTTACTATGTTCTTAGAATGCAGTGCTTTCTCTGGAGAACATGAAATTGTATTGTCTAATAAATTGACCAATTGTTTATGAGTAAAACGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38321 False 1459 lncRNA 0.43 2 21409652 21412834
TU38322 True 1704 lncRNA 0.40 2 21411053 21412834
XR_005638869.1 False 1633 lncRNA 0.39 2 21409853 21413209

Neighbor

gene id symbol gene type direction distance location
ercc5 ercc5,LOC104958986 coding upstream 19105 21381209 ~ 21390547 (+)
trmt10c NA coding upstream 35510 21372157 ~ 21374142 (+)
nkpd1 LOC104962748 coding upstream 57588 21331153 ~ 21352064 (+)
LOC120556481 NA coding upstream 121678 21286843 ~ 21287974 (+)
LOC120555780 diaph3 coding upstream 716678 20504098 ~ 20692974 (+)
LOC120556135 tmem255b coding downstream 21050 21434259 ~ 21453303 (+)
adprhl1 adprhl1,LOC102790835 coding downstream 191908 21605117 ~ 21613287 (+)
grtp1a grtp1 coding downstream 201492 21614701 ~ 21626517 (+)
tgfbrap1 tgfbrap1 coding downstream 237536 21650745 ~ 21667717 (+)
mrpl16 mrpl16,LOC102799737 coding downstream 255309 21668518 ~ 21674299 (+)
G28804 NA non-coding upstream 88027 21321312 ~ 21321625 (+)
LOC120555568 NA non-coding upstream 266462 21142725 ~ 21143190 (+)
G28792 NA non-coding upstream 335897 21073541 ~ 21073755 (+)
G28778 NA non-coding upstream 583175 20826224 ~ 20826477 (+)
G28777 NA non-coding upstream 611981 20797412 ~ 20797671 (+)
G28875 NA non-coding downstream 202507 21615716 ~ 21616158 (+)
G28880 cul4a non-coding downstream 223322 21636531 ~ 21638081 (+)
G28976 NA non-coding downstream 305279 21718488 ~ 21718824 (+)
G28990 NA non-coding downstream 473380 21886589 ~ 21889549 (+)
G29004 NA non-coding downstream 670736 22083945 ~ 22084401 (+)
G28826 NA other upstream 6202 21396213 ~ 21403450 (+)
G28770 NA other upstream 648505 20711104 ~ 20761147 (+)
LOC120555792 pcdh9,LOC102784100 other upstream 1415698 19772119 ~ 19993954 (+)
ercc3 ercc3 other upstream 1889434 19512356 ~ 19520218 (+)
G28581 NA other upstream 1922119 19487246 ~ 19487533 (+)
grk1a grk1 other downstream 7901 21421110 ~ 21433147 (+)
tpp2 tpp2 other downstream 112383 21525592 ~ 21562814 (+)
dcun1d2b dcun1d2,LOC102792160 other downstream 183122 21596331 ~ 21603906 (+)
gpc5a gpc5,LOC103365231 other downstream 306825 21720034 ~ 21872025 (+)
ankrd11 ankrd11 other downstream 1351510 22764719 ~ 22895007 (+)

Expression


Co-expression Network