G29005



Basic Information


Item Value
gene id G29005
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 22128964 ~ 22129578 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>TU38534
GTATGTTTCCGTCGTCTCAACCATGCATAGAACATATTGTTGAATCgtacaaacaaatacaaaaacatttatttgaagaaaaaaaaatcaaaatcaaaagtgcAGCAAACTGTTCCATAAGTACTGTTTGTgtatatgggtgtgtgtgtcaagcAGCTGTGTGGGAGAGGAGACTCAAGGTGCAGATACTGTATTCAAATATTGGAGGAGGAGTATGTTGAGGTTATTCAAGAATCTGATTAAGGGTGTCACGATTTCGAAATCGACCgaaattaagtcacaatctCGAATTTcgaataaaaaaatggaatcgTCGATGCTGCCACGCCCCCACGTCACGTCAGGTCAGCTTgtgaagcagaaaaaaaacacacacgtgTTGAAGTGCTGCGAGCCAAACTCCTCTAACTTAGCTACAGCCAGTCAAAAGATAGcatggcaactgcagatgcaggagacccatcgacagaacttgaaccccctcctctttcactgaagtcgccggtgtggaagtattttggatttccagtgagtGTCAAAATTTGATAGCAGTGGCAGTGACAGAaccgtttggcttagttatcaatgccgttagcatcgtggctaacactttag

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU38534 True 615 lncRNA 0.42 1 22128964 22129578

Neighbor


gene id symbol gene type direction distance location
LOC120555860 NA coding upstream 207088 21911406 ~ 21921876 (+)
LOC120555410 LOC102205483,LOC101478550,LOC103365221,LOC100711032,LOC102299296,LOC102798867 coding upstream 419583 21699803 ~ 21709381 (+)
LOC120556067 NA coding upstream 447199 21674424 ~ 21681765 (+)
mrpl16 mrpl16,LOC102799737 coding upstream 454665 21668518 ~ 21674299 (+)
tgfbrap1 tgfbrap1 coding upstream 461247 21650745 ~ 21667717 (+)
lmo7b NA coding downstream 60318 22189896 ~ 22227106 (+)
cdh16 cdh16 coding downstream 239773 22369351 ~ 22407710 (+)
rrad rrad coding downstream 244556 22374134 ~ 22377140 (+)
nae1 nae1 coding downstream 303933 22433511 ~ 22440373 (+)
dync1li2 dync1li2 coding downstream 341931 22471509 ~ 22488379 (+)
G29004 NA non-coding upstream 44563 22083945 ~ 22084401 (+)
G28990 NA non-coding upstream 239415 21886589 ~ 21889549 (+)
G28976 NA non-coding upstream 410140 21718488 ~ 21718824 (+)
G28880 cul4a non-coding upstream 490883 21636531 ~ 21638081 (+)
G28875 NA non-coding upstream 512806 21615716 ~ 21616158 (+)
LOC120556188 NA non-coding downstream 29992 22159570 ~ 22160895 (+)
G29085 NA non-coding downstream 238551 22368129 ~ 22368503 (+)
G29101 NA non-coding downstream 278388 22407966 ~ 22408239 (+)
G29135 galns non-coding downstream 404364 22533942 ~ 22534868 (+)
G29139 NA non-coding downstream 419122 22548700 ~ 22601559 (+)
gpc5a gpc5,LOC103365231 other upstream 256939 21720034 ~ 21872025 (+)
dcun1d2b dcun1d2,LOC102792160 other upstream 525058 21596331 ~ 21603906 (+)
tpp2 tpp2 other upstream 566150 21525592 ~ 21562814 (+)
grk1a grk1 other upstream 695817 21421110 ~ 21433147 (+)
G28826 NA other upstream 725514 21396213 ~ 21403450 (+)
ankrd11 ankrd11 other downstream 635141 22764719 ~ 22895007 (+)
LOC120555548 LOC103365626,LOC104942698 other downstream 852205 22981783 ~ 22994164 (+)
G29292 NA other downstream 1007154 23136732 ~ 23137027 (+)
igdcc3 igdcc3 other downstream 1313571 23443149 ~ 23517263 (+)
G29433 NA other downstream 1597434 23727012 ~ 23732471 (+)

Expression



Co-expression Network