LOC120555548 (LOC103365626,LOC104942698)


Basic Information

Item Value
gene id LOC120555548
gene name LOC103365626,LOC104942698
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 22981783 ~ 22994164 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU38851
ATGGTCTTCAGTAGCCACTTGGCCTACTGCCCGCCTCccttaaagaagaagaagaagaagaaggcgaGCTGCTGGCTGCCCTGGTGGTGTGTGTTCCTGGGCTGGTTCCTGTTGCTGTCCATCAGTGGATTATCCACTTACTTCACTCTGGTGTATGGCTTGTACTACGGCAAAGAAAAGTCAATCAAGTGGGTCATGTCTCTGGGCCTCTCCCTGTTCCAGAGCATCTTTGTACTGCAGCCTC
>XM_039794295.1
GCAACTGCAGCATTATGTGCTTTAGCTCTGTACATTATTATAACTATGGGCATGTTACTCCAAACCTCTGTCTTTTTGTGGATATCAGTTGGATTTCTATCTTTACCAAAGAAGTCTGATGCCTATACAGGCAATTACTCCCTTGTGCGGTGTGAATTTGTTTTCAGAAATGtctgttttgagttttttgggGGATCTAAAACCTGGTCCCAAGCCAGGAGCAGCTGTGAAAAGCGAGGAGGGGAGCTCCTGAAGGTGATGAACAGCCCGATCAAAATGTTCCTAAAGAACATCACCAGAGAGGGAAACACCGGCAACTTCACCTGGTGGCTAGGGAAGGGAGTCCAAGGGCAATACCAGGAACCCACCTTATTAAATGCTGACAACTGCACGTACATGAAGCTGAATCCTCTTAAGCTCATCAAAACATCGGACTGCAAGCAGAAACGAGGTTTCCTCTGCACCCACAATGCGTGGTCTTCTTCAAACACAAAGCAGAGCACAATCGTGTCTAGTCCTGCAACCAGATCTCGACCCAAAAGGGATGTAAATGCCATGGCTTTGTCTGTTtcaaacattcacacacttcTCCTGGAAGCAGATGCAGAACTACTGCGAATGGAAACGACAGTAGGGGAGCCGACAAACTACAACAGGGACAAATTCATTCAGTATTTGTTGAATGGCGTTAAAAACCTtactaaagatttttttttgcaaagcaACGACACTATCAGTCACATCATCAACTGTAGCAGTGGCATCCTCCTTCTCTCATTGACCAAATGTGACATCCAGACTTACCCGAACCCTACCtCTTTTTTTGAGGAGGTCTTTGAAATCTTTCGGACAGTCGCAATGCTGGTGGGTTTATTATCCAACCAGAGCATTGTCATCAGGTACCCAACAGGCACCATCTATCAGAGCACTTACACACCTGCTGACCTCGGCAATGCTGTGCTGGGTTCAAAGCAAGATGGTGTGTTCATCAAACTCCCCTCATTTGCAGCATTTCAGCCTCAGCTTGGAACACAAAGCACAATCATcgctcagATGGCTGCATTCTCACAGAATCCCCATCCATATAATAACAACATCTCAGGAACTGTTTGCAGCCTCATACTTAATAATGGAGTATCAGACATAAAGCTGGCCAACCTGCCAGAGATGATAGAGATCTTTTTGCCTCGTCCAAATGCTTCAATACTGATGAACAGTACCGTTGTGttggagaaaaacacaaaagcgCTGACCAATATCAACGTCTCAGACGCTAATATGACCATCTTCTTCAGCGTGGAGTCCAGTGCTAATGTGTCCTTGGTTCTTAGGTTGTCTCAAGGGTCACCTCCTAATGATACATATTTCAGCAACACAACCACCTTGAACCTAACAAGAGGCTATCGCTGGATGATAACCCCGAAGATGTTACAGCATACACCTGGAGTCTGGTATGTTGACACTGGACTCTTCGATTCCACTTGGAAGCCAGGTCTGACGCTGAGGATCACTTCTTTTATGAGCAAGTGCTTGTACTGGGACATAGTGAATGAGACATGGAGCACTGAGGGCTGCCGGGTGGGGGACAAAAGCACTCCAGAACAAACACAGTGTCTGTGTAACCACCTAACCCTCTTTGGGAGCTCCTTTTTTGTGATGCCAAACTACGTGGACCTTTCTCGCACAGCAGAGCTGTTTTCCACCGTGTCTCAAAATTATGTGGTGCTGGCACTGCTGTGCGCTTTCTTCGGGCTCTACCTGGTCACTCTGCTGTGGGCCTGCTATGCCGACCGCAGAGCACGCTCTAAGAGAAAGATGACTCTGCTGGAAGACAACCACCCAGGCGCTCAGTACAACTATCTGATCGGTGTCCAAACTGGCCATCGCAAGAATGCTGGGACCACCGCCAATGTGACAGTGAAGCTGATTGGCTCGGATGGCGAGAGTGACATACACATCCTCACAGATCCTGAGAAACCTGTGTTTGAAAGAGGAGCTGTGGATATGTTTCTGTTGGCCACCCCCTACCCACTGGGCGAAGTGCGAAACCTCAGGCTTCAGCACGACAACTCTGGAGGTCGCCCATCATGGTATATAAACAAGGTGACCGTACAAGACCTCCAAACACGACATGTGATTCACTTCTTTTGTGACTGCTGGTTGAGTGCTGACTGTGGAGACAACATGACAAAGAAAACCTTCAATGCTGCCAAGAACAACGAGATTGCCAGCTTCAGGAATATTTTCCATAGCAGAACATCGACTGGCTTCAGGGATGAACACATCTGGGTGTCCATAGTGGATCCTCCCTCACGTAGTCCGTTCACACGTGCCCAGAGGGTCTCTTGCTGCATGAGCCTGCTCCTCTGCACCATGGCCATCAATATCGCCTTCTGGAACATTCCCATGGATACAAACTCGCCAGTAGTCTTCAAGATTGGTTCATTGCAAATCACCTGGCAGGAGCTCATGGTGGGGATACAGAGTGGTCTTCTCATGTTTCCAAtcaacatcctcatcatcaCCATCTTCCGAAGCATCAGACCTCGCGTGATTTCAAATTCTCAAAAAGGCGACTCTGAGGAGAACTTAAGACCCCCTGCAGTTAATATACCAACTATTCTGAAGGACACAGAGAAGGTGATTTCTTTGGTGAGCAGTAGTCCGAGAAACAAGATGTCGGAGATGCCCAGGCTGGAGTCCACCGCTGACCTCTATCCTGCCTTGGACAGGGTGCATGAATTCATCCAGCTTATGcaagGGGAGAGTGAGAGTGACCCACACTGGGTGTACTGCAGCAAGTTCCTTCTGGCTGGTCTCTGTCACCTCCTGATGTGCCTGGAGAAACTGGATGAAAAGCACTTCCCGAGTCCACAGGAGTACCAGCAGACCCTCAACTTCACAAACCTGTTGGTTCGCAAGGCTGAGATGGTCTTCAGTAGCCACTTGGCCTACTGCCCGCCTCccttaaagaagaagaagaagaagaaggcgaGCTGCTGGCTGCCCTGGTGGTGTGTGTTCCTGGGCTGGTTCCTGTTGCTGTCCATCAGTGGATTATCCACTTACTTCACTCTGGTGTATGGCTTGTACTACGGCAAAGAAAAGTCAATCAAGTGGGTCATGTCTCTGGGCCTCTCCCTGTTCCAGAGCATCTTTGTACTGCAGCCTCTCAAGGTCCTAGGCGTTGCTGTGTTTTTTGCCCTGCTGCTGAAACCTGTAGCTGTTGAGGAGTCTGAAGAAATTGAGCAGGTGAAGTTAGAGCAACAAGACAAGTGTAGACGGTACTCTGGCAGGGACACACTGTGAGGAAGCTGTATTTAGCTGGATAAGCTGTCTTCTCCAACGGGCACAGCTGTGATCCACGGCACCCTCACTTCTTAAACACTCTTTTGCACTTATTAGTTCTAACTTTCTGGatatgtataaaatatatattcagtttttttgtatgtgtacaGAATTTCCAAAGCCTGAAAGGTGTAAATGGGTAATTAGTTGTTCTAGCATatcaaagtgttgttttttccaaGTAATTTACTATCTTTGATGATGTGTATGTAAAGAAAATCTCTGGTTGCTTTACTTCAATTCATGTCAACATACAAAATTAGTAGACTCCATTTAGAGCTTTAAGAGACATTGAAGCACCTATAGATATCGAAAACTGTAAGACGTATCATGAGCTCTTTGAGGTATTTTGATAGTAAACTgtcttcaatcaatcaataaagtaAACATAATTAACAAGTAATGGAATAGAAGCCCTGCTAGAATTTCCAGATATACTATATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38851 False 244 TUCP 0.52 2 22992137 22992502
XM_039794295.1 True 3796 mRNA 0.46 23 22981783 22994164

Neighbor

gene id symbol gene type direction distance location
LOC120555841 LOC102215785,LOC102786096,LOC101482767,LOC104919260 coding upstream 21380 22945044 ~ 22960403 (+)
sult5a1 NA coding upstream 52117 22923824 ~ 22929666 (+)
slc22a31 slc22a31 coding upstream 70505 22896342 ~ 22911278 (+)
cdh15 cdh15 coding upstream 229842 22713300 ~ 22751941 (+)
acsf3 acsf3 coding upstream 269849 22669904 ~ 22711934 (+)
mcee mcee coding downstream 18435 23012599 ~ 23014909 (+)
mettl15 mettl15 coding downstream 111057 23105221 ~ 23158790 (+)
lgr4 lgr4 coding downstream 225025 23219189 ~ 23254585 (+)
slc39a13 slc39a13 coding downstream 334446 23328610 ~ 23343208 (+)
tmem276b LOC104919254,LOC101064922,LOC103364365,LOC104940771,LOC103378694 coding downstream 351323 23345487 ~ 23354201 (+)
G29176 NA non-coding upstream 228138 22752468 ~ 22753645 (+)
G29139 NA non-coding upstream 380224 22548700 ~ 22601559 (+)
G29135 galns non-coding upstream 446915 22533942 ~ 22534868 (+)
G29101 NA non-coding upstream 573544 22407966 ~ 22408239 (+)
G29085 NA non-coding upstream 613280 22368129 ~ 22368503 (+)
G29241 ist1 non-coding downstream 3538 22997702 ~ 23001049 (+)
G29243 mphosph10 non-coding downstream 10714 23004878 ~ 23007982 (+)
G29228 LOC100136564,LOC104919244,LOC103365615 non-coding downstream 21868 23016032 ~ 23019378 (+)
G29262 NA non-coding downstream 27265 23021429 ~ 23024754 (+)
G29271 NA non-coding downstream 51129 23045293 ~ 23089580 (+)
ankrd11 ankrd11 other upstream 86776 22764719 ~ 22895007 (+)
gpc5a gpc5,LOC103365231 other upstream 1109758 21720034 ~ 21872025 (+)
dcun1d2b dcun1d2,LOC102792160 other upstream 1377877 21596331 ~ 21603906 (+)
tpp2 tpp2 other upstream 1418969 21525592 ~ 21562814 (+)
grk1a grk1 other upstream 1548636 21421110 ~ 21433147 (+)
G29292 NA other downstream 142568 23136732 ~ 23137027 (+)
igdcc3 igdcc3 other downstream 448985 23443149 ~ 23517263 (+)
G29433 NA other downstream 732848 23727012 ~ 23732471 (+)
plekha7b NA other downstream 1241559 24235723 ~ 24314645 (+)
sox6 sox6,LOC103363464 other downstream 1325900 24320064 ~ 24455688 (+)

Expression


Co-expression Network