grk1a (grk1)


Basic Information

Item Value
gene id grk1a
gene name grk1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21421110 ~ 21433147 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU38327
ctctcacctCAGGTTTCATGGCTCCAGAGCTGCTGAAAGGAGAAGAGTATGACTGCTCCGTAGATTACTTTACTCTGGGGGTCACTCTGTATGAGTTCATGGCCGCCAAGGGACCCTTCAGGACACGAGGAGAGAaggtaaatatactgtatgaccTGTTTTTCCCATTCCCAATCCACGTTTGgagctgtttttatttatttattggttgTGTGCTCGAAAGATGTTTTGTAAATTCGTTTGGCTCTCTGCCTCTTTCCTCACAGTCTTCTTAGCTCTTACATCTTTCTGTGGCGATGTGTAAAGCTTTTACTTTACTGTGTGATAATACAGTAACAGTCTTTTTAAGCTGTGATGTCTCAACTTTGCCCACTTGTGGCCTGTTGCAGATTCAGCTCTGAAATATGAAGccctcattttcttttcttttttaaagattattttttggggcattttaggcctttaattcgaCAGGACAGATGatgacatgaaaggggagagagaaggggaatgacacagcctgacaagccagacccacatcaagatgttgggtctgggaactcaccattggcagggctcaatccgaggggcgggataaacggttgtctttcaaattccctctgaagtcatagccaaccagagcaatgcTAGTTGatggattaaacttttgccgtatccggtcggcaaaactctgaacacatcttacttttttaagaatgacttcagtgcttaactccaagtcttccagagtcgcggccaaggCCGATATAAAAGACCGCtattcttctttgttttcaagtagcagggaattcatgcGGAACCgccgcaactctgccgtccttatgttaatAAAGCTTGCCCACCagctctatacacaatgtgattggcctgaccagaatttgttttttctaGCTCGCAAGCCAgtggagagttgctagactgaccctggctgcaaattacatttgctgccactagggtgcgtctagatttctagactaggaatgacatgcagcaaagggctgcaggtcggagttgaacctgtgaccgctgcgtcgaggagtaaacctatatatatgtgcgcctgctctaccaactgaggtAACCCGGCCATGTATGAAGACCCTCAtttaaccagtggtggaagaagtactcataTTTGTCATATAAAGTAGTAAACATGCATTACATGTtcggtccatatgtgtttgtgttatgtggtgaatgtgaaaatgaactgctacctcctttgtcagctctagccactgaaaagaaataagcagagaaatcaggccaattacaaaagctggtcagtctgacgtggtgttaCCTGAGCTCATTCCTGTTCATTAGCttgcccagttgcgctgggtaaaggatgctgatagccagactctcattggctagctgttagccaatcagagtcaagcaccttagcttgttgaatattaatgagaactggcacaaatcgagctgagtcttcctgtaggctttctataccacgctagaatggcttgaaacaatgtaaccaaggcattttttccacaaaaaatgttacagagtccacggTAGAACTttagacattaccacaaagtaatgaaacaCGTGTGGCAGGGTACCTTTAAGCATGTATGTGCATTAATGTTGTAATATTTACTTTATAGGGGATTTAAATTTTTTAGATAATATTTGGATGATGTGCATGAATACTCTGAATTTAAATGCaggtaaataataaataagacgTGCAGGTAAATGCCTGATGGTTATTCTCTTTAAAGCTTTCCTTTCTGGTACAAATCTTTCTCTCCTGTACTTTGTGTTGTTCCGAGGTGGAGAATAAGGTGTTGAAGAAGCGCATTCTGAATGATCCAGTAACATATCCAGAGAAGTTCAGCGAGAACGCCCGGTCCATCTGTGAGGGTTTGCTGTTCAAAGAGTTCGACAAGAGGCTCGGCTTCAAAAACGGATCGTGTGACGAGATCAGGGCGCACGCCTTCTTCAGCGAGATCAACTGGAGGAAACTCAATGCAGGGATCCTCAGACCTCCTTTCGTGCCGGACTCAAAGACAGTTTATGCCAAGAACATTGACGATGTCGGGGCCTTCTCCACGGCTAAAGGCGTGCAGCTTGAAGACAAGGACAATGATTTTTTTGATGAGTTCGCCTCGGGGAACATCTCCATCCCCTGGCAGGAAGAGATGATCGAGATGGGGATCTACGGCGAGCTCACAGTCTGGGGAGCTGACGGCGCTTTGCCCAACGACCTGCGGCGTGAATCCATCCTGGAGCAGCCACACAAGTCTTCCACATGCTCAGTGTCGTAAGAGGCTACAGTGAATGAACAGTTCATTTCTTACTTCAGACATCAATACATTTTAGTGATGAGGCTCAGTTTGGAGGTGAATGAATGTCTCTAATTTTAGTTTCTAATAGATAATTAGATACTTACAGTACTACCTGCACTTTTTTGGCCATTATTTTGGTTTTTACTTTTAACCCTTTTCTGTAaaattgtgttgtttttatgtaacttttttttttctttattgctGCACACTTTAAACTTATTATCTAATTGTCTGTTTCTAACATTGTTGGATTTTTTGAAGTAGGAAtgatcattatatatatatatatatatatgtatgtgtgtgtgtgtgtgtgtgtatatatatgtatatatatgtatgtgtatatatatgtgtatgtatgtgtgtgcgtgcgtgactGAACTGCAAGTTAAAAAGCATGTCTTTTTGCAGCTTCAGACGTGTAAATTGACTTGTATCCATTACTGCAGAGATGTGTtatcaaatttaaataaatatttttactttaaaa
>XM_039796068.1
tgaaagGGACTCTCAGTTTTAATGATTGAGGGAAACACTGAGCACTCTGTGGCTGTCCGCAGACAGTCAGATGTACAGTATTCTCTGCTTCTGAAGAGGAAATCCTCATCTCATTTCTATCGGGAAATTAGTCATATATCATCTGCTTCTCTGCCACTTTTCACTTCTTTTAGCTGTCTGGTCATTTCTGCGCTCATTTCCAAACTTTCACCATCACTTCTGTTTCCTTGTAACTCCTTTTTCTCTGTAGCTGTTTGCTGTATCTCACTCATTTCTCTGGCCCTCCTCCTCACTTTTTTCGACTGGGTCACCATGGATATTGGTGGCCTGACAACAGTGGTGGCCAACTCTGCCTACATCTCGGCCCGCGGGAGCTTTGATGGCGCTGCCAACTCTGCATCCAGCAGAGACAAGAAGTACCACTCCCGCCTGAAGCTGCCTCACATCACAGTGTGTGAAGGCCTGCGGGAGACTTTAGATTTGGGCTTCCAGTCCGTCTGTGTGGAGCAGCCCATCGGCAAACGTCTCTTCCAGGAATTCCTAGAATCCAACAAAGACTATCAAGGCCCCTGCCGCTTGTGGAAAGATATTGAGGAATACAACATGGCTGAGGATGAAGATCGAGTCAAGAAAGCGAGCAAGATTTTGTCCCGGTACATGGAGCCTGGTGCCAAGTATTTCTGCCCCTTCCTGCCAGAAAACGGCATCACAAAGGTCAAAGAGAAACACCGAGAAGCCGGGGATGATCTTCTCAGTGAGACCATGCACAGCGTGATGGACTTTCTCAAGGAAGTGCCCTACACTTTGTTCCTGGATGGTATGTATCTGAAAAGGTTTCTGCAGTGGAAGTGGTTGGAGATGCAGCCCATAGGAGAGGATTGGTTCTTGGATTTTCGCATATTGGGGAAAGGGGGTTTTGGGGAAGTGTCTGCCTGTCAGATGAAGGCCACGGGGAAATTGTACGCTTGCAAAAAGCTCAACAAGAAGAGGCTGAAGAAGAGAAAAGGCTATGGGGGGGCGATGGTGGAGAAGAAGATCCTGGCTCGAGTTCACAGCAGGTTCATCGTCTCGTTGGCGTACGCCTTCCAGTCAAAAGCAGAGTTGTGTCTGATCATGACCATCATGAACGGAGGAGACCTGAGGTATCACATTTATAATGTGGATGAGAACAACCCGGGGTTGGATGAGCCGAGGGCCTGCTACTACGCTGCTCAGATCATCCAGGGCCTGGAGCACCTCCACCAGAAGAGGATCATCTACAGAGACCTCAAACCAGAGAACGTGCTGCTGGATAATCAAGGTAACGTCCGTATCTCTGACCTTGGTCTGGCTGTGGAGCTGGCTGATGATCAGTTCAAAATCAAGGGTTACGCCGGGACTCCAGGTTTCATGGCTCCAGAGCTGCTGAAAGGAGAAGAGTATGACTGCTCCGTAGATTACTTTACTCTGGGGGTCACTCTGTATGAGTTCATGGCCGCCAAGGGACCCTTCAGGACACGAGGAGAGAagGTGGAGAATAAGGTGTTGAAGAAGCGCATTCTGAATGATCCAGTAACATATCCAGAGAAGTTCAGCGAGAACGCCCGGTCCATCTGTGAGGGTTTGCTGTTCAAAGAGTTCGACAAGAGGCTCGGCTTCAAAAACGGATCGTGTGACGAGATCAGGGCGCACGCCTTCTTCAGCGAGATCAACTGGAGGAAACTCAATGCAGGGATCCTCAGACCTCCTTTCGTGCCGGACTCAAAGACAGTTTATGCCAAGAACATTGACGATGTCGGGGCCTTCTCCACGGCTAAAGGCGTGCAGCTTGAAGACAAGGACAATGATTTTTTTGATGAGTTCGCCTCGGGGAACATCTCCATCCCCTGGCAGGAAGAGATGATCGAGATGGGGATCTACGGCGAGCTCACAGTCTGGGGAGCTGACGGCGCTTTGCCCAACGACCTGCGGCGTGAATCCATCCTGGAGCAGCCACACAAGTCTTCCACATGCTCAGTGTCGTAAGAGGCTACAGTGAATGAACAGTTCATTTCTTACTTCAGACATCAATACATTTTAGTGATGAGGCTCAGTTTGGAGGTGAATGAATGTCTCTAATTTTAGTTTCTAATAGATAATTAGATACTTACAGTACTACCTGCACTTTTTTGGCCATTATTTTGGTTTTTACTTTTAACCCTTTTCTGTAaaattgtgttgtttttatgtaacttttttttttctttattgctGCACACTTTAAACTTATTATCTAATTGTCTGTTTCTAACATTGTTGGATTTTTTGAAGTAGGAAtgatcattatatatatatatatatatatgtatgtgtgtgtgtgtgtgtgtgtatatatatgtatatatatgtatgtgtatatatatgtgtatgtatgtgtgtgcgtgcgtgactGAACTGCAAGTTAAAAAGCATGTCTTTTTGCAGCTTCAGACGTGTAAATTGACTTGTATCCATTACTGCAGAGATGTGTtatcaaatttaaataaatatttttactttaaaa

Function

symbol description
grk1 Enables rhodopsin kinase activity. Involved in protein autophosphorylation and regulation of rhodopsin mediated signaling pathway. Predicted to be located in photoreceptor outer segment. Predicted to be active in cytoplasm. Implicated in Oguchi disease-2 and night blindness.

NR:

description
rhodopsin kinase

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38327 True 2841 lncRNA 0.42 2 21428639 21433147
XM_039796068.1 False 2521 mRNA 0.46 7 21421110 21433147

Neighbor

gene id symbol gene type direction distance location
ercc5 ercc5,LOC104958986 coding upstream 30563 21381209 ~ 21390547 (+)
trmt10c NA coding upstream 46968 21372157 ~ 21374142 (+)
nkpd1 LOC104962748 coding upstream 69046 21331153 ~ 21352064 (+)
LOC120556481 NA coding upstream 133136 21286843 ~ 21287974 (+)
LOC120555780 diaph3 coding upstream 728136 20504098 ~ 20692974 (+)
LOC120556135 tmem255b coding downstream 1112 21434259 ~ 21453303 (+)
adprhl1 adprhl1,LOC102790835 coding downstream 171970 21605117 ~ 21613287 (+)
grtp1a grtp1 coding downstream 181554 21614701 ~ 21626517 (+)
tgfbrap1 tgfbrap1 coding downstream 217598 21650745 ~ 21667717 (+)
mrpl16 mrpl16,LOC102799737 coding downstream 235371 21668518 ~ 21674299 (+)
LOC120556583 NA non-coding upstream 7901 21409652 ~ 21413209 (+)
G28804 NA non-coding upstream 99485 21321312 ~ 21321625 (+)
LOC120555568 NA non-coding upstream 277920 21142725 ~ 21143190 (+)
G28792 NA non-coding upstream 347355 21073541 ~ 21073755 (+)
G28778 NA non-coding upstream 594633 20826224 ~ 20826477 (+)
G28875 NA non-coding downstream 182569 21615716 ~ 21616158 (+)
G28880 cul4a non-coding downstream 203384 21636531 ~ 21638081 (+)
G28976 NA non-coding downstream 285341 21718488 ~ 21718824 (+)
G28990 NA non-coding downstream 453442 21886589 ~ 21889549 (+)
G29004 NA non-coding downstream 650798 22083945 ~ 22084401 (+)
G28826 NA other upstream 17660 21396213 ~ 21403450 (+)
G28770 NA other upstream 659963 20711104 ~ 20761147 (+)
LOC120555792 pcdh9,LOC102784100 other upstream 1427156 19772119 ~ 19993954 (+)
ercc3 ercc3 other upstream 1900892 19512356 ~ 19520218 (+)
G28581 NA other upstream 1933577 19487246 ~ 19487533 (+)
tpp2 tpp2 other downstream 92445 21525592 ~ 21562814 (+)
dcun1d2b dcun1d2,LOC102792160 other downstream 163184 21596331 ~ 21603906 (+)
gpc5a gpc5,LOC103365231 other downstream 286887 21720034 ~ 21872025 (+)
ankrd11 ankrd11 other downstream 1331572 22764719 ~ 22895007 (+)
LOC120555548 LOC103365626,LOC104942698 other downstream 1548636 22981783 ~ 22994164 (+)

Expression


Co-expression Network