XLOC_005064 (sstr2a)


Basic Information

Item Value
gene id XLOC_005064
gene name sstr2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1556147 ~ 1557286 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009860
ATGGACACATGGACGTTTATGCCCAATTCCAACCTGTCCCTCCCTGACCGCCTGGTCAATGACAGTTTTTTCCCCGGGAACGAGTCTGACTTTGGTCTGGAGTTTTACCCTCCCAATGGCACTCACCCTGGCTTTGACCACACCAGTTCGGTGGTCATCACATTTGTGTACTTTGTAGTCTGCGCAGTGGGACTATGCGGGAACGCGCTGGTGATTTACGTCATCCTACGCTACGCCAAAATGAAGACGGTCACGAATATCTACATCTTAAACCTGGCCGTGGCGGATGTGCTGTGCATGCTGAGCTTGCCATTCATTGCCATACAGCTCTCGCTTCTCCATTGGCCGTTTGGATCTGCTATCTGCCGCGTCGTGCTAACCGTGGATTCAATGAACCAGTTCACCAGTATCTTCTTTCTGACGGTCATGAGCTTTGATCGATACCTTGCTGTAGTGCATCCGATCAAATCCACCAAATGGCGAAAGCCACGAATGGCCAAAACTATTAGTTTAGGCATGTGGAGTGTAGCTCTGCTGGTCAACCTACCGATTATGATCTACAGCGGGGTGAATGCCAAAAAAAATGAAGCCAGGACGTGCACCATGTTGTGGCCGGAGCCACAAAACACCTATTACACCGCTTTCATATTCTACACATTCTTCCTAGGGTTTTTCCTGCCGCTGATAGTCATTTCAATGTGCTACCTGCTTATTGTGATTAAAGTGAAGTCCTCCGGCATGCGAGTGGGATCCACTAAAAGAAAGCGATCCGAGCGGAAGGTCACCAGGATGGTGTCTATTGTCGTGGTggtgtttgtgctttgctggctACCTTTTTACGTCTTCAACGTGACGTCTGTGACTGGAACCGTTCCTACAACGCCTGTGCTCAAGAGCACATTTGACTTCGTGGTGGTTTTGGGTTACGCCAACAGTTGCGCCAATCCCATCCTCTACGCATTCCTGTCGGACAACTTTAAGAAGAGTTTCCAGAATGTGTTGTGCCTGAAAAGAGTCGGGGGATTGGATGAGATCGACCGAAGCGACAGCCGACAGGACAGGACACGAATGGTCAACGATATCATGACGGAAACGCATAACGCCGCGCTGCTCAATGGAGATCTGCAGACGACTATCTGA

Function

symbol description
sstr2a Predicted to enable somatostatin receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Orthologous to human SSTR2 (somatostatin receptor 2).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004994 somatostatin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140130-1 Predicted to enable somatostatin receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Orthologous to human SSTR2 (somatostatin receptor 2).

Ensembl:

ensembl_id ENSDARG00000059090

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009860 True 1140 mRNA 0.50 1 1556147 1557286

Neighbor

gene id symbol gene type direction distance location
XLOC_005063 CU694266.1 coding downstream 65559 1490472 ~ 1490588 (-)
XLOC_005062 NA coding downstream 102808 1452900 ~ 1453339 (-)
XLOC_005061 MED9 coding downstream 149667 1403806 ~ 1406480 (-)
XLOC_005060 LO018020.2 coding downstream 185775 1368645 ~ 1370372 (-)
XLOC_005059 RASSF4 coding downstream 194630 1349418 ~ 1361517 (-)
XLOC_005065 CABZ01081830.2 coding upstream 135728 1693014 ~ 1694053 (-)
XLOC_005066 sox9a coding upstream 390307 1947593 ~ 1951284 (-)
XLOC_005067 NA coding upstream 442733 2000019 ~ 2001490 (-)
XLOC_005068 NA coding upstream 443350 2000636 ~ 2001824 (-)
XLOC_005069 NA coding upstream 510677 2067963 ~ 2479931 (-)
XLOC_005057 NA non-coding downstream 470920 1072485 ~ 1085227 (-)
XLOC_005043 NA non-coding downstream 1147516 406187 ~ 408631 (-)
XLOC_005042 NA non-coding downstream 1200592 337808 ~ 355555 (-)
XLOC_005071 CU929359.1 non-coding upstream 1021951 2579237 ~ 2617510 (-)
XLOC_005072 NA non-coding upstream 1068383 2625669 ~ 2669500 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_05235089_05236228 SSTR2A coding CI01000047 null 5234144 ~ 5236273 (-)