G28990


Basic Information

Item Value
gene id G28990
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21886589 ~ 21889549 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU38517
tttttttaataaaacgtTTATTATTACCTTGGTATTATTTTCTGTATACAAGAATGTGTAACAAAAGCCGAATAAGCAATCCATTTTAGTCTTTTAAAAATGGTAAGGCATGTCTGCTTGTACAACCCTCAACTTCAGTTCCCCCAAAACACTTCAAACAGCGTGCACTGACAGCTCCAAAAATCTTAATGTGCTCCTTAGTTATCTGATTTTGCAAATCACAACAGTACCACACTCACAGCATATGTTTTAGCAAAAGTGCAGCAAACAATTAACATCAAAATGGAGAAGACCTTGCATAACACATTTTCTAAACATTCTGTAAAAAACCtaattttttcagtttttcaaatgCCAAAGAGAATAAATGagaccaaaaaagaaaagaaaaggatcACAGACAAATTAAGCGAAGCACTGAAGCATCTCAGACAGTGATACTGTCTGACCAGGGTAACGTAGCTTGTCAGGAGAGAGAGGAATACACAAGGCAGTGgaaaatgacaaacaacaaCTCATCAGAATGAGAGAAGACTGTTAGTACCGATGCAAGATCTTTGGAAAAATTCAGCCTACTTCTGAAACACCTTCACCTTGATTTACTTTCTTTACTGTATTTCAGGAACACGACCCGAAGACCTGCCTCATCCTAACTCATAAAAAACCTCTTGTTGTTGCAATCACAGATACAGGTGCATTCAACCTTTGTGTGGCTGCAGATTCTTGCTGAGTTTTCACACTTTCAAAAACATAGTCTTCATAAGTTCATGGCTCACTTCTGACCCTGACTCAGAAATATCTGCCTCCACAATGTTATTTAATACTTGAAAAGTGAATCTATATGGCTGTGTTTGACTGCAGCGATATATAACCCACTAACTTGCATTTTTACTGTATAGTTATTTAATCAATTGTAAAATCACCAAAGGACAAAGATCATCTGAATGCAACTCTGTTACTGCCTGATTTAATCTAGTTTTAGGCAACAATATGACACATCAAAATAAAAGTGCTGACAAAACATCTTTTTGTGTTCAATTCTAAAAATCAAGTGAAGATGCCTGAAGCTGAAATTGAATTATCAGTCTGAGCTTCAATGGCCCAATTTAACAGAACATGATTTTTACATGGAAGTTCCTTCATTGAAATTATCTGCTTTCCAGACTGCACTCCTGGGTGGGTAAATCCTGTTGCTGCACATCAGGTCTGGCAGAGAGTTCCTTCATTTAATATTCAGCACATTATAAATAGTTACTGCTGGATGTCCATCCTGTCTAACTACCTCTCATCTGTCAGCCCCACTAAGTTGAGATGGGGATCTGTCTGCTTTCACCTCTGCCTAACAAAGGTGGGTGGTGGGATTTCTTTGCTCATGTAAATATGATCCGGCAGAGGAGACGTGAGATATCCAAAATATCCAACACAGAAGTGTGGTAGAGTGTAACCAATGTCACTTTTGCGTAAACACTatttcagattttgagaggttGGTAAACtgtgtttactgtatgtgtgtttagttTCCATTGCACCCCTGCTTCTGTCTCATACAGACTTTGACCTTTTAAGGGCTTAACAGGCTCTCTCAGTCAGCCCAGACTAAACACTTTTTTAGTGCAATATTTCAcgtttttaatttttgtcttttctgtatttccactcaGGTTATTTAATGCACAATACAAACATTATAGAGGACCTTATGTTGATCAGTTTAGTGTTGTCTTTCCTCAGGCTTTGGTTGGATAGAGGCATGTCGCCTTTCACAATTAAGGTTTACGCACTAGTGATTTAATTGTGTCATGCTGGTTTTAGTGGGAGGCTGCTGTTTAGTCACCTTCTCCTGAAGCAGTTTTTGCAGGGAGTGAGGCGTCAAAGGTCAAATGTTTTCCCATCTGTTCTGCAGTGGAAGCTTCCTGTGGTGATTGGGGTCTCTTGTGTGAGTCATATGAGCCCACTGAGGGGAGATCTTGCTTAAGTTGCTGTCTGTGAAGACAACCATGTTGCTGCAAACTTTGGCGAATGTGGAGATCAGTCTACTTTTGTCATTTGCTCCTTTGAGGGGACCACAGAAACACTGCATTTCATCCACACCTGTAATTTGTGCCTAGGACATCATATATTTTTTGCAGGTCTTGACAGTTGCAGCTTGATGCTATTTGCACTCTTGTGTCCCATGATGCTCACAGTAGCTGTTAATTTGTCACAGCGATGGGTTTA
>TU38519
TTAAAAATGGTAAGGCATGTCTGCTTGTACAACCCTCAACTTCAGTTCCCCCAAAACACTTCAAACAGCGTGCACTGACAGCTCCAAAAATCTTAATGTGCTCCTTAGTTATCTGATTTTGCAAATCACAACAGTACCACACTCACAGCATATGTTTTAGCAAAAGTGCAGCAAACAATTAACATCAAAATGGAGAAGACCTTGCATAACACATTTTCTAAACATTCTGTAAAAAACCtaattttttcagtttttcaaatgCCAAAGAGAATAAATGagaccaaaaaagaaaagaaaaggatcACAGACAAATTAAGCGAAGCACTGAAGCATCTCAGACAGTGATACTGTCTGACCAGGGTAACGTAGCTTGTCAGGAGAGAGAGGAATACACAAGGCAGTGgaaaatgacaaacaacaaCTCATCAGAATGAGAGAAGACTGTTAGTACCGATGCAAGATCTTTGGAAAAATTCAGCCTACTTCTGAAACACCTTCACCTTGATTTACTTTCTTTACTGTATTTCAGGAACACGACCCGAAGACCTGCCTCATCCTAACTCATAAAAAACCTCTTGTTGTTGCAATCACAGATACAGGTGCATTCAACCTTTGTGTGGCTGCAGATTCTTGCTGAGTTTTCACACTTTCAAAAACATAGTCTTCATAAGTTCATGGCTCACTTCTGACCCTGACTCAGAAATATCTGCCTCCACAATGTTATTTAATACTTGAAAAGTGAATCTATATGGCTGTGTTTGACTGCAGCGATATATAACCCACTAACTTGCATTTTTACTGTATAGTTATTTAATCAATTGTAAAATCACCAAAGGACAAAGATCATCTGAATGCAACTCTGTTACTGCCTGATTTAATCTAGTTTTAGGCAACAATATGACACATCAAAATAAAAGTGCTGACAAAACATCTTTTTGTGTTCAATTCTAAAAATCAAGTGAAGATGCCTGAAGCTGAAATTGAATTATCAGTCTGAGCTTCAATGGCCCAATTTAACAGAACATGATTTTTACATGGAAGTTCCTTCATTGAAATTATCTGCTTTCCAGACTGCACTCCTGGGTGGGTAAATCCTGTTGCTGCACATCAGGTCTGGCAGAGAGTTCCTTCATTTAATATTCAGCACATTATAAATAGTTACTGCTGGATGTCCATCCTGTCTAACTACCTCTCATCTGTCAGCCCCACTAAGTTGAGATGGGGATCTGTCTGCTTTCACCTCTGCCTAACAAAGGTGGGTGGTGGGATTTCTTTGCTCATGTAAATATGATCCGGCAGAGGAGACGTGAGATATCCAAAATATCCAACACAGAAGTGTGGTAGAGTGTAACCAATGTCACTTTTGCGTAAACACTatttcagattttgagaggttGGTAAACtgtgtttactgtatgtgtgtttagttTCCATTGCACCCCTGCTTCTGTCTCATACAGACTTTGACCTTTTAAGGGCTTAACAGGCTCTCTCAGTCAGCCCAGACTAAACACTTTTTTAGTGCAATATTTCAcgtttttaatttttgtcttttctgtatttccactcaGGTTATTTAATGCACAATACAAACATTATAGAGGACCTTATGTTGATCAGTTTAGTGTTGTCTTTCCTCAGGCTTTGGTTGGATAGAGGCATGTCGCCTTTCACAATTAAGGTTTACGCACTAGTGATTTAATTGTGTCATGCTGGTTTTAGTGGGAGGCTGCTGTTTAGTCACCTTCTCCTGAAGCAGTTTTTGCAGGGAGTGAGGCGTCAAAGGTCAAATGTTTTCCCATCTGTTCTGCAGTGGAAGCTTCCTGTGGTGATTGGGGTCTCTTGTGTGAGTCATATGAGCCCACTGAGGGGAGATCTTGCTTAAGTTGCTGTCTGTGAAGACAACCATGTTGCTGCAAACTTTGGCGAATGTGGAGATCAGTCTACTTTTGTCATTTGCTCCTTTGAGGGGACCACAGAAACACTGCATTTCATCCACACCTGTAATTTGTGCCTAGGACATCATATATTTTTTGCAGGTCTTGACAGTTGCAGCTTGATGCTATTTGCACTCTTGTGTCCCATGATGCTCACAGTAGCTGTTAATTTGTCACAGCGATGGGTTTAGGGAATGCCCCTGTTGAGTCAAGAGACTTACTTATTGGCTATGTAAAAGCATTTCAGGTGCTTCTGAGTTGATGGGATTAGATCCTCCAGGGACAATCCAGGACGAGGGTGGCTGCCACAAGTGCCCTCTTTTGTGGATCAGTGTACATTTAtccctttgtttgtttgtttatatgtaCGCCTGCAACATTTCTGGAATGTCCTTTTTCTGTGTGAGCAGAGGTCACGGGCATCGAGTTGTTTTGGTGGAGTGCAAACTATTGGCTTTGCTCCCTACAGAGCCTGTTAGAGGTCAAAGACTGTTGGGAGAAAGAATTAAAGTTATGAATAGTAACCCTAGTTCTAAGAGTACAGCCAGAGCCCACTAACCTTGgcaccctgtttttttttagtttctgACTTTGTACATGTCTTTTAGGAAAGCATGGGCACTTGTATAACCTTTAACCTGTAGGGGTGGTGGGTCCGGCATGATTGCCAAACAAGAACACGCAAATTTCAGCATAGTGCTCCATAAGATGTGAAAGGGTGAACCTGTCAGCGGGCTGAGCTTACAGGTGTAGGATAATGTGTAACCTTCCATACATGTAATACAAACAAGTAATACAAACGTTCAACATAAATCATAAATAATTAAAGCATGAGAGTGaagaaaatacataaaaatgtcattaacaTATACCTAATATCACTAATATACTCTGAGTCCTCtgagaaataaaaaggaaatctgAACTGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38517 False 2220 lncRNA 0.39 1 21886589 21888808
TU38519 True 2868 lncRNA 0.40 1 21886682 21889549

Neighbor

gene id symbol gene type direction distance location
LOC120555410 LOC102205483,LOC101478550,LOC103365221,LOC100711032,LOC102299296,LOC102798867 coding upstream 177208 21699803 ~ 21709381 (+)
LOC120556067 NA coding upstream 204824 21674424 ~ 21681765 (+)
mrpl16 mrpl16,LOC102799737 coding upstream 212290 21668518 ~ 21674299 (+)
tgfbrap1 tgfbrap1 coding upstream 218872 21650745 ~ 21667717 (+)
grtp1a grtp1 coding upstream 260072 21614701 ~ 21626517 (+)
LOC120555860 NA coding downstream 21857 21911406 ~ 21921876 (+)
lmo7b NA coding downstream 300347 22189896 ~ 22227106 (+)
cdh16 cdh16 coding downstream 479802 22369351 ~ 22407710 (+)
rrad rrad coding downstream 484585 22374134 ~ 22377140 (+)
nae1 nae1 coding downstream 543962 22433511 ~ 22440373 (+)
G28976 NA non-coding upstream 167765 21718488 ~ 21718824 (+)
G28880 cul4a non-coding upstream 248508 21636531 ~ 21638081 (+)
G28875 NA non-coding upstream 270431 21615716 ~ 21616158 (+)
G28812 NA non-coding upstream 430049 21357332 ~ 21456540 (+)
LOC120556583 NA non-coding upstream 473380 21409652 ~ 21413209 (+)
G29004 NA non-coding downstream 194396 22083945 ~ 22084401 (+)
G29005 NA non-coding downstream 239415 22128964 ~ 22129578 (+)
LOC120556188 NA non-coding downstream 270021 22159570 ~ 22160895 (+)
G29085 NA non-coding downstream 478580 22368129 ~ 22368503 (+)
G29101 NA non-coding downstream 518417 22407966 ~ 22408239 (+)
gpc5a gpc5,LOC103365231 other upstream 14564 21720034 ~ 21872025 (+)
dcun1d2b dcun1d2,LOC102792160 other upstream 282683 21596331 ~ 21603906 (+)
tpp2 tpp2 other upstream 323775 21525592 ~ 21562814 (+)
grk1a grk1 other upstream 453442 21421110 ~ 21433147 (+)
G28826 NA other upstream 483139 21396213 ~ 21403450 (+)
ankrd11 ankrd11 other downstream 875170 22764719 ~ 22895007 (+)
LOC120555548 LOC103365626,LOC104942698 other downstream 1092234 22981783 ~ 22994164 (+)
G29292 NA other downstream 1247183 23136732 ~ 23137027 (+)
igdcc3 igdcc3 other downstream 1553600 23443149 ~ 23517263 (+)
G29433 NA other downstream 1837463 23727012 ~ 23732471 (+)

Expression


Co-expression Network